mRNA_H-paniculata_contig15213.3070.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15213.3070.1
Unique NamemRNA_H-paniculata_contig15213.3070.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15213.3070.1 vs. uniprot
Match: A0A6H5KTB8_9PHAE (DUF547 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTB8_9PHAE)

HSP 1 Score: 330 bits (845), Expect = 5.770e-101
Identity = 168/227 (74.01%), Postives = 187/227 (82.38%), Query Frame = 1 
Query:    1 VPFLDQASTFRKVDLSKLDLESDEAICFFANLYHVMVRHMLLVLGPPSSAKDWPSTFVQVSYEVGGDVFSLQELEHCVLRGRLPRPNLKDLPKRFAPLPPENDHHYMYKLGKADARMSLFLNNASQSNPPMVYLLTPRALDEQLNRACQTFVDYTVKTDPKKRQLRVHKAFQLYARDLQPRATSKDMIRYSLRF----VMLDLSTLDVDFSQVSVRYH----PYLLK 657
            VPFLD AS FRKVDLS+LDL+SDEA+CFF NLYH++VRHMLLVLG PSSAK+WPS F +VSYEVGGDVFSLQELEHCVLRG+LPRP+LKDLPKRFAPLPPE D HY YKLGKADAR+SLFLNNASQSNP  V LL+P  +DEQLN ACQ FVD+T KTD K+RQ+ VHK FQLYARDLQPRATS DM+RY LRF    V   LS L+V+ SQ  +R      P LLK
Sbjct: 1163 VPFLDLASAFRKVDLSRLDLDSDEALCFFGNLYHLLVRHMLLVLGAPSSAKEWPSRFAEVSYEVGGDVFSLQELEHCVLRGKLPRPSLKDLPKRFAPLPPELDDHYAYKLGKADARISLFLNNASQSNPTSVVLLSPEKIDEQLNHACQAFVDHTFKTDLKRRQILVHKVFQLYARDLQPRATSTDMVRYGLRFAGKAVFHGLSALEVNISQAHIRTDRSRTPVLLK 1389
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BLAST of mRNA_H-paniculata_contig15213.3070.1 vs. uniprot
Match: K8YWH0_NANGC (DUF547 domain-containing protein (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YWH0_NANGC)

HSP 1 Score: 186 bits (471), Expect = 3.760e-53
Identity = 105/232 (45.26%), Postives = 140/232 (60.34%), Query Frame = 1 
Query:    1 VPFLDQASTFRKVDLSKLDLESDEAICFFANLYHVMVRHMLLVLGPPSSAKDWPSTFVQVSYEVGGDVFSLQELEHCVLRGRLPRPNLKDLPKRFAPLPPENDHHYMYKLGKADARMSLFLNNASQSNPPMVYLLTPRALDEQLNRACQTFVDYTVKTDPKKRQLRVHKAFQLYARDLQPRATSKDMIRYSLRFVMLD----LSTLDVDFSQVSVRYHPYLLKCHETMNLLD 684
            V FLD  S+FR + L  LDL S EA+ FF N+YH +++H LL+LGPPSS KDW + F  VSYE+G DVFSL ELEHCVLRG L RP  + +P+     PP +D HY+Y L K + R++  L N S S PP V +     L+EQLNRA   F+D+TV+ D KKR L + K   +Y  D     T ++ ++  LRF+       +S L       SV+Y     KCHET+ L++
Sbjct:   51 VSFLDLCSSFRVLPLHLLDLASPEALVFFLNIYHTLLQHALLLLGPPSS-KDWSAFFTNVSYEMGNDVFSLTELEHCVLRGHLARP--RSVPRHMPSPPPLDDDHYLYALSKTNFRINFALVNGSLSAPPFVTVFQAGHLNEQLNRASVRFIDHTVRMDGKKRLLVLPKVCDIYRADFSAAKTGRETMKVCLRFLERAKWERISWLMAGAKAPSVKYSSMRAKCHETLCLIE 279
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BLAST of mRNA_H-paniculata_contig15213.3070.1 vs. uniprot
Match: W7U430_9STRA (DUF547 domain-containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7U430_9STRA)

HSP 1 Score: 186 bits (472), Expect = 3.520e-50
Identity = 105/232 (45.26%), Postives = 140/232 (60.34%), Query Frame = 1 
