mRNA_H-paniculata_contig15167.3053.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15167.3053.1
Unique NamemRNA_H-paniculata_contig15167.3053.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15167.3053.1 vs. uniprot
Match: D8LNH9_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNH9_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 1.050e-43
Identity = 70/95 (73.68%), Postives = 83/95 (87.37%), Query Frame = 1 
Query:    1 QRSNGVLLISWPRWFDWIFRFIRPLLSESTKSKITAASAANVYQTLLSKIDNDQIPKEYGGASEYALGDHPWEASTVGMRENAVKVLQEHSMEME 285
            QRS  +LL+SWPRWFDWIFRFIRPLLSESTKSK+T+ +A +VY+TLLSKIDNDQIPKEYGGASEYALG+HP+E   V MR  A+KVL+E  ++ME
Sbjct:    4 QRSTHLLLLSWPRWFDWIFRFIRPLLSESTKSKMTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYE---VDMRNGALKVLEEKGIDME 95
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BLAST of mRNA_H-paniculata_contig15167.3053.1 vs. uniprot
Match: A0A6H5K175_9PHAE (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K175_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 7.970e-40
Identity = 69/95 (72.63%), Postives = 84/95 (88.42%), Query Frame = 1 
Query:    1 QRSNGVLLISWPRWFDWIFRFIRPLLSESTKSKITAASAANVYQTLLSKIDNDQIPKEYGGASEYALGDHPWEASTVGMRENAVKVLQEHSMEME 285
            +RS  +LL+SWPRWFDWIFRFIRPLLSESTKSK+T+ +A +VY+TLLSKIDNDQIPKEYGGASEYALG+HP+EA  V MR  A++VL+E  ++ME
Sbjct:  857 ERSTHLLLLSWPRWFDWIFRFIRPLLSESTKSKMTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYEAIEVDMRNGALRVLEEKGIDME 951
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BLAST of mRNA_H-paniculata_contig15167.3053.1 vs. uniprot
Match: A0A6H5LC05_9PHAE (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC05_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 1.770e-36
Identity = 65/95 (68.42%), Postives = 82/95 (86.32%), Query Frame = 1 
Query:    1 QRSNGVLLISWPRWFDWIFRFIRPLLSESTKSKITAASAANVYQTLLSKIDNDQIPKEYGGASEYALGDHPWEASTVGMRENAVKVLQEHSMEME 285
            +RS  ++L+SWPRWFDWI+RFIRPL+SESTKSK+T+ +A +VY+TLLSKIDNDQIPKEYGGASEYALG+HP+E   V MR + V VL+E+ + ME
Sbjct:  524 ERSAHLMLLSWPRWFDWIYRFIRPLISESTKSKMTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYE---VAMRNSVVTVLEENDVAME 615
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BLAST of mRNA_H-paniculata_contig15167.3053.1 vs. uniprot
Match: D7G352_ECTSI (Phosphatidylinositol transfer protein SEC14 and related proteins n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G352_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 1.430e-35
Identity = 60/76 (78.95%), Postives = 71/76 (93.42%), Query Frame = 1 
Query:    1 QRSNGVLLISWPRWFDWIFRFIRPLLSESTKSKITAASAANVYQTLLSKIDNDQIPKEYGGASEYALGDHPWEAST 228
            QRS  +LL+SWPRWFDWI+RFIRPLLSESTKSK+T+ +A +VY+TLLSKIDNDQIPKEYGGASEYALG+HP+E+ T
Sbjct:  298 QRSAHLLLLSWPRWFDWIYRFIRPLLSESTKSKMTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYESDT 373
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BLAST of mRNA_H-paniculata_contig15167.3053.1 vs. uniprot
Match: D8LL64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL64_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 7.230e-15
Identity = 32/43 (74.42%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:  100 ITAASAANVYQTLLSKIDNDQIPKEYGGASEYALGDHPWEAST 228
            +T+ +A +VY+TLLSKIDNDQIPKEYGGASEYALG+HP+E  T
Sbjct:    1 MTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYEGDT 43
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BLAST of mRNA_H-paniculata_contig15167.3053.1 vs. uniprot
