mRNA_H-paniculata_contig1523.3074.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1523.3074.1
Unique NamemRNA_H-paniculata_contig1523.3074.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1523.3074.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 1.460e-40
Identity = 92/247 (37.25%), Postives = 130/247 (52.63%), Query Frame = 1
Query:    1 AIYSLVQAGRYWNMKLTDDLKTLGFEQSHVDPCVFRTFLTGELVAIFVVHVDDLLALTTTKEIVKAIVGDLRSKCTIKDLGEVSYYTGCHITRNREKEELKFDQYFYAQTITNRFEINTTVMVPATGGVKSLSKEDGPQIPEEKEEMRGIPYREAVGVLTWASTMSWPDLSSAVGTEANFCEDPSMVHWKAVVMVLQYVRRSQGMGITYNGDRNGGTEVQASADSDHATCPDTRRSISGGKFFWAGG 741
            ++Y L QA R+W+  LT  L  LGF Q   D CVFR    G ++ I VVHVDD+ A+   KE       DL     +K+LGE+ +Y+ C   R+ E+  L+  Q  +A+ +   + I     VP    VK           +E E    +P+RE VG L W +T + PD+++AV   A +C  P MVHWKA + +L YVRR+  MGIT+      G  +Q   D+D+A+    RRS+SGG     GG
Sbjct:   12 SLYGLKQASRHWHAHLTRCLLLLGFLQCLADACVFRLMEEGRVIMIIVVHVDDIFAVGQ-KERCDKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWGRSVPLPVSVKLTDF-------DENEASADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGG 250          
BLAST of mRNA_H-paniculata_contig1523.3074.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 5.080e-40
Identity = 92/247 (37.25%), Postives = 130/247 (52.63%), Query Frame = 1
Query:    1 AIYSLVQAGRYWNMKLTDDLKTLGFEQSHVDPCVFRTFLTGELVAIFVVHVDDLLALTTTKEIVKAIVGDLRSKCTIKDLGEVSYYTGCHITRNREKEELKFDQYFYAQTITNRFEINTTVMVPATGGVKSLSKEDGPQIPEEKEEMRGIPYREAVGVLTWASTMSWPDLSSAVGTEANFCEDPSMVHWKAVVMVLQYVRRSQGMGITYNGDRNGGTEVQASADSDHATCPDTRRSISGGKFFWAGG 741
            ++Y L QA R+W+  LT  L  LGF Q   D CVFR    G ++ I VVHVDD+ A+   KE       DL     +K+LGE+ +Y+ C   R+ E+  L+  Q  +A+ +   + I     VP    VK           +E E    +P+RE VG L W +T + PD+++AV   A +C  P MVHWKA + +L YVRR+  MGIT+      G  +Q   D+D+A+    RRS+SGG     GG
Sbjct:   74 SLYGLKQASRHWHSHLTRCLLLLGFLQCLADACVFRLMEEGRVIMIIVVHVDDIFAVGQ-KERCDKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWGRSVPLPVSVKLTDF-------DENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGG 312          
BLAST of mRNA_H-paniculata_contig1523.3074.1 vs. uniprot
Match: A0A6H5KGB0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGB0_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 7.200e-39
Identity = 90/247 (36.44%), Postives = 130/247 (52.63%), Query Frame = 1
Query:    1 AIYSLVQAGRYWNMKLTDDLKTLGFEQSHVDPCVFRTFLTGELVAIFVVHVDDLLALTTTKEIVKAIVGDLRSKCTIKDLGEVSYYTGCHITRNREKEELKFDQYFYAQTITNRFEINTTVMVPATGGVKSLSKEDGPQIPEEKEEMRGIPYREAVGVLTWASTMSWPDLSSAVGTEANFCEDPSMVHWKAVVMVLQYVRRSQGMGITYNGDRNGGTEVQASADSDHATCPDTRRSISGGKFFWAGG 741
