mRNA_H-paniculata_contig15204.3065.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15204.3065.1
Unique NamemRNA_H-paniculata_contig15204.3065.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15204.3065.1 vs. uniprot
Match: A0A6H5KV27_9PHAE (Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV27_9PHAE)

HSP 1 Score: 290 bits (743), Expect = 1.490e-86
Identity = 228/449 (50.78%), Postives = 263/449 (58.57%), Query Frame = 1 
Query:    1 TCLTLTLARYYCNLNFHLNVTGDAMGMNMVSKGCEAAVSELRERFRQAQLVTLTGNTCTDKKPSAGNWVEGRGKSVVVEAILSAKTVASVLKTTVANMVECNIVKNLVGSAMAGSIGGFNSHAANV----VAAVFLATGQDPAHTVEGSNCITLMEEIKHGD--TGAGRPGDLRVTVTLPSLLVGTVGGGTGLAAQAACLRLMGIPAQVAGAGG-GRV-------------GSRISKGEGGGGAVRGSGGFSANVGADNDAAAHAISTLPGSTSWTSQAATLSSSQTESPXXXXXXXXXXXXXXXXXXXXXXRM-----ELEAAAGTVNRVRTGVGMGAGFGSAIGARSRAGGTVGNGLNQGWGVHVE----PAAXXXXXXXXXXXXXXXXXXXXXXXXXS--------GARRLACILGAAVMAGELSLLAALTTGDLVSAHMALNRHK 1236
            T +T ++A  +  L F    TG+AMGMNM+SKGCEAAV E+++RF+QA+LV L+GN CTDKK SA NWVEGRGKSVV EA+LSAKTV+SVLKTTV  MVECNI KNLVGSAMAGSIGGFNSHAANV     +AVFLATGQDPAHTVEGS+CITLME++K G+  +G GRPGDLRVTVT+PSLLVGTVGGGTGL AQ+ACLRLMG    V  AGG G V             G++I                S   G D DA +     +PG  S   +            XXXXX             XXXX       E   A G V      +    G  +A  A   A   +    +   GV  +    PAA                  XXXXX  S        GARRLAC++ A VMAGELSLLAALT+ DLV AHMALNR K
Sbjct:   99 TSVTASMAGRHVYLRFKCT-TGNAMGMNMISKGCEAAVREIQKRFKQARLVALSGNVCTDKKASAQNWVEGRGKSVVAEAVLSAKTVSSVLKTTVDKMVECNISKNLVGSAMAGSIGGFNSHAANVRLFLSSAVFLATGQDPAHTVEGSSCITLMEKVKPGEEGSGGGRPGDLRVTVTMPSLLVGTVGGGTGLPAQSACLRLMGCGQSVEDAGGDGGVXXXXXXXXXXXXDGAQIG---------------SQKAGVDGDAVS-----VPGHPSAKGENGXXXXXXXXXXXXXXXSIPGSIDEDTGGNXXXXXXXDGSGEQPTAIGLVAEAAAAISPLPGVIAAAVADEAATTPIARAGDCPVGVVADTPLPPAATPGKGKGKAPGAGARKSGXXXXXPGSSSAAPREKGARRLACVIAATVMAGELSLLAALTSNDLVRAHMALNRKK 526
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BLAST of mRNA_H-paniculata_contig15204.3065.1 vs. uniprot
Match: D8LK73_ECTSI (Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK73_ECTSI)

HSP 1 Score: 261 bits (666), Expect = 4.830e-76
Identity = 137/183 (74.86%), Postives = 156/183 (85.25%), Query Frame = 1 
Query:    1 TCLTLTLARYYCNLNFHLNVTGDAMGMNMVSKGCEAAVSELRERFRQAQLVTLTGNTCTDKKPSAGNWVEGRGKSVVVEAILSAKTVASVLKTTVANMVECNIVKNLVGSAMAGSIGGFNSHAANVVAAVFLATGQDPAHTVEGSNCITLMEEIKHGDTGAG---RPGDLRVTVTLPSLLVGT 540
            T +T +LA  +  L F    TG+AMGMNM+SKGCEAAV E+++RF+QA+LV L+GN CTDKK SA NWVEGRGKSVV EA+LSAKTV+SVLKTTV  MVECNI KNLVGSAMAGSIGGFNSHAANVVAAVFLATGQDPAHTVEGS+CITLME++K G+ G+G   RPGDLRVTVT+PSLL  T
Sbjct:  306 TSVTASLAGRHVYLRFKCT-TGNAMGMNMISKGCEAAVREIQKRFKQARLVALSGNVCTDKKASAQNWVEGRGKSVVAEAVLSAKTVSSVLKTTVDQMVECNISKNLVGSAMAGSIGGFNSHAANVVAAVFLATGQDPAHTVEGSSCITLMEKVKPGEEGSGGGGRPGDLRVTVTMPSLLAAT 487
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BLAST of mRNA_H-paniculata_contig15204.3065.1 vs. uniprot