Match: A0A7S1UMG2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UMG2_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.480e-7
Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 1 
Query:   22 LISWPRWFDWIFRFIRPLLSESTKSKITAASAANVYQTLLSK-IDNDQIPKEYGGASEYALGDHPWEASTVGMRENA 249
            L++ P W    F   R +L ES K  I + S +    T L K ID++QIPKEYGG+S+YALG+HP+E   VG+++ A
Sbjct:  536 LVNSPWWLAGAFSGFRSILPESVKVDILSESQS---VTALRKFIDDNQIPKEYGGSSQYALGEHPYE---VGLKDLA 606
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BLAST of mRNA_H-paniculata_contig15167.3053.1 vs. uniprot
Match: A0A178DSV1_9PLEO (CRAL/TRIO domain-containing protein n=1 Tax=Pyrenochaeta sp. DS3sAY3a TaxID=765867 RepID=A0A178DSV1_9PLEO)

HSP 1 Score: 50.8 bits (120), Expect = 3.990e-5
Identity = 24/71 (33.80%), Postives = 40/71 (56.34%), Query Frame = 1 
Query:    1 QRSNGVLLISWPRWFDWIFRFIRPLLSESTKSKITAASAANVYQTLLSKIDNDQIPKEYGGASEYALGDHP 213
            +  + + ++  P +F  ++ +I+      T SKI   S ANVY TL   ID++ IPK+YGG+ ++  G  P
Sbjct:  221 ETLDRIFIVGAPAFFPTVWGWIKRWFDPITVSKIFILSPANVYPTLSQYIDDENIPKKYGGSLDFEWGSMP 291
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BLAST of mRNA_H-paniculata_contig15167.3053.1 vs. uniprot
Match: A0A7S1ZXQ5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZXQ5_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 7.660e-5
Identity = 24/62 (38.71%), Postives = 34/62 (54.84%), Query Frame = 1 
Query:   34 PRWFDWIFRFIRPLLSESTKSKITAASAANVYQTLLSKIDNDQIPKEYGGASEYALGDHPWE 219
            P W    + +    L ES    + ++S +     L   +D+DQIPKEYGG+S Y LG+HP E
Sbjct:  297 PFWLAGSYSYANRFLPESVAVSMMSSSKSAAEGGLRDFVDDDQIPKEYGGSSPYKLGEHPLE 358
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15167.3053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LNH9_ECTSI1.050e-4373.68CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K175_9PHAE7.970e-4072.63CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5LC05_9PHAE1.770e-3668.42CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
D7G352_ECTSI1.430e-3578.95Phosphatidylinositol transfer protein SEC14 and re... [more]
D8LL64_ECTSI7.230e-1574.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1UMG2_9STRA1.480e-745.45Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A178DSV1_9PLEO3.990e-533.80CRAL/TRIO domain-containing protein n=1 Tax=Pyreno... [more]
A0A7S1ZXQ5_9STRA7.660e-538.71Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15167contigH-paniculata_contig15167:302..1968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCRAL-TRIO domain
Ec32 orthologEc-24_002880.1
Exons3
Model size303
Cds size303
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15167.3053.1prot_H-paniculata_contig15167.3053.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15167 302..1968 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929215.828352-CDS-H-paniculata_contig15167:301..4001622929215.828352-CDS-H-paniculata_contig15167:301..400Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15167 302..400 +
1691480773.8389482-CDS-H-paniculata_contig15167:301..4001691480773.8389482-CDS-H-paniculata_contig15167:301..400Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15167 302..400 +
1622929215.8477435-CDS-H-paniculata_contig15167:1400..15291622929215.8477435-CDS-H-paniculata_contig15167:1400..1529Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15167 1401..1529 +