            ++Y L QA R W+  LT  L  LGF Q   D CVFR    G ++ I VVHVDD+ A+   KE       +L     +K+LGE+ +Y+ C   R+ E+  L+  Q  +A+ +   + +     VP    VK           +E E    +P+RE VG L W +T + PD+++AV   A +C  P+MVHWKA + +L YVRR+  MGIT+      G  +Q   D+D+A+    RRS+SGG     GG
Sbjct:  160 SLYGLKQASRQWHAHLTRCLLLLGFVQCLADACVFRLMEDGCVIMIIVVHVDDIFAVGQ-KERCDKFGSELNEMVPVKNLGELRWYSACFYQRDLERGLLRISQQRFAEELAAEYGVEWGKSVPLPVSVKLTDF-------DENEACADVPFRELVGSLMWLTTRTRPDIANAVRPVARYCASPTMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKAADRRSVSGGLVMCGGG 398          
BLAST of mRNA_H-paniculata_contig1523.3074.1 vs. uniprot
Match: A0A6H5JU31_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU31_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 9.630e-38
Identity = 92/247 (37.25%), Postives = 130/247 (52.63%), Query Frame = 1
Query:    1 AIYSLVQAGRYWNMKLTDDLKTLGFEQSHVDPCVFRTFLTGELVAIFVVHVDDLLALTTTKEIVKAIVGDLRSKCTIKDLGEVSYYTGCHITRNREKEELKFDQYFYAQTITNRFEINTTVMVPATGGVKSLSKEDGPQIPEEKEEMRGIPYREAVGVLTWASTMSWPDLSSAVGTEANFCEDPSMVHWKAVVMVLQYVRRSQGMGITYNGDRNGGTEVQASADSDHATCPDTRRSISGGKFFWAGG 741
            ++Y L QA R+W+  LT  L  LGF Q   D CVFR    G ++ I VVHVDD+ A+   KE       DL     +K+LGE+ +Y+ C   R+ E+  L+  Q  +A+ +   + I     VP    VK           +E E    +P+RE VG L W +T + PD+++AV   A +C  P MVHWKA + +L YVRR+  MGIT+      G  +Q   D+D+A+    RRS+SGG     GG
Sbjct:  984 SLYGLKQASRHWHSHLTRCLLLLGFLQCLADACVFRLMEEGRVIMIIVVHVDDIFAVGQ-KERCDKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWGRSVPLPVSVKLTDF-------DENEACADVPFRELVGSLMWLATQTRPDIANAVRAVAWYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGG 1222          
BLAST of mRNA_H-paniculata_contig1523.3074.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 3.370e-37
Identity = 90/247 (36.44%), Postives = 129/247 (52.23%), Query Frame = 1
Query:    1 AIYSLVQAGRYWNMKLTDDLKTLGFEQSHVDPCVFRTFLTGELVAIFVVHVDDLLALTTTKEIVKAIVGDLRSKCTIKDLGEVSYYTGCHITRNREKEELKFDQYFYAQTITNRFEINTTVMVPATGGVKSLSKEDGPQIPEEKEEMRGIPYREAVGVLTWASTMSWPDLSSAVGTEANFCEDPSMVHWKAVVMVLQYVRRSQGMGITYNGDRNGGTEVQASADSDHATCPDTRRSISGGKFFWAGG 741
            ++Y L QA R W+  LT  L  LGF +   D CVFR    G ++ I VVHVDD+ A+   KE       DL     +K+LGE+ +Y+ C   R+ E+  L+  Q  +A+ +   + +     VP    VK           +E E    +P+RE VG L W +T + PD+++AV   A +C  P MVHWKA + +L YVRR+  MGIT+      G  +Q   D+D+A+    RRS+SGG     GG
Sbjct: 1108 SLYGLKQASRQWHAHLTRCLLLLGFVRCLADACVFRLMEDGCVIMIIVVHVDDIFAVGQ-KERCDKFGSDLNEMVPVKNLGELRWYSACFYQRDLERGLLRISQQRFAEELAAEYGVEWGKSVPLPVSVKLTDF-------DENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKAADRRSVSGGLVMCGGG 1346          
