mRNA_H-paniculata_contig15231.3077.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15231.3077.1
Unique NamemRNA_H-paniculata_contig15231.3077.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15231.3077.1 vs. uniprot
Match: A0A8F0FD85_9PHAE (ATP synthase subunit 9, mitochondrial n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0FD85_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.190e-38
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 1 
Query:    1 MLVQASKIIGAGLATIGLTGAGVGIGTVFGALVLGVSRNPTLKDELFKFAILGFALTEAIALFALMMAFLILFAI 225
            MLVQASKI+GAGLATIGLTGAGVGIGTVFGALVLGVSRNPTLKDELFKFAILGFALTEAIALFALMMAFLILFAI
Sbjct:    1 MLVQASKILGAGLATIGLTGAGVGIGTVFGALVLGVSRNPTLKDELFKFAILGFALTEAIALFALMMAFLILFAI 75
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BLAST of mRNA_H-paniculata_contig15231.3077.1 vs. uniprot
Match: Q3S284_THAPS (ATP synthase subunit 9, mitochondrial n=16 Tax=Bacillariophyta TaxID=2836 RepID=Q3S284_THAPS)

HSP 1 Score: 119 bits (299), Expect = 6.410e-34
Identity = 65/75 (86.67%), Postives = 72/75 (96.00%), Query Frame = 1 
Query:    1 MLVQASKIIGAGLATIGLTGAGVGIGTVFGALVLGVSRNPTLKDELFKFAILGFALTEAIALFALMMAFLILFAI 225
            ML+QA+K +GAGLATIGL GAGVGIGTVFGALV+GVSRNP+LKDELFK AILGFALTEAIALF+LMMAFLILFA+
Sbjct:    1 MLLQAAKFVGAGLATIGLAGAGVGIGTVFGALVIGVSRNPSLKDELFKLAILGFALTEAIALFSLMMAFLILFAL 75
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BLAST of mRNA_H-paniculata_contig15231.3077.1 vs. uniprot
Match: A0A0U2LTP8_9PHAE (ATP synthase subunit 9, mitochondrial n=153 Tax=Stramenopiles TaxID=33634 RepID=A0A0U2LTP8_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 7.490e-33
Identity = 64/75 (85.33%), Postives = 71/75 (94.67%), Query Frame = 1 
Query:    1 MLVQASKIIGAGLATIGLTGAGVGIGTVFGALVLGVSRNPTLKDELFKFAILGFALTEAIALFALMMAFLILFAI 225
            MLVQA+K++GAGLATIGL GAGVGIGTVF ALVLG +RNP+LKDELF+ AILGFALTEAIALFALMMAFLILFA+
Sbjct:    1 MLVQAAKLLGAGLATIGLAGAGVGIGTVFAALVLGTARNPSLKDELFRIAILGFALTEAIALFALMMAFLILFAL 75
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BLAST of mRNA_H-paniculata_contig15231.3077.1 vs. uniprot
Match: A0A2U9GIF0_9STRA (ATP synthase subunit 9, mitochondrial n=3 Tax=Eukaryota TaxID=2759 RepID=A0A2U9GIF0_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.060e-32
Identity = 61/75 (81.33%), Postives = 72/75 (96.00%), Query Frame = 1 
Query:    1 MLVQASKIIGAGLATIGLTGAGVGIGTVFGALVLGVSRNPTLKDELFKFAILGFALTEAIALFALMMAFLILFAI 225
            ML+QA+K +GAGLATIGL GAGVGIGTVFGALV+G+SRNP+LKDE+F+ AILGFALTEAIALFALM+AFL+LFA+
Sbjct:    1 MLLQAAKCVGAGLATIGLAGAGVGIGTVFGALVIGISRNPSLKDEMFRMAILGFALTEAIALFALMIAFLVLFAV 75
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BLAST of mRNA_H-paniculata_contig15231.3077.1 vs. uniprot
Match: A0A1J0RD98_9STRA (ATP synthase subunit 9, mitochondrial n=4 Tax=Bacillariophyta TaxID=2836 RepID=A0A1J0RD98_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.510e-32
Identity = 64/75 (85.33%), Postives = 70/75 (93.33%), Query Frame = 1 
Query:    1 MLVQASKIIGAGLATIGLTGAGVGIGTVFGALVLGVSRNPTLKDELFKFAILGFALTEAIALFALMMAFLILFAI 225
            ML+QA+K IGAGLATIGL GAG GIGTVFG+LVLG+SRNP LKDELFK AILGFALTEAIALFALM+AFLILFA+
Sbjct:    1 MLLQAAKCIGAGLATIGLAGAGAGIGTVFGSLVLGISRNPKLKDELFKMAILGFALTEAIALFALMIAFLILFAL 75
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BLAST of mRNA_H-paniculata_contig15231.3077.1 vs. uniprot
Match: A0A8E8U4W3_9PHAE (ATP synthase subunit 9, mitochondrial n=2 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8U4W3_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 1.510e-32
Identity = 61/75 (81.33%), Postives = 72/75 (96.00%), Query Frame = 1 
Query:    1 MLVQASKIIGAGLATIGLTGAGVGIGTVFGALVLGVSRNPTLKDELFKFAILGFALTEAIALFALMMAFLILFAI 225
            ML+QASK+IG GLATIGLTGAGVGIGTVFG+L++G SRNP++K+ELFK A+LGFALTEAIALFALM+AFLILFA+
Sbjct:    1 MLLQASKLIGGGLATIGLTGAGVGIGTVFGSLIIGTSRNPSMKEELFKLAVLGFALTEAIALFALMVAFLILFAL 75
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BLAST of mRNA_H-paniculata_contig15231.3077.1 vs. uniprot
Match: A0A649UBP4_AURAN (ATP synthase subunit 9, mitochondrial n=3 Tax=cellular organisms TaxID=131567 RepID=A0A649UBP4_AURAN)