Query:    1 VPFLDQASTFRKVDLSKLDLESDEAICFFANLYHVMVRHMLLVLGPPSSAKDWPSTFVQVSYEVGGDVFSLQELEHCVLRGRLPRPNLKDLPKRFAPLPPENDHHYMYKLGKADARMSLFLNNASQSNPPMVYLLTPRALDEQLNRACQTFVDYTVKTDPKKRQLRVHKAFQLYARDLQPRATSKDMIRYSLRFVMLD----LSTLDVDFSQVSVRYHPYLLKCHETMNLLD 684
            V FLD  S+FR + L  LDL S EA+ FF N+YH +++H LL+LGPPSS KDW + F  VSYE+G DVFSL ELEHCVLRG L RP  + +P+     PP +D HY+Y L K + R++  L N S S PP V +     L+EQLNRA   F+D+TV+ D KKR L + K   +Y  D     T ++ ++  LRF+       +S L       SV+Y     KCHET+ L++
Sbjct: 1286 VSFLDLCSSFRVLPLHLLDLASPEALVFFLNIYHTLLQHALLLLGPPSS-KDWSAFFTNVSYEMGNDVFSLTELEHCVLRGHLARP--RSVPRHMPSPPPLDDDHYLYALSKTNFRINFALVNGSLSAPPFVTVFQAGHLNEQLNRASVRFIDHTVRMDAKKRLLVLPKVCDIYRADFSAAKTGRETMKVCLRFLERAKWERISWLMAGAKAPSVKYSSMRAKCHETLCLIE 1514
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BLAST of mRNA_H-paniculata_contig15213.3070.1 vs. uniprot
Match: A0A7S3Y6P5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6P5_HETAK)

HSP 1 Score: 132 bits (332), Expect = 1.510e-34
Identity = 72/171 (42.11%), Postives = 101/171 (59.06%), Query Frame = 1 
Query:   19 ASTFRKVDLSKLDLESDEAICFFANLYHVMVRHMLLVLGPPSSAKDWPSTFVQVSYEVGGDVFSLQELEHCVLRGRLPRPNLKDLPKRFAPLPPENDHHYMYKLGKADARMSLFLNNASQSNPPMVYLLTPRALDEQLNRACQTFVDYTVKTDPKKRQLRVHKAFQLYARD 531
            A+  + +DL +LD  +  A+CF+ANLYH ++RH  LVLGPP+S   W + F   SYEVG DVFSL E+E+C LRGR  RP  + +PK +   P   D HY Y L K D R++  LNN S S+PP V  + P  L+ QL  A    +   V  DP++R + + +   ++  D
Sbjct:    1 AAALKLLDLGRLDPATPGALCFWANLYHALLRHAHLVLGPPASKYRWAAWFATASYEVGRDVFSLAEIEYCALRGRS-RP--RAVPKYWPTPPNAKDEHYQYALEKVDNRINFLLNNGSVSDPPGVRPVGPATLEAQLGAAAADALGAGVAVDPRRRAIYLPQVCSVFGAD 168
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BLAST of mRNA_H-paniculata_contig15213.3070.1 vs. uniprot
Match: A0A7S2SG73_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SG73_9STRA)

HSP 1 Score: 128 bits (321), Expect = 1.140e-32
Identity = 78/223 (34.98%), Postives = 126/223 (56.50%), Query Frame = 1 
Query:   25 TFRKVDLSKLDLESDEAICFFANLYHVMVRHMLLVLGPPSSAKDWPSTFVQVSYEVGGDVFSLQELEHCVLRGRLPRPNLKDLPKRFAPLPPENDHHYMYKLGKADARMSLFLNNASQSNPPMVYLLTPRALDEQLNRACQTFVDYTVKTDPKKRQLRVHKAFQLYARDL---QPRAT-SKDMIRYSLRFVMLDL---STLDVDFSQVSVRYHPYLLKCHETM 672
            + R +  S LD E+ E +CF+ N+YH +V+H LLV+GP  SAK+W +    VSYE+ G+VFSL E+E C+LRGRL  P  + +PK +  +    D    + +   D R++  LN    ++ P V +L P  L+  LN     F+D TV  D +  Q+ +H+   +Y  D+    P+A  + + IR+ +R V  DL    TL ++ ++ ++++HPY     ET+
Sbjct:    1 SLRGLSASLLDPEASETLCFWVNVYHTLVQHTLLVMGP-QSAKEWATAHATVSYELLGNVFSLAEMEQCILRGRLSPP--RTVPKHYPRVASRQDERIAFAV-YPDPRVNFVLNPGCVAHGPEVSVLRPAVLNLTLNEITSNFLDRTVTVDLQAAQITLHRVLDMYLFDVCDSSPKANVTVECIRFCVRHVSRDLWTKLTLLLNEAKPTLKFHPYKFNSVETL 219
