mRNA_H-paniculata_contig15186.3059.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15186.3059.1
Unique NamemRNA_H-paniculata_contig15186.3059.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig15186.3059.1 vs. uniprot
Match: A0A6H5JUL1_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUL1_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 8.270e-15
Identity = 59/123 (47.97%), Postives = 76/123 (61.79%), Query Frame = 2 
Query:  695 LEADAAEGWRGGGSVDEGTNSGATVKVINGSGEMSREMSSTIAGGEVLAKQASLSSGVAGVGALHVSGGDALSRQSSLDIHTIMRMAYSDEELKQKEGGSDDAMDVALAFGEGPAKELFGVEL 1063
            + A    G  G   V     +GA   VI G GE+SR  S  I+G       A++SS     GA   S G ALSRQSSLDI+TIM+M  SDE+L++ EGG+ DA+D AL +GEGPAKE+FG++L
Sbjct:  811 IPAGLVAGRSGSSDVAGSRGAGAGAPVIIGGGEISRGPSFGISG------PAAVSSIFGPAGA---SSGGALSRQSSLDINTIMQMVTSDEQLRKNEGGTPDAIDHALEYGEGPAKEMFGIDL 924
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15186.3059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JUL1_9PHAE8.270e-1547.97Zn(2)-C6 fungal-type domain-containing protein n=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15186contigH-paniculata_contig15186:3348..4422 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1075
Cds size654
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929217.4666793-UTR-H-paniculata_contig15186:3347..37681622929217.4666793-UTR-H-paniculata_contig15186:3347..3768Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15186 3348..3768 +
1691480774.356858-UTR-H-paniculata_contig15186:3347..37681691480774.356858-UTR-H-paniculata_contig15186:3347..3768Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15186 3348..3768 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929217.4788578-CDS-H-paniculata_contig15186:3768..44221622929217.4788578-CDS-H-paniculata_contig15186:3768..4422Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15186 3769..4422 +
1691480774.3662624-CDS-H-paniculata_contig15186:3768..44221691480774.3662624-CDS-H-paniculata_contig15186:3768..4422Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15186 3769..4422 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15186.3059.1prot_H-paniculata_contig15186.3059.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15186 3769..4422 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15186.3059.1

>prot_H-paniculata_contig15186.3059.1 ID=prot_H-paniculata_contig15186.3059.1|Name=mRNA_H-paniculata_contig15186.3059.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=218bp
MPTPHLLYRFPFLRILVVNGSGTTPILGGGSLQRVVSTTSELSLMKASLD
AGLNELRADLEDLGGLATLGSGELDDLDPLGIEFDLSHFKDLEADAAEGW
RGGGSVDEGTNSGATVKVINGSGEMSREMSSTIAGGEVLAKQASLSSGVA
GVGALHVSGGDALSRQSSLDIHTIMRMAYSDEELKQKEGGSDDAMDVALA
FGEGPAKELFGVELNAL*
back to top

mRNA from alignment at H-paniculata_contig15186:3348..4422+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15186.3059.1 ID=mRNA_H-paniculata_contig15186.3059.1|Name=mRNA_H-paniculata_contig15186.3059.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1075bp|location=Sequence derived from alignment at H-paniculata_contig15186:3348..4422+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGAGAGAGGTGGGGTTCATTCGAGAATTAGTTTATTTTATTGTGGTGTC
TTTGGCTTGTAAAATGGGCTGTGGGCGTGAGTGTGGGGGTTTCAGGGTGA
ATTGTCGTGGTGTGATTGCCACTGAAATGTTTTCTTGTGTTGCTGAACAG
GACAAGGTGGGTACGTCGCTGAAAACACGGCGCGCGATTGCGCTCGCCTT
TTGTTGAATCTAGCATCGAGAATTTCTTTTGGAATGTGGAGAAAAGGTGG
CTGGGGCAGGGGGTTTCGGGAGAAACTTTTTAGTAAGCGTGGCGTACGAT
GGGAGATGCAGTGATGAAGGACACATGTGTTGCTGTAAATATATTAATGC
GCTTGTCATATATACATCGGACCTCTAGTACGCCATATTTGGAAACCGCT
TGACCTCCTTCCACCGTGGTCATGCCCACCCCCCACCTACTTTACCGTTT
TCCCTTCCTCCGAATATTAGTGGTGAATGGAAGCGGCACAACACCAATCC
TGGGCGGTGGAAGCTTGCAGCGAGTAGTTTCCACTACCAGCGAGCTAAGC
CTCATGAAAGCTTCCTTGGATGCCGGCCTGAACGAGCTAAGAGCTGATCT
GGAGGACCTCGGTGGCCTGGCTACGCTAGGCAGCGGAGAACTAGACGACC
TGGATCCTCTAGGGATAGAATTTGATCTCAGCCACTTCAAGGACTTGGAG
GCGGATGCTGCCGAGGGGTGGAGAGGTGGCGGCAGTGTGGATGAAGGGAC
TAACAGCGGGGCCACGGTGAAGGTTATAAATGGAAGCGGGGAGATGTCTC
GGGAGATGTCTTCCACGATTGCCGGCGGGGAGGTTCTTGCCAAGCAGGCG
TCTTTATCTTCTGGGGTTGCCGGGGTTGGCGCCCTTCATGTCAGTGGGGG
AGATGCGCTGTCGCGCCAGTCTTCGCTGGATATCCACACCATCATGCGAA
TGGCATATTCTGATGAGGAGCTGAAGCAAAAAGAAGGCGGATCAGATGAC
GCTATGGATGTGGCATTGGCGTTCGGGGAAGGGCCCGCTAAGGAGCTGTT
CGGCGTTGAACTTAACGCGTTGTAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig15186:3348..4422+