Match: A0A4V1IQ59_9FUNG (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4V1IQ59_9FUNG)

HSP 1 Score: 221 bits (562), Expect = 1.810e-63
Identity = 111/179 (62.01%), Postives = 141/179 (78.77%), Query Frame = 1 
Query:   61 TGDAMGMNMVSKGCEAAVSELRERFRQAQLVTLTGNTCTDKKPSAGNWVEGRGKSVVVEAILSAKTVASVLKTTVANMVECNIVKNLVGSAMAGSIGGFNSHAANVVAAVFLATGQDPAHTVEGSNCITLMEEIKHGDTGAGRPGDLRVTVTLPSLLVGTVGGGTGLAAQAACLRLMGI 597
            TGDAMGMNM+SKG E+++S L  +F   +++ ++GN CTDKKP+A NW+EGRGKSV  EAI+ A  V SVLKT VA++VE NI KNLVGSAMAGS+GGFN+HAAN+V AVFLATGQDPA  VE SNCITL+E + +G++       LR+T ++P + VGTVGGGT L AQAACL ++G+
Sbjct:  211 TGDAMGMNMISKGTESSLSLLLTQFPDMRIIAVSGNYCTDKKPAAINWIEGRGKSVAAEAIVPASIVRSVLKTEVADLVELNIAKNLVGSAMAGSVGGFNAHAANIVTAVFLATGQDPAQNVESSNCITLLESLNNGES-------LRITCSMPCVEVGTVGGGTALPAQAACLDMLGV 382
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BLAST of mRNA_H-paniculata_contig15204.3065.1 vs. uniprot
Match: A0A6I9NQ43_9TELE (3-hydroxy-3-methylglutaryl-coenzyme A reductase n=1 Tax=Notothenia coriiceps TaxID=8208 RepID=A0A6I9NQ43_9TELE)

HSP 1 Score: 215 bits (548), Expect = 5.200e-63
Identity = 116/197 (58.88%), Postives = 145/197 (73.60%), Query Frame = 1 
Query:    7 LTLTLARYYCNLNFHLNVTGDAMGMNMVSKGCEAAVSELRERFRQAQLVTLTGNTCTDKKPSAGNWVEGRGKSVVVEAILSAKTVASVLKTTVANMVECNIVKNLVGSAMAGSIGGFNSHAANVVAAVFLATGQDPAHTVEGSNCITLMEEIKHGDTGAGRPGDLRVTVTLPSLLVGTVGGGTGLAAQAACLRLMGI 597
            L + LA     + FH + TGDAMGMNM+SKG E A+S L++ F   Q++ ++GN CTDKKP+A NW+EGRGKS V EA + AK V  VLKTT A +VE NI KNLVGSAMAGSIGGFN+HA+N+VAA+++A GQDPA +V  SNCITLME    G TG     DL +T T+PS+ +GTVGGGT L  Q ACLR++G+
Sbjct:   60 LLVGLAGRNLYIRFH-SKTGDAMGMNMISKGTEQALSILQQHFPDVQVIAVSGNFCTDKKPAAINWIEGRGKSAVCEATIPAKVVREVLKTTTAALVEVNISKNLVGSAMAGSIGGFNAHASNLVAAIYIACGQDPAQSVGSSNCITLMEAS--GPTGE----DLYITCTMPSIELGTVGGGTSLPPQQACLRMLGV 249
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BLAST of mRNA_H-paniculata_contig15204.3065.1 vs. uniprot
Match: A0A367IVX2_RHIAZ (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Rhizopus azygosporus TaxID=86630 RepID=A0A367IVX2_RHIAZ)

HSP 1 Score: 214 bits (546), Expect = 1.690e-62
Identity = 107/179 (59.78%), Postives = 136/179 (75.98%), Query Frame = 1 
Query:   61 TGDAMGMNMVSKGCEAAVSELRERFRQAQLVTLTGNTCTDKKPSAGNWVEGRGKSVVVEAILSAKTVASVLKTTVANMVECNIVKNLVGSAMAGSIGGFNSHAANVVAAVFLATGQDPAHTVEGSNCITLMEEIKHGDTGAGRPGDLRVTVTLPSLLVGTVGGGTGLAAQAACLRLMGI 597
            TGDAMGMNM+SKGCE A+S L   F + Q+++L+GN CTDKKP+A NW+EGRGKSVV EA++    V  VLKTTVA +VE NI KNL+GSAMAGS+GGFN+HAAN++ A+++ATGQDPA  VE SNCITLM+ I  G        DL ++ T+PS+ VGT+GGGT L  Q A L ++G+
Sbjct:   96 TGDAMGMNMISKGCEKAMSVLSTHFPEMQIISLSGNYCTDKKPAAINWIEGRGKSVVAEAVIPGAIVQKVLKTTVAALVELNISKNLIGSAMAGSVGGFNAHAANILTAIYIATGQDPAQNVESSNCITLMKAINDGQ-------DLHISCTMPSVEVGTIGGGTILPPQQAMLDMLGV 267
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BLAST of mRNA_H-paniculata_contig15204.3065.1 vs. uniprot