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BLAST of mRNA_H-paniculata_contig15213.3070.1 vs. uniprot
Match: A0A7S0BZX4_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BZX4_9STRA)

HSP 1 Score: 124 bits (311), Expect = 7.090e-29
Identity = 77/201 (38.31%), Postives = 111/201 (55.22%), Query Frame = 1 
Query:    7 FLDQASTFRKVDLSKLDLESDEAICFFANLYHVMVRHMLLVL--GPPSSAKDWPSTFVQVS-YEVGGDVFSLQELEHCVLRGRLPRPNLKDLPKRFAPLPPENDHHYMYKLGK--ADARMSLFLNNASQSNPPMVYLLTPRALDEQLNRACQTFVDYTVKTDPKKRQLRVHKAFQLYARDLQPRATSKDMIRYSLRFVMLD 594
            FLD  S  R + LS LD  S E +C F N+YH + +H LL+   GPP+  K   + F+  + YE+G DVFSL E+EHCV+R R+ RP    +   F  +P  + +HY Y L     DAR++ FLN  + SN   V +L+P  ++EQ+N AC  F+D  +  D KKR + + K   +Y  D      S   + + L+FV  D
Sbjct:  384 FLDDTSRLRTIPLSCLDFSSVETMCIFVNIYHCLFQHALLLSANGPPT--KRSIARFMNCTCYEIGDDVFSLAEIEHCVIRARMSRPANNRV--SFVSVPKVSHNHYYYALSTFACDARINFFLNTGATSNLGSVSILSPLTMNEQINAACSKFLDKELTIDSKKRLILLPKICDIYRNDFG-NGDSNSCLYFCLQFVNSD 579
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BLAST of mRNA_H-paniculata_contig15213.3070.1 vs. uniprot
Match: A0A7S0AUU2_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AUU2_9STRA)

HSP 1 Score: 119 bits (297), Expect = 7.960e-29
Identity = 73/180 (40.56%), Postives = 99/180 (55.00%), Query Frame = 1 
Query:    1 VPFLDQASTFRKVDLSKLDLESDEAICFFANLYHVMVRHMLL--VLGPPSSAKDWPSTFVQVS-YEVGGDVFSLQELEHCVLRGRLPRPNLKDLPKRFAPLPPENDHHYMYKLGKADARMSLFLNNASQSNPPMVYLLTPRALDEQLNRACQTFVDYTVKTDPKKRQLRVHKAFQLYARD 531
            V FLD  S  R ++L  LDL  D   C   NLYH +++H LL  + GPPS  K     F +VS YE+G D+FSL ELE C+LRGR+ RP     P   AP   +N + + Y LG  D R++  L+    S  P V +LTP  +DEQLN A   F+   VK    +R + + K  ++Y +D
Sbjct:   31 VDFLDATSRLRSINLRDLDLSCDATFCLVLNLYHCLLQHSLLLSIEGPPS--KKSVGHFKRVSCYEIGNDIFSLAELECCLLRGRMSRPTNPRFPYVEAPKASQNAYRH-YALGATDPRINFVLHQGDLSGGPTVPVLTPEVMDEQLNAATSAFLSRQVKIYVNRRTIVLPKICEIYRKD 207
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BLAST of mRNA_H-paniculata_contig15213.3070.1 vs. uniprot
Match: B7FYB5_PHATC (tRNA-intron lyase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FYB5_PHATC)

HSP 1 Score: 114 bits (286), Expect = 2.460e-25
Identity = 63/156 (40.38%), Postives = 90/156 (57.69%), Query Frame = 1 
Query:    7 FLDQASTFRKVDLSKLDLESDEAICFFANLYHVMVRHMLLVLGPPSSAKDWPSTFVQVSYEVGGDVFSLQELEHCVLRGRLPRPNLKDLPKRFAPLPPENDHHYMYKLGKADARMSLFLNNASQSNPPMVYLLTPRALDEQLNRACQTFVDYTVKT 474
            FL  A+  ++ ++  L  ES   + FF N+YH M+ H  LVLGPP S+  W   F  ++YEVG DVFSL ELEHC++R ++  P+      RF  LP      Y + L KAD R++  LN  S SNP  +++  P  L+EQL+ AC+ ++   V T