BLAST of mRNA_H-paniculata_contig1523.3074.1 vs. uniprot
Match: A0A6H5JRE7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE7_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 8.060e-35
Identity = 84/239 (35.15%), Postives = 122/239 (51.05%), Query Frame = 1
Query:    1 AIYSLVQAGRYWNMKLTDDLKTLGFEQSHVDPCVFRTFLTGELVAIFVVHVDDLLALTTTKEIVKAIVGDLRSKCTIKDLGEVSYYTGCHITRNREKEELKFDQYFYAQTITNRFEINTTVMVPATGGVKSLSKEDGPQIPEEKEEMRGIPYREAVGVLTWASTMSWPDLSSAVGTEANFCEDPSMVHWKAVVMVLQYVRRSQGMGITYNGDRNGGTEVQASADSDHATCPDTRRSISG 717
            ++Y L QA R    +L  DL  +GFEQS  DPCV R  +  E++ IF +HVDD+L    TK + + IV  L      K+LGEV ++ GC I+R+RE   ++  Q  Y + +  RF I  T  +PA+    S S         E EE   +P+RE VG L W +  + P+ S+AV T A    +P    WKA   +L Y++ +  + + Y  D           D+D A+    RRS+SG
Sbjct:   20 SLYGLKQASRTSYKRLVSDLLWIGFEQSLSDPCVLRFMMGDEVMGIFAIHVDDILY-AGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCEISRDREAGTIEISQESYIRNVLERFNICRTSSIPASPANDSRSV-------MEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSG 250          
BLAST of mRNA_H-paniculata_contig1523.3074.1 vs. uniprot
Match: A0A6H5JKY9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKY9_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 1.460e-34
Identity = 87/247 (35.22%), Postives = 127/247 (51.42%), Query Frame = 1
Query:    1 AIYSLVQAGRYWNMKLTDDLKTLGFEQSHVDPCVFRTFLTGELVAIFVVHVDDLLALTTTKEIVKAIVGDLRSKCTIKDLGEVSYYTGCHITRNREKEELKFDQYFYAQTITNRFEINTTVMVPATGGVKSLSKEDGPQIPEEKEEMRGIPYREAVGVLTWASTMSWPDLSSAVGTEANFCEDPSMVHWKAVVMVLQYVRRSQGMGITYNGDRNGGTEVQASADSDHATCPDTRRSISGGKFFWAGG 741
            ++Y L QA R+W+  LT  L  LGF Q   D CVFR      ++ I VV VDD+ A+   +        DL     +K+LGE+ +Y+ C   R+ E+  L+  Q  +A+ +   + +     VP    VK           +E E    +P+RE VG L W +T + PD+++AV   A +C  P MVHWKA + +L YVRR+  MGIT+      G  +Q   D+D+A+    RRS+SGG     GG
Sbjct: 1055 SLYGLKQASRHWHAHLTRCLLLLGFVQCLADACVFRLMEDICVIMIIVVPVDDIFAVGQKR--CDKFGSDLNDMVPVKNLGELRWYSACFYQRDLERGLLRISQQRFAEELAAEYGVEWGKSVPLPVSVKLTDF-------DENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGISMQVFLDADYASKAADRRSVSGGLVMCGGG 1292          
BLAST of mRNA_H-paniculata_contig1523.3074.1 vs. uniprot
Match: A0A182GPU0_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GPU0_AEDAL)

HSP 1 Score: 143 bits (361), Expect = 3.410e-34
Identity = 86/248 (34.68%), Postives = 131/248 (52.82%), Query Frame = 1
Query:    1 AIYSLVQAGRYWNMKLTDDLKTLGFEQSHVDPCVFRTFLTGELVAIFVVHVDDLLALTTTKEIVKAIVGDLRSKCTIKDLGEVSYYTGCHITRNREKEELKFDQYFYAQTITNRFEINTT--VMVPATGGVKSLSKEDGPQIPEEKEEMRGIPYREAVGVLTWASTMSWPDLSSAVGTEANFCEDPSMVHWKAVVMVLQYVRRSQGMGITYNGDRNGGTEVQASADSDHATCPDTRRSISGGKFFWAG 738