Match: UPI00072DE95A (3-hydroxy-3-methylglutaryl-coenzyme A reductase-like n=1 Tax=Poecilia mexicana TaxID=48701 RepID=UPI00072DE95A)

HSP 1 Score: 216 bits (549), Expect = 2.600e-62
Identity = 111/179 (62.01%), Postives = 138/179 (77.09%), Query Frame = 1 
Query:   61 TGDAMGMNMVSKGCEAAVSELRERFRQAQLVTLTGNTCTDKKPSAGNWVEGRGKSVVVEAILSAKTVASVLKTTVANMVECNIVKNLVGSAMAGSIGGFNSHAANVVAAVFLATGQDPAHTVEGSNCITLMEEIKHGDTGAGRPGDLRVTVTLPSLLVGTVGGGTGLAAQAACLRLMGI 597
            TGDAMGMNM+SKG E A+S L++ F + Q+V ++GN CTDKKP+A NW+EGRGKS V EA +SAK V  VLKTT   ++E NI KNLVGSAMAGSIGGFN+HAAN+VAA+++A GQDPA +V  SNCITLME    G TG     DL ++ T+PS+ VGTVGGGT L  Q ACL+++G+
Sbjct:  162 TGDAMGMNMISKGTEKALSRLQQHFPELQVVAVSGNYCTDKKPAAINWIEGRGKSAVCEATISAKVVQEVLKTTTEALIEVNISKNLVGSAMAGSIGGFNAHAANLVAAIYIACGQDPAQSVSSSNCITLMEPS--GPTGK----DLYISCTMPSIEVGTVGGGTNLPPQQACLKMLGV 334
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BLAST of mRNA_H-paniculata_contig15204.3065.1 vs. uniprot
Match: F4PG87_CAVFA (Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PG87_CAVFA)

HSP 1 Score: 215 bits (548), Expect = 5.330e-62
Identity = 112/179 (62.57%), Postives = 138/179 (77.09%), Query Frame = 1 
Query:   61 TGDAMGMNMVSKGCEAAVSELRERFRQAQLVTLTGNTCTDKKPSAGNWVEGRGKSVVVEAILSAKTVASVLKTTVANMVECNIVKNLVGSAMAGSIGGFNSHAANVVAAVFLATGQDPAHTVEGSNCITLMEEIKHGDTGAGRPGDLRVTVTLPSLLVGTVGGGTGLAAQAACLRLMGI 597
            TGDAMGMNMVSKG E A+  + E F +  +++L+GN CTDKKPSA NW+EGRGKSVV EAI+S   V  VLKT+V ++V  NI KNL+GSAMAGS+GGFN+HA+N+V A+++ATGQDPA  VE SNCITLME+I  G        DL ++VT+PS+ VGTVGGGT L AQAACL L+ I
Sbjct:  155 TGDAMGMNMVSKGVEKALEVITEYFPEIDVLSLSGNVCTDKKPSAINWLEGRGKSVVCEAIISGDIVRDVLKTSVDSLVSLNIDKNLIGSAMAGSVGGFNAHASNIVTALYIATGQDPAQNVESSNCITLMEQINDGK-------DLYISVTMPSIEVGTVGGGTHLPAQAACLDLLKI 326
[Close]
BLAST of mRNA_H-paniculata_contig15204.3065.1 vs. uniprot
Match: M2XG41_GALSU (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XG41_GALSU)

HSP 1 Score: 220 bits (561), Expect = 7.020e-62
Identity = 112/183 (61.20%), Postives = 142/183 (77.60%), Query Frame = 1 
Query:   58 VTGDAMGMNMVSKGCEAAVSELRERFRQAQLVTLTGNTCTDKKPSAGNWVEGRGKSVVVEAILSAKTVASVLKTTVANMVECNIVKNLVGSAMAGSIGGFNSHAANVVAAVFLATGQDPAHTVEGSNCITLMEEIKHGDTGAGRPGDLRVTVTLPSLLVGTVGGGTGLAAQAACLRLMGIPAQ 606
            ++GDAMGMNMVSKG E A+  ++  F + ++V+L+GN C+DKKPSA NW+EGRGK+VV EA++S   V  VLKT VA+MV+CNI KNLVGS MAGS+GGFN+HAAN+VAA+F+ATGQD A  VE S+CITL+E   +G        DLR++VTLP + VGTVGGGT L AQ++CLR MGI  Q
Sbjct:  344 LSGDAMGMNMVSKGTEKALEVIKAHFSEMEVVSLSGNYCSDKKPSAVNWIEGRGKTVVAEAVISGDVVEKVLKTNVASMVDCNIQKNLVGSIMAGSLGGFNAHAANIVAAIFIATGQDAAQVVESSHCITLLEPANNGR-------DLRISVTLPCVEVGTVGGGTVLPAQSSCLRAMGIDPQ 519
[Close]
BLAST of mRNA_H-paniculata_contig15204.3065.1 vs. uniprot
Match: F0ZER0_DICPU (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZER0_DICPU)

HSP 1 Score: 218 bits (554), Expect = 1.350e-61
Identity = 112/179 (62.57%), Postives = 139/179 (77.65%), Query Frame = 1 