Sbjct:  820 FLSSAAALKRANVRGLPEES--RLAFFLNVYHTMIMHAFLVLGPPGSSLKWIGYFNNIAYEVGDDVFSLTELEHCIIRSKMAYPS--QFISRFV-LPKSQ---YAFALTKADYRINFALNCGSTSNPSCIFIFRPERLNEQLDAACRLYLSSVVVT 967
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BLAST of mRNA_H-paniculata_contig15213.3070.1 vs. uniprot
Match: A0A7S1Z2E3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z2E3_9STRA)

HSP 1 Score: 110 bits (275), Expect = 6.760e-24
Identity = 75/199 (37.69%), Postives = 106/199 (53.27%), Query Frame = 1 
Query:    1 VPFLDQASTFRKVDLSKLDLESDEAICFFANLYHVMVRHMLLVL--GPPSSAKDWPSTFVQVS-YEVGGDVFSLQELEHCVLRGRLPRPNLKDLPKRFAPLPPENDHHYMYKLGKADARMSLFLNNASQSNPPMVYLLTPRALDEQLNRACQTFVDYTVKTDPKKRQLRVHKAFQLYARDL-QPRATSKDMIRYSLRFV 585
            V F+D  S  R + +  LDL   EA C F NLYH +++H LL+   GPPS  K     F++ S YE+GGDVFSL EL+ C++RG++  P +   P  +   P  +  H  Y LG AD R +  LNN  QS P  V +LTP  L+ QL  A   ++   +  D  K  + + K  ++Y  D  Q   TS   + Y L+F+
Sbjct:  852 VSFMDMTSRLRILPIHMLDLNGKEAFCIFVNLYHCLLQHALLLSIDGPPS--KRSVVNFMRCSCYEIGGDVFSLAELQCCIIRGKM-SPAVSAKPP-YVEEPKGSQGHRFYALGIADTRTNFILNNGDQSCPQSVPILTPEDLESQLTEASCIWMKRQLSVDSPKNTVTLPKVCEVYRNDFGQGDLTS--CLMYCLKFL 1044
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BLAST of mRNA_H-paniculata_contig15213.3070.1 vs. uniprot
Match: A0A0L0DNA4_THETB (PH domain-containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DNA4_THETB)

HSP 1 Score: 110 bits (274), Expect = 9.380e-24
Identity = 80/246 (32.52%), Postives = 129/246 (52.44%), Query Frame = 1 
Query:    7 FLDQASTFRKVDLSKLDLESDEAICFFANLYHVMVRHMLLVLGPPSSAKDWPSTFVQVSYEVGGDVFSLQELEHCVLRGRLPRPNLKDLPKRFAP------LPPENDHHYMYKLGKADARMSLFLNNASQSNPPMVYLLTPRALDEQLNRACQTFVDYTVKTDPKKRQLRVHKAFQLYARDLQPRATSKDMIRYSL-----RFVMLD----LSTLDVDFSQVSVRYHPYLLKCHETMNLLDLPASA 699
            FLD  +  + V+L+  DL+ ++ + FF NL+H +++H LLV+G PSSA    S + + SYEV G V SL E++H VLR  + RP  K +   F P      L    +  Y + L   DAR++  +N  ++S+ P + + TP ALDEQL+      V+  V+ +  K  + + +  Q YA+D    A SK  ++Y +     R++  D    L  L    S+ S++Y P+     + + L+D  A A
Sbjct:  977 FLDSTADLKLVELT--DLDENQRLAFFLNLFHTLLQHALLVMGHPSSALSRKSFYNRASYEVAGYVLSLSEIQHSVLRAGMARP--KKIYDFFIPKFGQKRLKLNRNKGYPFALSIRDARVNYAINLGTRSSLPWILVYTPAALDEQLDYVASCHVNAFVELNEAKSAIILPRVCQWYAKDFDHAARSKLAVKYGILRQVARYLDEDPYARLRRLLDAGSECSIKYAPFDWTYWDGLRLVDEQALA 1218
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15213.3070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTB8_9PHAE5.770e-10174.01DUF547 domain-containing protein n=1 Tax=Ectocarpu... [more]
K8YWH0_NANGC3.760e-5345.26DUF547 domain-containing protein (Fragment) n=2 Ta... [more]