            A+Y L Q+ R WN KL   L+  G ++S VD C++   + G+ +    ++VDDLL  T  + +   +   L  K  +KDLGE ++  G  I R+R +  L  DQ  Y + +  RF +     V  PA   +K L K   P+  EE  EMR +P++EAVG L++ +  + PD++ AV   + F  +P   HW AV  +++YV+ +    + Y  D NGG  +Q  +D+D    PD RRS SG  F   G
Sbjct:  397 ALYGLKQSSRVWNEKLDAVLRGFGLQRSLVDTCLYW-IIDGDKILFVTIYVDDLLIFTNNRALKMKLKQYLMEKFDMKDLGEATHCLGIRIARDRTEGRLSLDQEAYIEKVIQRFGMTDARPVATPADSSIK-LEKSMAPKTAEEAMEMRKVPFKEAVGCLSFVAQTTRPDIAYAVNAVSQFSANPGRQHWDAVKRIIRYVKGTSKKKLVYTKDENGG--LQGYSDADWGGDPDDRRSTSGYLFTMQG 640          
BLAST of mRNA_H-paniculata_contig1523.3074.1 vs. uniprot
Match: W4VRQ4_9DIPT (Putative retrovirus-related pol polyprotein from transposon tnt n=1 Tax=Corethrella appendiculata TaxID=1370023 RepID=W4VRQ4_9DIPT)

HSP 1 Score: 143 bits (360), Expect = 6.620e-34
Identity = 88/249 (35.34%), Postives = 131/249 (52.61%), Query Frame = 1
Query:    1 AIYSLVQAGRYWNMKLTDDLKTLGFEQSHVDPCVFRTFLTGELVAIFVVHVDDLLALTTTKEIVKAIVGDLRSKCTIKDLGEVSYYTGCHITRNREKEELKFDQYFYAQTITNRFEINTTV--MVPATGGVKSLSKEDGPQIPEEKEEMRGIPYREAVGVLTWASTMSWPDLSSAVGTEANFCEDPSMVHWKAVVMVLQYVRRSQGMGITYNGDRNGGTEVQASADSDHATCPDTRRSISGGKFFWAGG 741
            A+Y L QA R WN KL + LK+LGF+QS  D CV+   + G  + I  ++VDD++  +     +K I   L  +  +KD+G+  +  G  IT    K  +  DQ  Y + I N+F ++       P     K LSK D P +P E E+M+ +PY+EA+G L + S  + PD+S  V   + F  +P   HW AV  + +Y+R +    +TYN   N  +EV A  D+D A+  D R+S SG      GG
Sbjct: 1027 ALYGLKQASRVWNRKLDEKLKSLGFQQSTYDTCVYFK-IEGNRILIIAIYVDDMMLFSNCLNWLKEIKEKLGREFRMKDMGKAKFCLGIKITET--KSCITLDQQHYIEEILNKFGMSECKPSYTPMQHNQK-LSKADSPNLPAEIEDMKQVPYQEAIGCLMYLSNCTRPDISFVVNKLSRFNNNPGTEHWAAVKHLFRYLRGTSSYNLTYNRGSNSASEVVAYCDADWASDLDDRKSTSGFVLLAQGG 1271          
BLAST of mRNA_H-paniculata_contig1523.3074.1 vs. uniprot
Match: UPI001E1BA9BB (uncharacterized protein LOC116922675 n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BA9BB)

HSP 1 Score: 137 bits (346), Expect = 1.830e-33
Identity = 93/251 (37.05%), Postives = 136/251 (54.18%), Query Frame = 1
Query:    1 AIYSLVQAGRYWNMKLTDDLKTLGFEQSHVDPCVFRTFLTGE-LVAIFVVHVDDLLALTTTKEIVKAIVGDLRSKCTIKDLGEVSYYTGCHITRNREKEELKFDQYFYAQTITNRFEIN--TTVMVPATGGVKSLSKEDGPQIPEEKEEMRGIPYREAVGVLTWASTMSWPDLSSAVGTEANFCEDPSMVHWKAVVMVLQYVRRSQGMGITYNGDRNGGTE-VQASADSDHATCPDTRRSISGGKFFWAGG 741
            ++Y L QA R WN++L D +   G  +S  D CV+     G  ++AIF   VDD L   T ++ ++  V  L++K  ++ L     + G  I RNRE+  L   Q     TI  +F++    +V  PA  G+K LS    PQ  +E EEM+ IPY+EAVG L + ST + PD+S AVG  A F  +P + HWKAV  + +Y+  ++  GI ++ + +G  E +    D+DHA  PD R S SG  F   GG