Query:   61 TGDAMGMNMVSKGCEAAVSELRERFRQAQLVTLTGNTCTDKKPSAGNWVEGRGKSVVVEAILSAKTVASVLKTTVANMVECNIVKNLVGSAMAGSIGGFNSHAANVVAAVFLATGQDPAHTVEGSNCITLMEEIKHGDTGAGRPGDLRVTVTLPSLLVGTVGGGTGLAAQAACLRLMGI 597
            TGDAMGMNMVSKG E A+  + E F + ++++L+GN CTDKKPSA NW+EGRGKSVV EA++S   V  VLKTTV ++V  N+ KNL+GSAMAGSIGGFN+HA+N+V A+++ATGQDPA  VE SNCITLME I +G        DL ++VT+PS+ VGTVGGGT L AQAACL L+ I
Sbjct:  275 TGDAMGMNMVSKGVEKAMEVISEYFPELEVLSLSGNVCTDKKPSAINWLEGRGKSVVAEAVISGDIVRDVLKTTVDSLVSLNVDKNLIGSAMAGSIGGFNAHASNIVTALYIATGQDPAQNVESSNCITLMESINNGK-------DLYISVTMPSIEVGTVGGGTHLPAQAACLDLLKI 446
[Close]
BLAST of mRNA_H-paniculata_contig15204.3065.1 vs. uniprot
Match: B8C0R4_THAPS (3-hydroxy-3-methylglutaryl coenzyme A reductase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0R4_THAPS)

HSP 1 Score: 213 bits (543), Expect = 1.370e-61
Identity = 111/179 (62.01%), Postives = 135/179 (75.42%), Query Frame = 1 
Query:   61 TGDAMGMNMVSKGCEAAVSELRERFRQAQLVTLTGNTCTDKKPSAGNWVEGRGKSVVVEAILSAKTVASVLKTTVANMVECNIVKNLVGSAMAGSIGGFNSHAANVVAAVFLATGQDPAHTVEGSNCITLMEEIKHGDTGAGRPGDLRVTVTLPSLLVGTVGGGTGLAAQAACLRLMGI 597
            +GDAMGMNM+SKG  A +  LRE+F Q  LV L+GN CTDKK +A NW+EGRGKSVV+EA +    V S LKT+V  +VE N+ KNL+GSAMAG++GGFN+HAAN V AVFLATGQDPA  VE SNCITLME    GD        L ++ T+PS+ VGTVGGGTGL+AQ+ACLR +G+
Sbjct:  146 SGDAMGMNMISKGSLAVIECLREQFPQLSLVALSGNMCTDKKAAAMNWIEGRGKSVVIEATIPKDVVRSTLKTSVPAIVEANVNKNLIGSAMAGTVGGFNAHAANNVTAVFLATGQDPAQNVESSNCITLMEVSPEGD--------LWISCTMPSIEVGTVGGGTGLSAQSACLRAIGV 316
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15204.3065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KV27_9PHAE1.490e-8650.78Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Ta... [more]
D8LK73_ECTSI4.830e-7674.86Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Ta... [more]
A0A4V1IQ59_9FUNG1.810e-6362.013-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]
A0A6I9NQ43_9TELE5.200e-6358.883-hydroxy-3-methylglutaryl-coenzyme A reductase n=... [more]
A0A367IVX2_RHIAZ1.690e-6259.783-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]
UPI00072DE95A2.600e-6262.013-hydroxy-3-methylglutaryl-coenzyme A reductase-li... [more]
F4PG87_CAVFA5.330e-6262.57Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Ta... [more]
M2XG41_GALSU7.020e-6261.203-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]
F0ZER0_DICPU1.350e-6162.573-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]
B8C0R4_THAPS1.370e-6162.013-hydroxy-3-methylglutaryl coenzyme A reductase (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15204contigH-paniculata_contig15204:1555..6179 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score259.2
Seed ortholog evalue3.5e-66
Seed eggNOG ortholog2880.D8LK73
Preferred nameHMGR
KEGG rclassRC00004,RC00644
KEGG koko:K00021
KEGG ReactionR02082
KEGG Pathwayko00900,ko01100,ko01110,ko01130,ko04152,ko04976,map00900,map01100,map01110,map01130,map04152,map04976