W7U430_9STRA3.520e-5045.26DUF547 domain-containing protein n=4 Tax=Monodopsi... [more]
A0A7S3Y6P5_HETAK1.510e-3442.11Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2SG73_9STRA1.140e-3234.98Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S0BZX4_9STRA7.090e-2938.31Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S0AUU2_9STRA7.960e-2940.56Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
B7FYB5_PHATC2.460e-2540.38tRNA-intron lyase n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S1Z2E3_9STRA6.760e-2437.69Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A0L0DNA4_THETB9.380e-2432.52PH domain-containing protein n=1 Tax=Thecamonas tr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15213contigH-paniculata_contig15213:98..4375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.7
Seed ortholog evalue1.5e-23
Seed eggNOG ortholog2850.Phatr45626
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function, DUF547
EggNOG OGs29I52@1,2RRC0@2759,2XF57@2836
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons5
Model size744
Cds size744
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15213.3070.1prot_H-paniculata_contig15213.3070.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15213 98..4375 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929219.2424734-CDS-H-paniculata_contig15213:97..2501622929219.2424734-CDS-H-paniculata_contig15213:97..250Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15213 98..250 +
1691480775.2285752-CDS-H-paniculata_contig15213:97..2501691480775.2285752-CDS-H-paniculata_contig15213:97..250Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15213 98..250 +
1622929219.4896014-CDS-H-paniculata_contig15213:1300..14831622929219.4896014-CDS-H-paniculata_contig15213:1300..1483Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15213 1301..1483 +
1691480775.2417347-CDS-H-paniculata_contig15213:1300..14831691480775.2417347-CDS-H-paniculata_contig15213:1300..1483Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15213 1301..1483 +
1622929219.5049577-CDS-H-paniculata_contig15213:2260..23951622929219.5049577-CDS-H-paniculata_contig15213:2260..2395Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15213 2261..2395 +
1691480775.2538397-CDS-H-paniculata_contig15213:2260..23951691480775.2538397-CDS-H-paniculata_contig15213:2260..2395Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15213 2261..2395 +
1622929219.5215786-CDS-H-paniculata_contig15213:2723..28871622929219.5215786-CDS-H-paniculata_contig15213:2723..2887Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15213 2724..2887 +