HSP 1 Score: 113 bits (282), Expect = 2.510e-31
Identity = 60/75 (80.00%), Postives = 71/75 (94.67%), Query Frame = 1 
Query:    1 MLVQASKIIGAGLATIGLTGAGVGIGTVFGALVLGVSRNPTLKDELFKFAILGFALTEAIALFALMMAFLILFAI 225
            M++QA+K+IGAGL+TIGL GAGVGIG+VF AL+LG+SRNP+LKDELF+ AILGFALTEAIALFALMM FLILFA+
Sbjct:    1 MILQAAKLIGAGLSTIGLVGAGVGIGSVFAALILGISRNPSLKDELFRVAILGFALTEAIALFALMMGFLILFAL 75
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BLAST of mRNA_H-paniculata_contig15231.3077.1 vs. uniprot
Match: D2Z269_HETAK (ATP synthase subunit 9, mitochondrial n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=D2Z269_HETAK)

HSP 1 Score: 113 bits (282), Expect = 2.510e-31
Identity = 61/74 (82.43%), Postives = 69/74 (93.24%), Query Frame = 1 
Query:    1 MLVQASKIIGAGLATIGLTGAGVGIGTVFGALVLGVSRNPTLKDELFKFAILGFALTEAIALFALMMAFLILFA 222
            ML+QA+K +GAGLATIGL GAGVGIGTVF ALVLG SRNP++KD+LF+FAILGFALTEA ALFALM+AFLILFA
Sbjct:    1 MLLQAAKFVGAGLATIGLAGAGVGIGTVFSALVLGTSRNPSIKDDLFRFAILGFALTEATALFALMVAFLILFA 74
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BLAST of mRNA_H-paniculata_contig15231.3077.1 vs. uniprot
Match: A0A1L4BME2_9STRA (ATP synthase subunit 9, mitochondrial n=1 Tax=Didymosphenia geminata TaxID=1115533 RepID=A0A1L4BME2_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.510e-31
Identity = 61/75 (81.33%), Postives = 69/75 (92.00%), Query Frame = 1 
Query:    1 MLVQASKIIGAGLATIGLTGAGVGIGTVFGALVLGVSRNPTLKDELFKFAILGFALTEAIALFALMMAFLILFAI 225
            ML+QA+K IGAGL TIGL GAGVGIG +F ALVLG+SRNP+LKDELFK AILGFALTEAIALFALM+AFL+LFA+
Sbjct:    1 MLLQAAKCIGAGLTTIGLAGAGVGIGNIFSALVLGISRNPSLKDELFKMAILGFALTEAIALFALMLAFLLLFAL 75
[Close]
BLAST of mRNA_H-paniculata_contig15231.3077.1 vs. uniprot
Match: A0A343A6X7_9STRA (ATP synthase subunit 9, mitochondrial n=5 Tax=Naviculales TaxID=38748 RepID=A0A343A6X7_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.510e-31
Identity = 62/75 (82.67%), Postives = 69/75 (92.00%), Query Frame = 1 
Query:    1 MLVQASKIIGAGLATIGLTGAGVGIGTVFGALVLGVSRNPTLKDELFKFAILGFALTEAIALFALMMAFLILFAI 225
            M +QA+K IGAGLATIGL GAGVGIGTVFGALV+G+SRNP+LKDELFK AILGFALTEAIALFALM+ FL LFA+
Sbjct:    1 MELQAAKYIGAGLATIGLAGAGVGIGTVFGALVIGISRNPSLKDELFKMAILGFALTEAIALFALMIVFLFLFAL 75
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15231.3077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0FD85_9PHAE1.190e-3898.67ATP synthase subunit 9, mitochondrial n=1 Tax=Prot... [more]
Q3S284_THAPS6.410e-3486.67ATP synthase subunit 9, mitochondrial n=16 Tax=Bac... [more]
A0A0U2LTP8_9PHAE7.490e-3385.33ATP synthase subunit 9, mitochondrial n=153 Tax=St... [more]
A0A2U9GIF0_9STRA1.060e-3281.33ATP synthase subunit 9, mitochondrial n=3 Tax=Euka... [more]
A0A1J0RD98_9STRA1.510e-3285.33ATP synthase subunit 9, mitochondrial n=4 Tax=Baci... [more]
A0A8E8U4W3_9PHAE1.510e-3281.33ATP synthase subunit 9, mitochondrial n=2 Tax=Phae... [more]
A0A649UBP4_AURAN2.510e-3180.00ATP synthase subunit 9, mitochondrial n=3 Tax=cell... [more]
D2Z269_HETAK2.510e-3182.43ATP synthase subunit 9, mitochondrial n=1 Tax=Hete... [more]
A0A1L4BME2_9STRA2.510e-3181.33ATP synthase subunit 9, mitochondrial n=1 Tax=Didy... [more]
A0A343A6X7_9STRA2.510e-3182.67ATP synthase subunit 9, mitochondrial n=5 Tax=Navi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15231contigH-paniculata_contig15231:586..813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.8
Seed ortholog evalue2.3e-18
Seed eggNOG ortholog72658.Bostr.11903s0005.1.p
Preferred nameatp9
KEGG rclassRC00061
KEGG koko:K02128,ko:K03880
KEGG TC3.A.2.1,3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map05010,map05012,map05016
KEGG ModuleM00142,M00158
Hectar predicted targeting categorysignal anchor
GOsGO:0000276,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005753,GO:0006091,GO:0006119,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016310,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0019866,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0042776,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046907,GO:0046933,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600,GO:1990542
EggNOG free text desc.ATP hydrolysis coupled proton transport
EggNOG OGsCOG0636@1,KOG3025@2759
EC1.6.5.3
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029
Exons1
Model size228
Cds size228
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929220.165175-CDS-H-paniculata_contig15231:585..8131622929220.165175-CDS-H-paniculata_contig15231:585..813Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15231 586..813 -
1691480775.6487966-CDS-H-paniculata_contig15231:585..8131691480775.6487966-CDS-H-paniculata_contig15231:585..813Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15231 586..813 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15231.3077.1prot_H-paniculata_contig15231.3077.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15231 586..813 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15231.3077.1