Sbjct:  130 SLYGLKQAPRAWNIELNDAIVRYGLIRSDEDQCVYHLVEEGSWILAIF--FVDDGLICGTNEKTLEKFVDHLKTKFELRTL-PAGRFLGITIDRNRERRHLSISQPDAVDTILKKFKMGDCNSVSTPAEPGLK-LSLNMSPQTDKEVEEMKQIPYKEAVGALLYLSTTTRPDISYAVGQVAKFNHNPGVQHWKAVKRIFRYLAGTREYGILFSPNPSGKEEEIVGFTDADHAGDPDDRSSTSGCVFICHGG 376          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1523.3074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4G9_9PHAE1.460e-4037.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JEF2_9PHAE5.080e-4037.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGB0_9PHAE7.200e-3936.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JU31_9PHAE9.630e-3837.25Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JHY5_9PHAE3.370e-3736.44Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JRE7_9PHAE8.060e-3535.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JKY9_9PHAE1.460e-3435.22Integrase catalytic domain-containing protein n=1 ... [more]
A0A182GPU0_AEDAL3.410e-3434.68Reverse transcriptase Ty1/copia-type domain-contai... [more]
W4VRQ4_9DIPT6.620e-3435.34Putative retrovirus-related pol polyprotein from t... [more]
UPI001E1BA9BB1.830e-3337.05uncharacterized protein LOC116922675 n=1 Tax=Daphn... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1523contigH-paniculata_contig1523:18286..19345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.1
Seed ortholog evalue1.5e-29
Seed eggNOG ortholog164328.Phyra71619
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3QHW0@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size1060
Cds size993
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1523.3074.1prot_H-paniculata_contig1523.3074.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1523 18314..19306 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929219.995319-UTR-H-paniculata_contig1523:18285..183131622929219.995319-UTR-H-paniculata_contig1523:18285..18313Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1523 18286..18313 -
1691480775.5853152-UTR-H-paniculata_contig1523:18285..183131691480775.5853152-UTR-H-paniculata_contig1523:18285..18313Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1523 18286..18313 -
1622929220.0179658-UTR-H-paniculata_contig1523:19306..193451622929220.0179658-UTR-H-paniculata_contig1523:19306..19345Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1523 19307..19345 -