1691480775.2701483-CDS-H-paniculata_contig15213:2723..28871691480775.2701483-CDS-H-paniculata_contig15213:2723..2887Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15213 2724..2887 +
1622929219.5325491-CDS-H-paniculata_contig15213:4266..43751622929219.5325491-CDS-H-paniculata_contig15213:4266..4375Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15213 4267..4375 +
1691480775.278697-CDS-H-paniculata_contig15213:4266..43751691480775.278697-CDS-H-paniculata_contig15213:4266..4375Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15213 4267..4375 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15213.3070.1

>prot_H-paniculata_contig15213.3070.1 ID=prot_H-paniculata_contig15213.3070.1|Name=mRNA_H-paniculata_contig15213.3070.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=248bp
VPFLDQASTFRKVDLSKLDLESDEAICFFANLYHVMVRHMLLVLGPPSSA
KDWPSTFVQVSYEVGGDVFSLQELEHCVLRGRLPRPNLKDLPKRFAPLPP
ENDHHYMYKLGKADARMSLFLNNASQSNPPMVYLLTPRALDEQLNRACQT
FVDYTVKTDPKKRQLRVHKAFQLYARDLQPRATSKDMIRYSLRFVMLDLS
TLDVDFSQVSVRYHPYLLKCHETMNLLDLPASADTSTSTDTAEPSSA*
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mRNA from alignment at H-paniculata_contig15213:98..4375+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15213.3070.1 ID=mRNA_H-paniculata_contig15213.3070.1|Name=mRNA_H-paniculata_contig15213.3070.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4278bp|location=Sequence derived from alignment at H-paniculata_contig15213:98..4375+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCCTTTTCTGGATCAGGCGTCGACCTTTCGGAAAGTTGACCTGAGCAA
GCTAGACCTGGAATCGGATGAAGCGATATGCTTCTTCGCAAACTTGTACC
ACGTTATGGTGCGGCACATGCTGCTCGTGCTCGGTCCCCCTTCATCTGCG
AAGGTGACGAATCGAAGAATGGATCAATCCATCACCTGTGTAATATTGTA
GCCCAGACCACACTCTCAGAACAATCGGCGGCCGTTAGTGAACTCTGTGC
GTACTGTAACAACAATCGCACAGACTGAAAGCAGGCTACACGTGAAGATA
GCAATGTTGGTGGTGTCAGGGCATCCATACGAGCAATCGCCCGTTACCCA
CGAAAAGCCAGTCTCTGCGCTTGCAACAACCCCACTCTAAGAACAATGCG
GGTGCCGTGTCGAGGGAGGCTAGTTGACATTGTCACCCCTACTGCATGAC
CACAAAATATTCTCAGAGGTACGGCCACGGTATTGGGGGCGGGAATAGTA
ATATTTTGCATGTCATAGTTGTTATTAGACCGTTGACCAGGCGTCCTCGG
GAGGATAGAAATTTGTTCCTATTAGAGCGATTTCCAATGGCCAATGATTC
TTCCTTGCCTTACGATGGGAGGGGCGTGGCAGGGAGGGTGTTTAGCGATC
GCCGCTCTCCAAAACGACTCCAAGATAAAGCTCAAATCAAAACGTATTGA
ATGACACGTGTTCACGCATCCCCAAAGGTGCACAATGCACGATTCGGAAT
GGCGTTACTATTTAAGGGGGAAATATATATTTTGCCCAGGCGCTCCGCAA
AGCGACTCAACCTTGAAAAATATCGGCTTAAATTACCCCCTCCCAATATG
TTCAGTTTGTGGATAATAACGAAATATCCAGCAGCTTGAGGATGCTGAGT
ATGCCTCCATTTTGTTTTACGACCATTGCCATGTTTTTTAATGTAATTCA
GGCTCCACCCCTAGCGTAGGGCGACTCCTAGCCGCATATTGATGACTGTT
ACTAAATACTTTGGTATTGCGTGCAGCTGCACGTCCTAGCTGCCACGTAT
TACCGCGACCGTTACTGGAATCACCGTGCCGCTGAAGAGAATATTTCATG