KEGG ModuleM00095
Hectar predicted targeting categoryother localisation
EggNOG free text desc.hydroxymethylglutaryl-CoA reductase (NADPH) activity
EggNOG OGsCOG1257@1,KOG2480@2759
EC1.1.1.34
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons5
Model size1347
Cds size1347
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15204.3065.1prot_H-paniculata_contig15204.3065.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15204 1555..6179 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929218.5919745-CDS-H-paniculata_contig15204:1554..16511622929218.5919745-CDS-H-paniculata_contig15204:1554..1651Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15204 1555..1651 -
1691480774.9210598-CDS-H-paniculata_contig15204:1554..16511691480774.9210598-CDS-H-paniculata_contig15204:1554..1651Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15204 1555..1651 -
1622929218.6070952-CDS-H-paniculata_contig15204:2179..27021622929218.6070952-CDS-H-paniculata_contig15204:2179..2702Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15204 2180..2702 -
1691480774.9314823-CDS-H-paniculata_contig15204:2179..27021691480774.9314823-CDS-H-paniculata_contig15204:2179..2702Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15204 2180..2702 -
1622929218.6185553-CDS-H-paniculata_contig15204:3328..36801622929218.6185553-CDS-H-paniculata_contig15204:3328..3680Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15204 3329..3680 -
1691480774.941312-CDS-H-paniculata_contig15204:3328..36801691480774.941312-CDS-H-paniculata_contig15204:3328..3680Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15204 3329..3680 -
1622929218.6292412-CDS-H-paniculata_contig15204:4968..51121622929218.6292412-CDS-H-paniculata_contig15204:4968..5112Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15204 4969..5112 -
1691480774.9581032-CDS-H-paniculata_contig15204:4968..51121691480774.9581032-CDS-H-paniculata_contig15204:4968..5112Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15204 4969..5112 -
1622929218.639746-CDS-H-paniculata_contig15204:5948..61791622929218.639746-CDS-H-paniculata_contig15204:5948..6179Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15204 5949..6179 -
1691480774.970421-CDS-H-paniculata_contig15204:5948..61791691480774.970421-CDS-H-paniculata_contig15204:5948..6179Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15204 5949..6179 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15204.3065.1

>prot_H-paniculata_contig15204.3065.1 ID=prot_H-paniculata_contig15204.3065.1|Name=mRNA_H-paniculata_contig15204.3065.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=449bp
TCLTLTLARYYCNLNFHLNVTGDAMGMNMVSKGCEAAVSELRERFRQAQL
VTLTGNTCTDKKPSAGNWVEGRGKSVVVEAILSAKTVASVLKTTVANMVE
CNIVKNLVGSAMAGSIGGFNSHAANVVAAVFLATGQDPAHTVEGSNCITL
MEEIKHGDTGAGRPGDLRVTVTLPSLLVGTVGGGTGLAAQAACLRLMGIP