>prot_H-paniculata_contig15231.3077.1 ID=prot_H-paniculata_contig15231.3077.1|Name=mRNA_H-paniculata_contig15231.3077.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
MLVQASKIIGAGLATIGLTGAGVGIGTVFGALVLGVSRNPTLKDELFKFA
ILGFALTEAIALFALMMAFLILFAI*
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mRNA from alignment at H-paniculata_contig15231:586..813-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15231.3077.1 ID=mRNA_H-paniculata_contig15231.3077.1|Name=mRNA_H-paniculata_contig15231.3077.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=228bp|location=Sequence derived from alignment at H-paniculata_contig15231:586..813- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTAGTTCAAGCTTCTAAAATTATAGGTGCTGGTTTGGCTACAATTGG
TCTTACTGGTGCTGGTGTTGGTATTGGTACTGTATTTGGAGCTTTAGTTT
TAGGGGTTTCAAGAAATCCTACATTGAAAGATGAGTTATTTAAATTTGCT
ATTTTAGGTTTTGCGTTAACAGAAGCTATTGCACTATTTGCATTAATGAT
GGCTTTTTTAATTCTATTTGCTATTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig15231:586..813-

>mRNA_H-paniculata_contig15231.3077.1 ID=mRNA_H-paniculata_contig15231.3077.1|Name=mRNA_H-paniculata_contig15231.3077.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig15231:586..813- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTAGTTCAAGCTTCTAAAATTATAGGTGCTGGTTTGGCTACAATTGG
TCTTACTGGTGCTGGTGTTGGTATTGGTACTGTATTTGGAGCTTTAGTTT
TAGGGGTTTCAAGAAATCCTACATTGAAAGATGAGTTATTTAAATTTGCT
ATTTTAGGTTTTGCGTTAACAGAAGCTATTGCACTATTTGCATTAATGAT
GGCTTTTTTAATTCTATTTGCTATTTAAATGTTAGTTCAAGCTTCTAAAA
TTATAGGTGCTGGTTTGGCTACAATTGGTCTTACTGGTGCTGGTGTTGGT
ATTGGTACTGTATTTGGAGCTTTAGTTTTAGGGGTTTCAAGAAATCCTAC
ATTGAAAGATGAGTTATTTAAATTTGCTATTTTAGGTTTTGCGTTAACAG
AAGCTATTGCACTATTTGCATTAATGATGGCTTTTTTAATTCTATTTGCT
ATTTAA
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