GTCGAACAGAGTTATTTTTCCATGTCTAGTGACCTTTCTCCCTCTAAAAC
CTTCAAGTATATATTGCATTTCCTCTGCCCATCTCCTATCCTTCGAACGG
CAGGATTGGCCTTCGACGTTCGTGCAGGTTTCCTACGAAGTTGGCGGAGA
CGTGTTTTCCTTGCAGGAGCTGGAGCACTGCGTGCTGAGAGGCAGACTGC
CAAGGCCTAACCTGAAGGACCTGCCCAAGCGGTTCGCGCCGTTGCCGCCG
GAAAATGACCATCACTATATGTACAAGTTGGGCAAGGTAGGCCGAATCAA
TCGAGCGCATATTTATTGTCTCGCGTGGTCTGGAGCTATGTACTATTATT
GTAGAGCTTCATACTATACCAAAAGGATGAAGGTGTAAGTCACTCGTTAC
GGTCGAAGAAAGAGGTAAGGCAGCGGAAGAGGGGAGATGTTTAACGAGGT
CTACTTCGCAAAACGGCTTGGAAATAGCTCAAATCAAAACCCGTTCACTG
GCATGCATTCACGCATCCCCAATCATTCGGAATGGCTAGATTGCTCGAAG
GGAAAATATGTATTTTGCCCAGCCGTTCCAACAGTCGGCCCAAAACTTGA
AACAAATCGGCTCAATCCCCCCCCCATACAAATGCCCAACTCAAATTCGC
CCTGTTTTTCTGTGTCGTTCTGTTTCTCCCGTACAACACGTGATTTCTCC
TCCTTTTTTTTTTGCGGTCTGCTAGAAGCGGCCTTACGGCTTCTTTTAAC
CCCCCTCTTGATTTTTTCGTGGATGATCTTGTTTACGGCCGCTGTATTGC
AGTTCCTGAGTGTTTGAATGGACAGCATGCGTCACATTACCAAAAAGGCT
GTCGTCTTGTTCACTCGTATATATTTCTGCAGCTTCTCTCTCGCAGCAAG
CGCTCTACAGCACCCTACTCAGCTGAATATATCCTAAGGCTCGGTAACAA
TGACGAGACATCGAGTTTTTTTTTCGACAATTAAGCTCCCCCTTTGCATA
ATGTGTGCTGTGCGTACTACTACTACTACTACTACTACTACTACTACTAA
AACGTCTCATCAGGCTGATGCGAGGATGAGCCTGTTCTTGAACAACGCGT
CTCAGTCTAACCCTCCGATGGTGTATCTGCTTACGCCTCGAGCGTTGGAC
GAGCAGCTAAACCGTGCGTGTCAAACCTTCGTTGACTACACCGTAAAGGT
AAATAACTGACAGTAGAGCTATTTCCCTGCACTCGGCAACTGTGGAGTAT
GGGGGGGGGAGAAATGTGCTTGCCCCTGTTCGGCACTGTGTTATTTATTT
AGTGTGATGAATGCCTGCTGTTCATGTGCTCCTCTTGGCGTGTTTTTTTC
CATTTATGTTTCGGTAAATTGTAGGTAGGTTAATCTCCGCGTTTTCTTTT
ATATCCTGTTCATCTACATGGCAGTTCTTGTACAGCTTGCGTGGAGCATG
ACGCATCCTCTATTTTCACGCTCTGTGTGGCATAACACACACTCTGCTTT
ACACTCTTGTTTCGTTTACGTTGCAGACGGACCCAAAAAAGAGACAACTA
CGGGTGCACAAGGCATTTCAACTCTACGCGAGAGACTTGCAGCCGCGTGC
CACGTCCAAAGACATGATCCGATATAGCTTAAGGTTTGTCATGCTGGACC
TTTCAACTCTCGACGTGGACTTCTCGCAAGTGTCTGTCAGGTAACATTGG
CAAACTTACCAAATACTAGATCGACCTAGCTGTGGCCTATTGCCGCTATA
ATTGGCTATCTCCATAACTTTGTCGCGTGCGAACTCGTCAGTGTTCAGTA
TCCGGTCTGCACTGGGAAGTATGCAAGAATATCGGGAAATTTCAGCCAGA
CTTGAAGTTGGGAGCTCCGTGTGTTACGCGAAGAAGGTGTAACGCTTTAC
TTGCTGTAAAAATCCTTGAACGTATACCGGGGGGCGGAAATACTTTTAAA
CCCGGGTAATATACCTGTATTTTAAGGCGCTGTCTTATTGACAAAGAAAG
TTGGGCCATCGAGAGACCTTGCTGAGGAGATCTGTCTATAGCCAAGCTCT
TTCGATCGCGTAAGGTTGCCGTTCTCGAGATAACATTGTTCGAAAATCGT
TCGCATGACAGTACTTAGTTCCTGAGAGCTGTTGTATATCACCTCGAGCT
GGAAGGGGTAGTCGACCGAGATTTGGATCTGTGCACATTCGGTCCGCGGG
CGGAGAGTTCAGCCGGATATTTTCACACTTTCGACAACAGAAAACGAATT
CAGACGGTACTTTTCCCGTTAGATTTCGCATCTTACTTTGTCATAGTTGA
GCATCTCACATACGGCGTTCGATTTTCTGACAACATTTTGAGAAACTCTT
CGTTGTAAACCAAGCACTATAGATCATTGATTATTGCCGAAGTGTTCGTA
CGGAAAATGTCTTTTTTTGTACATATTCCTATATATGTACAATATTTCTG
CACGTATCCTGTCCGATGGGCGGATGCCTCGCTACATTCTGTCCAAGCAA
CAGAAGCCTTTTGTTGACTGGGCTATACGGCAGCGCTCACACAACAAAGA
