mRNA_H-paniculata_contig15187.3060.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15187.3060.1
Unique NamemRNA_H-paniculata_contig15187.3060.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15187.3060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15187contigH-paniculata_contig15187:2481..3728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size499
Cds size273
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15187.3060.1prot_H-paniculata_contig15187.3060.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15187 2736..3728 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929217.5194657-UTR-H-paniculata_contig15187:2480..26291622929217.5194657-UTR-H-paniculata_contig15187:2480..2629Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15187 2481..2629 +
1691480774.383693-UTR-H-paniculata_contig15187:2480..26291691480774.383693-UTR-H-paniculata_contig15187:2480..2629Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15187 2481..2629 +
1622929217.5319798-UTR-H-paniculata_contig15187:2660..27351622929217.5319798-UTR-H-paniculata_contig15187:2660..2735Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15187 2661..2735 +
1691480774.3948984-UTR-H-paniculata_contig15187:2660..27351691480774.3948984-UTR-H-paniculata_contig15187:2660..2735Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15187 2661..2735 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929217.546158-CDS-H-paniculata_contig15187:2735..27601622929217.546158-CDS-H-paniculata_contig15187:2735..2760Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15187 2736..2760 +
1691480774.4049492-CDS-H-paniculata_contig15187:2735..27601691480774.4049492-CDS-H-paniculata_contig15187:2735..2760Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15187 2736..2760 +
1622929217.5640993-CDS-H-paniculata_contig15187:3480..37281622929217.5640993-CDS-H-paniculata_contig15187:3480..3728Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15187 3481..3728 +
1691480774.4162297-CDS-H-paniculata_contig15187:3480..37281691480774.4162297-CDS-H-paniculata_contig15187:3480..3728Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15187 3481..3728 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15187.3060.1

>prot_H-paniculata_contig15187.3060.1 ID=prot_H-paniculata_contig15187.3060.1|Name=mRNA_H-paniculata_contig15187.3060.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
MCGMTDEAGVILQGTTKAKKIIAERGKKVGRHGALQLPGEHSRWSPLYTR
PGPPCHPQSSSMGNGCKRRGSVPVTTGFRTQCTPRPTCLPC
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mRNA from alignment at H-paniculata_contig15187:2481..3728+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15187.3060.1 ID=mRNA_H-paniculata_contig15187.3060.1|Name=mRNA_H-paniculata_contig15187.3060.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1248bp|location=Sequence derived from alignment at H-paniculata_contig15187:2481..3728+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAAGATTGAAGACACGTTGTTGTGGGCCGCGCATCGGGGTGGGTAGAGC
GGAGCTGATGGAAGATGTTCGTGTGCTCTGCAACGATGATCGCAAGTGGC
TCGATCTCTTCTTCCCGAGGCACCCTCGTCTGTCGGAGCGCCGTAGCGGC
ATCTGCGAAGCAAACAGGATCACGATTGACAATGAACCCCGCGCTTGAGA
GCACTCTCCACCAGCTGGACGGCAATGTTGACCAACCTACAGCTATGGGC
GGACTATGTGTGGAATGACCGACGAAGCAGGTGAACAATCGCGTGATGCA
GGTACAGTACGGTAGGTCCTCCCAGGAGGGCGCTTCCCACGTACGGACCC
CCGAGGGCATTCTTTCGGGTAAGAAACAGGTAATTTGCACCAGATGTAAT
TGTCGTTTAATTTTTTTCAACCCCCAGAAGGCTGAGGCAAAAACCTTTAC
CAATGTACCGATGCTTCCATACATGAGTATTTGACCGAAGTATTTCTTTA
CATTTCCTTCTAACAGAACAGAGTTATTTATTCCTCTGCGGGATAGGCGC
CACCCCGGTTCGGCCGAACCAAGTAGGCAGCGTGGGGGTTGCACTCGCTA
AAAGACCTCTGACTAGACTTCAAGTCATATGCTCAGTTCACGAGCTACCC
TACCCGTTCGGGCGTAGGTCCGTGATATAATTGTCGTTCTTGCCATTTTT
AACCTTGAAAAAGACCTTCGCCTAGCGGAGAAAAGACTTTACGCCCCGCC
ACTTTGTCGCCTACGGGAAAACTTCCCGGCTCCCCCTGAAAATCTTCCAG
TGGCAATCTGCCGAATGCACTAATAATTCCGGCGGAAACCGATATTTAAC
TTTTTTTCCGCCGGCCGTCGATATAATGACCGAAGTTATCCCCCTCCCCC
TAGTAATTAATGCCATCCGTCTTTACGGTAAATTGATGGCCGGTCGCCTG
CGATAAATGGCTGACATTTTGAATTGGAAATTTGAACCTCATGGTTTCAG
GTGTCATTCTCCAAGGTACTACTAAGGCGAAGAAGATAATTGCAGAAAGG
GGGAAGAAGGTGGGTCGGCACGGAGCGCTCCAACTCCCGGGAGAACATTC
ACGGTGGTCGCCACTGTATACGCGGCCGGGGCCGCCATGCCATCCACAGT
CGTCTTCAATGGGCAACGGGTGCAAGCGGCGTGGCTCGGTACCGGTGACA
ACGGGATTCCGGACGCAATGTACACCGCGACCGACTTGTCTTCCATGC
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Coding sequence (CDS) from alignment at H-paniculata_contig15187:2481..3728+

>mRNA_H-paniculata_contig15187.3060.1 ID=mRNA_H-paniculata_contig15187.3060.1|Name=mRNA_H-paniculata_contig15187.3060.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig15187:2481..3728+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTGGAATGACCGACGAAGCAGATGTGTGGAATGACCGACGAAGCAG
GTGTCATTCTCCAAGGTACTACTAAGGCGAAGAAGATAATTGCAGAAAGG
GGGAAGAAGGTGGGTCGGCACGGAGCGCTCCAACTCCCGGGAGAACATTC
ACGGTGGTCGCCACTGTATACGCGGCCGGGGCCGCCATGCCATCCACAGT
CGTCTTCAATGGGCAACGGGTGCAAGCGGCGTGGCTCGGTACCGGTGACA
ACGGGATTCCGGACGCAATGTACACCGCGACCGACTTGTCTTCCATGCGT
GTCATTCTCCAAGGTACTACTAAGGCGAAGAAGATAATTGCAGAAAGGGG
GAAGAAGGTGGGTCGGCACGGAGCGCTCCAACTCCCGGGAGAACATTCAC
GGTGGTCGCCACTGTATACGCGGCCGGGGCCGCCATGCCATCCACAGTCG
TCTTCAATGGGCAACGGGTGCAAGCGGCGTGGCTCGGTACCGGTGACAAC
GGGATTCCGGACGCAATGTACACCGCGACCGACTTGTCTTCCATGC
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