1691480775.6055408-UTR-H-paniculata_contig1523:19306..193451691480775.6055408-UTR-H-paniculata_contig1523:19306..19345Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1523 19307..19345 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929220.007775-CDS-H-paniculata_contig1523:18313..193061622929220.007775-CDS-H-paniculata_contig1523:18313..19306Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1523 18314..19306 -
1691480775.5971434-CDS-H-paniculata_contig1523:18313..193061691480775.5971434-CDS-H-paniculata_contig1523:18313..19306Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1523 18314..19306 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1523.3074.1

>prot_H-paniculata_contig1523.3074.1 ID=prot_H-paniculata_contig1523.3074.1|Name=mRNA_H-paniculata_contig1523.3074.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=331bp
MKLTDDLKTLGFEQSHVDPCVFRTFLTGELVAIFVVHVDDLLALTTTKEI
VKAIVGDLRSKCTIKDLGEVSYYTGCHITRNREKEELKFDQYFYAQTITN
RFEINTTVMVPATGGVKSLSKEDGPQIPEEKEEMRGIPYREAVGVLTWAS
TMSWPDLSSAVGTEANFCEDPSMVHWKAVVMVLQYVRRSQGMGITYNGDR
NGGTEVQASADSDHATCPDTRRSISGGKFFWAGGDQLILAGPRGYGGRHF
GDGVRGTFGDCYRVTFSPGAGVHHAHSGELTHRHHGGQTGGHHDGQKQAP
QRENEVHRRKAPRCTQCRGRRKGKYNLRED*
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mRNA from alignment at H-paniculata_contig1523:18286..19345-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1523.3074.1 ID=mRNA_H-paniculata_contig1523.3074.1|Name=mRNA_H-paniculata_contig1523.3074.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1060bp|location=Sequence derived from alignment at H-paniculata_contig1523:18286..19345- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAATCTATAGCCTGGTGCAAGCCGGAAGGTACTGGAACATGAAGCTCAC CGACGACCTGAAGACGTTAGGGTTCGAGCAGTCGCATGTCGATCCCTGCG TGTTCCGCACGTTTCTTACCGGGGAGCTGGTGGCGATCTTCGTGGTGCAT GTGGACGACCTTCTGGCCCTGACCACCACGAAGGAGATAGTGAAGGCAAT CGTGGGGGACCTGCGCTCGAAGTGCACGATCAAGGATCTAGGGGAGGTGT CGTACTACACGGGCTGCCACATCACCCGTAACCGTGAGAAAGAGGAGCTG AAGTTCGACCAGTACTTCTACGCACAGACGATCACGAACCGCTTCGAGAT CAACACGACCGTCATGGTCCCGGCGACAGGAGGCGTGAAATCGCTGTCGA AGGAAGACGGGCCGCAGATCCCGGAGGAGAAGGAGGAAATGCGCGGAATT CCGTACCGCGAGGCTGTGGGAGTGCTCACGTGGGCATCGACCATGTCCTG GCCCGACCTCTCGAGTGCTGTTGGCACCGAGGCCAATTTCTGCGAAGACC CCAGCATGGTGCACTGGAAGGCTGTGGTGATGGTCCTACAGTACGTGCGG AGGAGCCAGGGCATGGGGATCACCTACAACGGAGACAGGAACGGCGGGAC CGAGGTGCAGGCATCCGCAGACTCGGACCACGCTACATGCCCGGACACTA GGCGTTCGATTTCAGGGGGGAAGTTCTTCTGGGCGGGGGGCGATCAGCTG ATTCTCGCGGGCCCAAGAGGCTACGGCGGCAGACACTTTGGAGATGGAGT ACGCGGCACTTTCGGAGATTGTTACAGAGTTACTTTTTCGCCAGGTGCAG GCGTTCATCATGCTCACTCTGGAGAGCTAACCCATCGACATCATGGAGGA CAAACAGGGGGTCATCATGATGGCCAAAAACAAGCACCCCAGCGAGAGAA CGAGGTGCATCGACGTAAAGCACCGCGTTGTACGCAATGCCGTGGACGCA GGAAGGGTAAGTATAACCTCCGTGAAGACTGAAGACCATCATGCTGATAT GCTCACCAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig1523:18286..19345-