CCTTCGTATACTCGCGGTATTTCGTATACCGCGAGGATTGGTACAGCGAG
CCCGGTTCCATCGGAAAATAAAGAAAAAAATTCACGAGACTTGTCTCTCG
GCTGTGGCCGCTTGAATATCGATGCTGGGGGCGTCACCAACCGGACAAGT
GGCAGGAAAAGCTTTACTGCTGGCGGTATTCCTTCCATTTTACCCAGAGA
CCACTTATAGCCCTTAATCTTGTCACTACGGCGCCACTTGGTCATGATCC
ATTTTTAGTCATGATTCGTGTGAATGGGTTGAAAAACATCAATCACCATA
TCGCTCCTTCAGGAACAATCCAATGTAAGAGGTGCGTTGGAGTGTTGAAA
GATTTACCTCAAGTGACTAGATATCCAGTTTGACTCCTGTTGTTTTCGCT
GGGATCGTGTCCAAAAAGTACCGTTTCGGCCTGCGAAGAGGAGACGGAGA
AGTCATGGTTCTCTGTCGAAAGCACACCAGATCATTACTCACTGTTCTCT
TGTGTCCCGTCACTCGCAGGTATCACCCCTACCTGCTCAAGTGCCACGAG
ACGATGAATCTCTTGGATCTGCCTGCCTCCGCAGATACCTCGACGTCTAC
GGACACTGCAGAACCCTCCAGCGCGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig15213:98..4375+

>mRNA_H-paniculata_contig15213.3070.1 ID=mRNA_H-paniculata_contig15213.3070.1|Name=mRNA_H-paniculata_contig15213.3070.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1488bp|location=Sequence derived from alignment at H-paniculata_contig15213:98..4375+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCCTTTTCTGGATCAGGCGTCGACCTTTCGGAAAGTTGACCTGAGCAA
GCTAGACCTGGAATCGGATGAAGCGATATGCTTCTTCGCAAACTTGTACC
ACGTTATGGTGCGGCACATGCTGCTCGTGCTCGGTCCCCCTTCATCTGCG
AAGGTGCCTTTTCTGGATCAGGCGTCGACCTTTCGGAAAGTTGACCTGAG
CAAGCTAGACCTGGAATCGGATGAAGCGATATGCTTCTTCGCAAACTTGT
ACCACGTTATGGTGCGGCACATGCTGCTCGTGCTCGGTCCCCCTTCATCT
GCGAAGGATTGGCCTTCGACGTTCGTGCAGGTTTCCTACGAAGTTGGCGG
AGACGTGTTTTCCTTGCAGGAGCTGGAGCACTGCGTGCTGAGAGGCAGAC
TGCCAAGGCCTAACCTGAAGGACCTGCCCAAGCGGTTCGCGCCGTTGCCG
CCGGAAAATGACCATCACTATATGTACAAGTTGGGCAAGGATTGGCCTTC
GACGTTCGTGCAGGTTTCCTACGAAGTTGGCGGAGACGTGTTTTCCTTGC
AGGAGCTGGAGCACTGCGTGCTGAGAGGCAGACTGCCAAGGCCTAACCTG
AAGGACCTGCCCAAGCGGTTCGCGCCGTTGCCGCCGGAAAATGACCATCA
CTATATGTACAAGTTGGGCAAGGCTGATGCGAGGATGAGCCTGTTCTTGA
ACAACGCGTCTCAGTCTAACCCTCCGATGGTGTATCTGCTTACGCCTCGA
GCGTTGGACGAGCAGCTAAACCGTGCGTGTCAAACCTTCGTTGACTACAC
CGTAAAGGCTGATGCGAGGATGAGCCTGTTCTTGAACAACGCGTCTCAGT
CTAACCCTCCGATGGTGTATCTGCTTACGCCTCGAGCGTTGGACGAGCAG
CTAAACCGTGCGTGTCAAACCTTCGTTGACTACACCGTAAAGACGGACCC
AAAAAAGAGACAACTACGGGTGCACAAGGCATTTCAACTCTACGCGAGAG
ACTTGCAGCCGCGTGCCACGTCCAAAGACATGATCCGATATAGCTTAAGG
TTTGTCATGCTGGACCTTTCAACTCTCGACGTGGACTTCTCGCAAGTGTC
TGTCAGACGGACCCAAAAAAGAGACAACTACGGGTGCACAAGGCATTTCA
ACTCTACGCGAGAGACTTGCAGCCGCGTGCCACGTCCAAAGACATGATCC
GATATAGCTTAAGGTTTGTCATGCTGGACCTTTCAACTCTCGACGTGGAC
TTCTCGCAAGTGTCTGTCAGGTATCACCCCTACCTGCTCAAGTGCCACGA
GACGATGAATCTCTTGGATCTGCCTGCCTCCGCAGATACCTCGACGTCTA
CGGACACTGCAGAACCCTCCAGCGCGTAGGTATCACCCCTACCTGCTCAA
GTGCCACGAGACGATGAATCTCTTGGATCTGCCTGCCTCCGCAGATACCT
CGACGTCTACGGACACTGCAGAACCCTCCAGCGCGTAG
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