>mRNA_H-paniculata_contig15186.3059.1 ID=mRNA_H-paniculata_contig15186.3059.1|Name=mRNA_H-paniculata_contig15186.3059.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1308bp|location=Sequence derived from alignment at H-paniculata_contig15186:3348..4422+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCACCCCCCACCTACTTTACCGTTTTCCCTTCCTCCGAATATTAGT
GGTGAATGGAAGCGGCACAACACCAATCCTGGGCGGTGGAAGCTTGCAGC
GAGTAGTTTCCACTACCAGCGAGCTAAGCCTCATGAAAGCTTCCTTGGAT
GCCGGCCTGAACGAGCTAAGAGCTGATCTGGAGGACCTCGGTGGCCTGGC
TACGCTAGGCAGCGGAGAACTAGACGACCTGGATCCTCTAGGGATAGAAT
TTGATCTCAGCCACTTCAAGGACTTGGAGGCGGATGCTGCCGAGGGGTGG
AGAGGTGGCGGCAGTGTGGATGAAGGGACTAACAGCGGGGCCACGGTGAA
GGTTATAAATGGAAGCGGGGAGATGTCTCGGGAGATGTCTTCCACGATTG
CCGGCGGGGAGGTTCTTGCCAAGCAGGCGTCTTTATCTTCTGGGGTTGCC
GGGGTTGGCGCCCTTCATGTCAGTGGGGGAGATGCGCTGTCGCGCCAGTC
TTCGCTGGATATCCACACCATCATGCGAATGGCATATTCTGATGAGGAGC
TGAAGCAAAAAGAAGGCGGATCAGATGACGCTATGGATGTGGCATTGGCG
TTCGGGGAAGGGCCCGCTAAGGAGCTGTTCGGCGTTGAACTTAACGCGTT
GTAGATGCCCACCCCCCACCTACTTTACCGTTTTCCCTTCCTCCGAATAT
TAGTGGTGAATGGAAGCGGCACAACACCAATCCTGGGCGGTGGAAGCTTG
CAGCGAGTAGTTTCCACTACCAGCGAGCTAAGCCTCATGAAAGCTTCCTT
GGATGCCGGCCTGAACGAGCTAAGAGCTGATCTGGAGGACCTCGGTGGCC
TGGCTACGCTAGGCAGCGGAGAACTAGACGACCTGGATCCTCTAGGGATA
GAATTTGATCTCAGCCACTTCAAGGACTTGGAGGCGGATGCTGCCGAGGG
GTGGAGAGGTGGCGGCAGTGTGGATGAAGGGACTAACAGCGGGGCCACGG
TGAAGGTTATAAATGGAAGCGGGGAGATGTCTCGGGAGATGTCTTCCACG
ATTGCCGGCGGGGAGGTTCTTGCCAAGCAGGCGTCTTTATCTTCTGGGGT
TGCCGGGGTTGGCGCCCTTCATGTCAGTGGGGGAGATGCGCTGTCGCGCC
AGTCTTCGCTGGATATCCACACCATCATGCGAATGGCATATTCTGATGAG
GAGCTGAAGCAAAAAGAAGGCGGATCAGATGACGCTATGGATGTGGCATT
GGCGTTCGGGGAAGGGCCCGCTAAGGAGCTGTTCGGCGTTGAACTTAACG
CGTTGTAG
back to top