AQVAGAGGGRVGSRISKGEGGGGAVRGSGGFSANVGADNDAAAHAISTLP
GSTSWTSQAATLSSSQTESPAGDEGSGADMGSEAAAGSEAESRMELEAAA
GTVNRVRTGVGMGAGFGSAIGARSRAGGTVGNGLNQGWGVHVEPAAAEAE
GAGAGARVEVGGGGVPEPQSGSGARRLACILGAAVMAGELSLLAALTTGD
LVSAHMALNRHKHPHQQADAGAAAEEGSAAVAAAAAVVAPAPAPAPAPG
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mRNA from alignment at H-paniculata_contig15204:1555..6179-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15204.3065.1 ID=mRNA_H-paniculata_contig15204.3065.1|Name=mRNA_H-paniculata_contig15204.3065.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4625bp|location=Sequence derived from alignment at H-paniculata_contig15204:1555..6179- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGTGTCTGACGCTAACCTTGGCGAGGTACTATTGTAACTTGAACTTTCA
TTTGAATGTTACAGGAGACGCGATGGGCATGAACATGGTCAGCAAAGGGT
GCGAAGCAGCGGTGAGCGAGCTCCGTGAACGGTTCAGGCAGGCACAGCTG
GTGACCCTGACGGGGAACACGTGCACCGACAAGAAGCCTTCGGCAGGGAA
TTGGGTCGAGGGACGGGGCAAGTCTGTGGTGGTAAGCTTAAATTACTATT
TCATGTAAATTAAATCTTTGCTATTTTACGCGCGTGACCTACTTGCATGT
CTGTCTCTCAAGGCGTGTGTAAAACGAAACGGAGGTATGCTGAGCATCTT
CAAGCTGTTGGATTACTTGGTTATTATCCACAAACTGAATCAAAGAGGGG
GGGGGTCGCAGTTAGTAGAACTAACTCTGACGCTTGTGTACTGACTCCAG
TGTATCTGCGTTGAGGTTATGGAGCTGACCTCATCTTTTTGTTGTGTACA
TTATTCAGTGAAGTTATATCAATAAGAGGGGACACCGACACAGTGTTCAT
CATTTTCACATTTTGTAAATAGAATCGTGTAGTGTAGGTCTGCTACGCTC
TGCTGTTGCTGCCTTTAGTATTTTACTCAGTCATACGGACGTATAGCATG
TGTTATGCTCCGCTGATTGATTGTTTTTGTGCAACGCGTAGGGCTTGTTC
TCCTGGACTCCGATTGAAACGAAGACAAGTTTAAACGTATTGCATGACGG
TTTATGTTGTGTTTACAAGAGGACTGTATCCGTGACACATCCTTATACGT
ATTCGGTTTGCTGTTGTCGTATTTTCATCTGTGGTACTCTTAGTACGATA
TGATGATTCTTAGTACGGCATTAGGGAGGTTGTGGTCGTCATCGCGTTGA
TTCGGAATATATATATTTTAAGTCTGTACTCAAGTAACTTCCGGAAAATG
AATCTTCGTGGGTTAAGGACAAAATACTGGAAAGTGACTGCACGGGTTAG
CTTGGTAGCCGTGGTGATACTCTACTACTTGTGTTGCTTGTTCGTTTTTG
TGCCCCTATGAACACAGGTGGAGGCAATCTTGTCAGCGAAAACCGTAGCG
TCGGTGCTAAAGACCACCGTGGCAAACATGGTGGAGTGCAACATAGTGAA
GAACCTGGTGGGCTCCGCCATGGCCGGGAGCATCGGAGGCTTCAATTCTC
ACGCCGCTAATGTGAGTAGATCAGCAGGAGGAAGAGTGTGAAGCATTAGC
GGGTATACAAGCACTCAAATGTGTGTGTGTGCGTGTCTGTCTGTCTGTTT
CAAATCTGTATCATCAACTCTTTTTTTGGCACTGGAGGCGCTGCTACGAG
AACCACCAAAATGATTTTGATGAAATAAAATGTTCATCAAGTTGCCGCCA
TGGTTGTATGCAAAAGAATTGTGCTACCCCCTCCTGTCTGTGCTGTGTGT
GCTTCTTGTCTATGCTGGATTGGCTGCCTAGACAGCAGCGGCTGCCCATT
CCCGCAATCGTGTCATACATCTTGTGTTTTCCCTTTTTATTTTCTTTTTT
TTCAGGTGGGGATTAGGATTTAGGTGGGGATTTAGATGAAGACCGGCGGT
GAAAGGCGACAATGAAGTTGTAAGCATCACTGCGTGTAGATGGAGCTACA
AGCACCACTGCAAAGTAAATGAATGAATGTTGAAGAAGAACCGCTGATGC
CGCGACACTGAGCTGTGCCTTCTTTTGTGTGAACGTAGCGAATCATTGCT
AGTGCAGCGAGTGTTGTGCGCAGGTCGTGAACAACACGAGGGCTGCATCA
TCGCGCGCTGGCTTCTACTTCTAAATACCGACTGTAATCATGAAAAAAAA
ATGGCGTCTGACCTCGTTCATAAATCAACTGTGTAAGCCGCGTTTCACAA
TGTCGTACCCCTGTTGGGCCGGTCAAATATTTCACGCATCGCGATTACCG
ATTACGTGATGTGCAGTATTCACATATGTTTGTGTTCTACATGACCCTTA
TGCTGTATCGTCACGTTCACGCGCGCGTGTGTGTGTGTTTCTCTCTCTTG
TTTCTCTCTCTTGTTTCTCTCTCTATGTGTCATGATATCCATACGTCGAG
TCGGGATCTACTTCAAAACACAGGCGTTGGGATAGCTACTTTCGAACACA
ATGGGTGTAGTTCACCAACAAACGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGACATTCAGTTACTCGAACATCCTTTGGACGCGATAC
GCGTGGGGACTTCAAACGCCGCAGTAATAGTTGTGTAAGGCTGAACCGCA
GATTAGATATCACCCAAAATTATCGGCCAGTCGCGCTCACCCGGTACCCC
CCCTGTCCCCCCTTTAGCTCCATTCTTTCGAGGGTTGCGTGGTCAATCTT
GTAATAACTACTGCATGAAAAACGTTAGTACCCCCTCCCCCCTCCCGTCC
CCGCTTGACCCATTTTTGTGTGGTCGCGTCATCGTCATCCCACACACAGG
TAGTGGCCGCAGTCTTTCTCGCCACCGGCCAAGACCCCGCCCACACAGTC
GAGGGCAGCAACTGCATCACTCTCATGGAAGAGATTAAACATGGCGACAC
GGGAGCCGGCCGCCCGGGCGACCTTCGCGTTACCGTCACTCTGCCGTCCT
TGTTGGTGGGCACCGTCGGGGGTGGAACCGGCCTCGCCGCACAGGCCGCT
TGTCTCAGGCTCATGGGGATTCCTGCTCAGGTTGCCGGGGCGGGGGGCGG
ACGGGTGGGATCCCGAATAAGTAAAGGAGAGGGAGGGGGGGGAGCAGTAA
GAGGCTCTGGTGGATTTTCCGCCAATGTCGGGGCTGACAATGATGCTGCT
GGTGTGTATGCATGGTTCCTGTTATTGATGCTTCCTAGTGTCTTGCCTTG
AGTTCCTCGAATCGGCTTGGCTTGCCTCGGCTTAACTAGATTTTTTTTTT
TTTTTTTTTCTGATGTGCTGCTTCTACCGCCGCCGCTGCCACCGCCGCCG
CTGCTGCTTCTAGTACTATCGTTCTTTCTTTCGGGCATTTTTTTTTTGTC
GCGTTACGTTTTGTAATACTCTTTTTTTTTGCTCATTCTTTACCTGTTTA
ACAATGGTGCTGCTGTGCTTTCCCAGTAGCCCCCCCCCAATGACGGCCCA
TTCATTCTCAGGTTTTCAAGATGTCTTTGCTCCAGCTTTCTGCTTGGCCA
TGGTCATGACTATCACATTGAGAACCGGCTCCGACCTTTAATTACATCGA
ACTCGTCCCGGTTATGCACGATGTGCCTTCTTTCGATTTTCTTCATAAAG
ATGCCACAGGTAATAATACTATAGATGACACTCTGAATGGAAGCGAGGAT
GGTAACTACGCCCGTGACTCGAGCAGCGGCGCTGACCAACTAAAGGCAAT
ATGGGCAGTCGCCGAGGCCGCTTCGGCCGCGGCCGCAGCCGTTGCAGCCG
AGGAAGCAGCAGAAGCGGAGGCAGCAGCCCACGCAATATCCACTCTTCCA
GGGTCAACTTCATGGACATCGCAGGCAGCAACGTTAAGTAGTTCCCAGAC
CGAAAGCCCAGCGGGAGATGAGGGGTCGGGGGCAGATATGGGATCAGAGG
CTGCAGCGGGCTCGGAGGCGGAGTCTAGGATGGAATTGGAAGCGGCAGCA
GGGACGGTAAATAGGGTGAGAACCGGGGTGGGAATGGGAGCTGGGTTCGG
CAGTGCAATCGGGGCGCGATCTAGGGCGGGAGGCACGGTAGGTAACGGAC
TTAACCAGGGGTGGGGAGTTCATGTTGAACCCGCGGCGGCGGAGGCGGAG
GGGGCTGGTGCAGGGGCTAGGGTGGAGGTGGGAGGGGGCGGCGTCCCAGA
GCCACAGTCAGGTTCCGGAGCCAGGCGCTTGGCTTGTATTCTCGGTGCCG
CGGTGATGGCGGGAGAGCTCTCTCTCCTAGCCGCTCTGACAACTGGGGAT
CTTGTCAGCGCTCACATGGCGTTGAATAGACATAAACACCCACATCAGCA
GTTGCCGCCGCTGTCATCGCCGCCTCCGCCGCATCATCAGCAGCAACAAC
AACAGCTCCAGGAACAGCAACCACAACCGCAACCACTCCCACAACAGCAA
CAACAACAACAGGAGCCACAGCAACAGCAGCAACAGCAGCAACAGCAGCA
GCAGCAACATCATCTCCCCGATTCCGCAGGTGCCACAAACGGTGTATCAG
GCTTCGCTGCCCTGAGCGCTGCCATGATCAGCACCGGGGATACTTCGGTA
TCAGCAAGGATGACGGAGTTTGGAAAAACCGGCAGCGACAGCGGCGGTGG
ATGTGGGTGGGGGGAAAATGTCGACTCTGGGGTAATGCAACCGGAAGACT
TGCAGCTCGCCGTAGCGGCGCCACAGCCAGCCTCGGTAGAGCAACATGGG
CAAGAAGTTATGCACATGCAGCAGCATCCGGAGCAGCAGCACACGGCAGC
AATGCAGCCGGGGCTTGCGGCGATACACGCGGCCGTGCAAACGGCGCCGC
GTATGAATGTGCCCGAGGTGTCACGAAGAGCGGATGCAGGAGCCGCGGCA
GAAGAGGGATCGGCGGCAGTGGCAGCGGCGGCGGCGGTCGTGGCGCCGGC
GCCGGCGCCGGCGCCGGCGCCGGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig15204:1555..6179-

>mRNA_H-paniculata_contig15204.3065.1 ID=mRNA_H-paniculata_contig15204.3065.1|Name=mRNA_H-paniculata_contig15204.3065.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2694bp|location=Sequence derived from alignment at H-paniculata_contig15204:1555..6179- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGTGTCTGACGCTAACCTTGGCGAGGTACTATTGTAACTTGAACTTTCA