>mRNA_H-paniculata_contig1523.3074.1 ID=mRNA_H-paniculata_contig1523.3074.1|Name=mRNA_H-paniculata_contig1523.3074.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1986bp|location=Sequence derived from alignment at H-paniculata_contig1523:18286..19345- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGCTCACCGACGACCTGAAGACGTTAGGGTTCGAGCAGTCGCATGT
CGATCCCTGCGTGTTCCGCACGTTTCTTACCGGGGAGCTGGTGGCGATCT
TCGTGGTGCATGTGGACGACCTTCTGGCCCTGACCACCACGAAGGAGATA
GTGAAGGCAATCGTGGGGGACCTGCGCTCGAAGTGCACGATCAAGGATCT
AGGGGAGGTGTCGTACTACACGGGCTGCCACATCACCCGTAACCGTGAGA
AAGAGGAGCTGAAGTTCGACCAGTACTTCTACGCACAGACGATCACGAAC
CGCTTCGAGATCAACACGACCGTCATGGTCCCGGCGACAGGAGGCGTGAA
ATCGCTGTCGAAGGAAGACGGGCCGCAGATCCCGGAGGAGAAGGAGGAAA
TGCGCGGAATTCCGTACCGCGAGGCTGTGGGAGTGCTCACGTGGGCATCG
ACCATGTCCTGGCCCGACCTCTCGAGTGCTGTTGGCACCGAGGCCAATTT
CTGCGAAGACCCCAGCATGGTGCACTGGAAGGCTGTGGTGATGGTCCTAC
AGTACGTGCGGAGGAGCCAGGGCATGGGGATCACCTACAACGGAGACAGG
AACGGCGGGACCGAGGTGCAGGCATCCGCAGACTCGGACCACGCTACATG
CCCGGACACTAGGCGTTCGATTTCAGGGGGGAAGTTCTTCTGGGCGGGGG
GCGATCAGCTGATTCTCGCGGGCCCAAGAGGCTACGGCGGCAGACACTTT
GGAGATGGAGTACGCGGCACTTTCGGAGATTGTTACAGAGTTACTTTTTC
GCCAGGTGCAGGCGTTCATCATGCTCACTCTGGAGAGCTAACCCATCGAC
ATCATGGAGGACAAACAGGGGGTCATCATGATGGCCAAAAACAAGCACCC
CAGCGAGAGAACGAGGTGCATCGACGTAAAGCACCGCGTTGTACGCAATG
CCGTGGACGCAGGAAGGGTAAGTATAACCTCCGTGAAGACTGAATGAAGC
TCACCGACGACCTGAAGACGTTAGGGTTCGAGCAGTCGCATGTCGATCCC
TGCGTGTTCCGCACGTTTCTTACCGGGGAGCTGGTGGCGATCTTCGTGGT
GCATGTGGACGACCTTCTGGCCCTGACCACCACGAAGGAGATAGTGAAGG
CAATCGTGGGGGACCTGCGCTCGAAGTGCACGATCAAGGATCTAGGGGAG
GTGTCGTACTACACGGGCTGCCACATCACCCGTAACCGTGAGAAAGAGGA
GCTGAAGTTCGACCAGTACTTCTACGCACAGACGATCACGAACCGCTTCG
AGATCAACACGACCGTCATGGTCCCGGCGACAGGAGGCGTGAAATCGCTG
TCGAAGGAAGACGGGCCGCAGATCCCGGAGGAGAAGGAGGAAATGCGCGG
AATTCCGTACCGCGAGGCTGTGGGAGTGCTCACGTGGGCATCGACCATGT
CCTGGCCCGACCTCTCGAGTGCTGTTGGCACCGAGGCCAATTTCTGCGAA
GACCCCAGCATGGTGCACTGGAAGGCTGTGGTGATGGTCCTACAGTACGT
GCGGAGGAGCCAGGGCATGGGGATCACCTACAACGGAGACAGGAACGGCG
GGACCGAGGTGCAGGCATCCGCAGACTCGGACCACGCTACATGCCCGGAC
ACTAGGCGTTCGATTTCAGGGGGGAAGTTCTTCTGGGCGGGGGGCGATCA
GCTGATTCTCGCGGGCCCAAGAGGCTACGGCGGCAGACACTTTGGAGATG
GAGTACGCGGCACTTTCGGAGATTGTTACAGAGTTACTTTTTCGCCAGGT
GCAGGCGTTCATCATGCTCACTCTGGAGAGCTAACCCATCGACATCATGG
AGGACAAACAGGGGGTCATCATGATGGCCAAAAACAAGCACCCCAGCGAG
AGAACGAGGTGCATCGACGTAAAGCACCGCGTTGTACGCAATGCCGTGGA
CGCAGGAAGGGTAAGTATAACCTCCGTGAAGACTGA
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