TTTGAATGTTACAGGAGACGCGATGGGCATGAACATGGTCAGCAAAGGGT
GCGAAGCAGCGGTGAGCGAGCTCCGTGAACGGTTCAGGCAGGCACAGCTG
GTGACCCTGACGGGGAACACGTGCACCGACAAGAAGCCTTCGGCAGGGAA
TTGGGTCGAGGGACGGGGCAAGTCTGTGGTGACGTGTCTGACGCTAACCT
TGGCGAGGTACTATTGTAACTTGAACTTTCATTTGAATGTTACAGGAGAC
GCGATGGGCATGAACATGGTCAGCAAAGGGTGCGAAGCAGCGGTGAGCGA
GCTCCGTGAACGGTTCAGGCAGGCACAGCTGGTGACCCTGACGGGGAACA
CGTGCACCGACAAGAAGCCTTCGGCAGGGAATTGGGTCGAGGGACGGGGC
AAGTCTGTGGTGGTGGAGGCAATCTTGTCAGCGAAAACCGTAGCGTCGGT
GCTAAAGACCACCGTGGCAAACATGGTGGAGTGCAACATAGTGAAGAACC
TGGTGGGCTCCGCCATGGCCGGGAGCATCGGAGGCTTCAATTCTCACGCC
GCTAATGTGGAGGCAATCTTGTCAGCGAAAACCGTAGCGTCGGTGCTAAA
GACCACCGTGGCAAACATGGTGGAGTGCAACATAGTGAAGAACCTGGTGG
GCTCCGCCATGGCCGGGAGCATCGGAGGCTTCAATTCTCACGCCGCTAAT
GTAGTGGCCGCAGTCTTTCTCGCCACCGGCCAAGACCCCGCCCACACAGT
CGAGGGCAGCAACTGCATCACTCTCATGGAAGAGATTAAACATGGCGACA
CGGGAGCCGGCCGCCCGGGCGACCTTCGCGTTACCGTCACTCTGCCGTCC
TTGTTGGTGGGCACCGTCGGGGGTGGAACCGGCCTCGCCGCACAGGCCGC
TTGTCTCAGGCTCATGGGGATTCCTGCTCAGGTTGCCGGGGCGGGGGGCG
GACGGGTGGGATCCCGAATAAGTAAAGGAGAGGGAGGGGGGGGAGCAGTA
AGAGGCTCTGGTGGATTTTCCGCCAATGTCGGGGCTGACAATGATGCTGC
TGGTAGTGGCCGCAGTCTTTCTCGCCACCGGCCAAGACCCCGCCCACACA
GTCGAGGGCAGCAACTGCATCACTCTCATGGAAGAGATTAAACATGGCGA
CACGGGAGCCGGCCGCCCGGGCGACCTTCGCGTTACCGTCACTCTGCCGT
CCTTGTTGGTGGGCACCGTCGGGGGTGGAACCGGCCTCGCCGCACAGGCC
GCTTGTCTCAGGCTCATGGGGATTCCTGCTCAGGTTGCCGGGGCGGGGGG
CGGACGGGTGGGATCCCGAATAAGTAAAGGAGAGGGAGGGGGGGGAGCAG
TAAGAGGCTCTGGTGGATTTTCCGCCAATGTCGGGGCTGACAATGATGCT
GCTGCCCACGCAATATCCACTCTTCCAGGGTCAACTTCATGGACATCGCA
GGCAGCAACGTTAAGTAGTTCCCAGACCGAAAGCCCAGCGGGAGATGAGG
GGTCGGGGGCAGATATGGGATCAGAGGCTGCAGCGGGCTCGGAGGCGGAG
TCTAGGATGGAATTGGAAGCGGCAGCAGGGACGGTAAATAGGGTGAGAAC
CGGGGTGGGAATGGGAGCTGGGTTCGGCAGTGCAATCGGGGCGCGATCTA
GGGCGGGAGGCACGGTAGGTAACGGACTTAACCAGGGGTGGGGAGTTCAT
GTTGAACCCGCGGCGGCGGAGGCGGAGGGGGCTGGTGCAGGGGCTAGGGT
GGAGGTGGGAGGGGGCGGCGTCCCAGAGCCACAGTCAGGTTCCGGAGCCA
GGCGCTTGGCTTGTATTCTCGGTGCCGCGGTGATGGCGGGAGAGCTCTCT
CTCCTAGCCGCTCTGACAACTGGGGATCTTGTCAGCGCTCACATGGCGTT
GAATAGACATAAACACCCACATCAGCACCCACGCAATATCCACTCTTCCA
GGGTCAACTTCATGGACATCGCAGGCAGCAACGTTAAGTAGTTCCCAGAC
CGAAAGCCCAGCGGGAGATGAGGGGTCGGGGGCAGATATGGGATCAGAGG
CTGCAGCGGGCTCGGAGGCGGAGTCTAGGATGGAATTGGAAGCGGCAGCA
GGGACGGTAAATAGGGTGAGAACCGGGGTGGGAATGGGAGCTGGGTTCGG
CAGTGCAATCGGGGCGCGATCTAGGGCGGGAGGCACGGTAGGTAACGGAC
TTAACCAGGGGTGGGGAGTTCATGTTGAACCCGCGGCGGCGGAGGCGGAG
GGGGCTGGTGCAGGGGCTAGGGTGGAGGTGGGAGGGGGCGGCGTCCCAGA
GCCACAGTCAGGTTCCGGAGCCAGGCGCTTGGCTTGTATTCTCGGTGCCG
CGGTGATGGCGGGAGAGCTCTCTCTCCTAGCCGCTCTGACAACTGGGGAT
CTTGTCAGCGCTCACATGGCGTTGAATAGACATAAACACCCACATCAGCA
AGCGGATGCAGGAGCCGCGGCAGAAGAGGGATCGGCGGCAGTGGCAGCGG
CGGCGGCGGTCGTGGCGCCGGCGCCGGCGCCGGCGCCGGCGCCGGGTAGC
GGATGCAGGAGCCGCGGCAGAAGAGGGATCGGCGGCAGTGGCAGCGGCGG
CGGCGGTCGTGGCGCCGGCGCCGGCGCCGGCGCCGGCGCCGGGT
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