1691480773.8484836-CDS-H-paniculata_contig15167:1400..15291691480773.8484836-CDS-H-paniculata_contig15167:1400..1529Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15167 1401..1529 +
1622929215.8843865-CDS-H-paniculata_contig15167:1893..19681622929215.8843865-CDS-H-paniculata_contig15167:1893..1968Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15167 1894..1968 +
1691480773.856692-CDS-H-paniculata_contig15167:1893..19681691480773.856692-CDS-H-paniculata_contig15167:1893..1968Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15167 1894..1968 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15167.3053.1

>prot_H-paniculata_contig15167.3053.1 ID=prot_H-paniculata_contig15167.3053.1|Name=mRNA_H-paniculata_contig15167.3053.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
QRSNGVLLISWPRWFDWIFRFIRPLLSESTKSKITAASAANVYQTLLSKI
DNDQIPKEYGGASEYALGDHPWEASTVGMRENAVKVLQEHSMEMEVETDP
*
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mRNA from alignment at H-paniculata_contig15167:302..1968+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15167.3053.1 ID=mRNA_H-paniculata_contig15167.3053.1|Name=mRNA_H-paniculata_contig15167.3053.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1667bp|location=Sequence derived from alignment at H-paniculata_contig15167:302..1968+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCGCTCAAACGGTGTGCTGCTCATCTCGTGGCCCCGATGGTTCGATTG
GATCTTTCGTTTTATCCGCCCGCTGCTGTCAGAGTCCACCAAGAGCAAGG
TGATTGGAGCCACACTGAGTCCCATATAGGGAAACAGGGGCATGGGTAGG
GGGAGGGTTGTGGCTGGACAATCTCTTCAGCACCCAGGTTGATGGGGATT
CTCTAATGGTTTGATTTTTTTTTTTTTTTCGAATAACAAGTGACAATTTG
TGAGGTGTATCAGTGTAGAGTCAGGGTATGGTGTGCGGCCAAGAATGGTT
GGAAGACATGGTCCCTTATTTTTTTTTTTCCGGTACACGTATCGTGTTGA
ACCAGCTTACATTTAACGTGGCTCATCCATGGATATCATGCCAGAAATGG
ATCATTGGCCATTCACCCACGGTCAAATGGCTGAGGATCTGACTTTTTGC
CCTTGTTTCTTAAGAGTTGAACGTTTCTTTATTCTCTGCTGTCCACGGTA
AACTTGCTCACGGCTGTGGTTGTGGGCGTGGGCTGTGGTTGCCTTTCAAA
GAAGCCTGATCGTTACCTCGCCTCCTACTGCGTCATCATTCAGGGGTATT
GACTTGCGTTTTTTTGGGGGGGGGAGAGGGTGAGACGTGAAGCGTTCTTG
TTTCTCTTCTTGGTTCGAAGTATTGGTGCTTCCATTGATATCCATATTTT
CCCCGGGTGGAGTCTCTTCGTCAATATTTCTGTATGTAATAGCGGGGGGA
GTTGAGCGCTTGGATGCCTTTCTCTAGGATCTGATGTTCCATTCTCAGCT
GTTGCAGTTCGTTTGTCACAGGAAGTGGGTGTATGCCCATCTTGGCAATT
TTTGTTGAAGGAATTCCGAATGACTATGAGCGCCAGTAGGTTTTCGACAA
ATTATTTTTCATTCTGTGTGAGTTTTCTCCCACTGTATTGTTGCACATGA
TTTTAACAATTCGCTGCTACGTATATTGGCCTTCCCAAGATCGGCAAGCA
CAATCGTGTTTTAAAGCAACTGCTGCTGCCACTATGGTGGGACACAACCT
GACTCATTCTTGCGTAATTACCCGGAAAATGACCGTCTGAAATGTGCAGA
TCACTGCCGCCTCGGCTGCCAATGTCTACCAAACGTTGCTCTCCAAGATC
GACAACGACCAGATCCCTAAGGAATACGGGGGGGCTTCGGAGTACGCATT
GGGTGACCACCCATGGGAGGCAAGTACTGTACAACAGAAACTGAGCCCTA
CTTGTTGGCTGTCGAGGCTCCGAGGTCGTGCAGCTGAAGTCCACCTCTCG
TACCGTGTCCCACAGCTAAATTTGACGTTGCCGGCATATGGTGGGGTCGC
TTCGTGATGAATTCTGAAAAGCTGCCTCTTCCAAAAGCCTCGAAATATAC
TTGGATCTGTTTTGGTTTTTCGTCGGTGTGATAGCGTGCTTTGTCGTGCT
TCGTCGTGCTACACATGTGTAGAAAACACAAGATAGTGATAGTCGAATCC
AGTTATGTGGTTAGTTGTGTGCTATCGTTCATGGGGTCATCTCAATTAAA
CAGTTGATGAAATCCAACGTTTTTTTTTTTTTTTGCATTCAGGTGGGCAT
GCGGGAAAACGCCGTCAAAGTGCTGCAGGAGCACAGCATGGAGATGGAAG
TGGAGACTGATCCATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig15167:302..1968+

>mRNA_H-paniculata_contig15167.3053.1 ID=mRNA_H-paniculata_contig15167.3053.1|Name=mRNA_H-paniculata_contig15167.3053.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig15167:302..1968+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCGCTCAAACGGTGTGCTGCTCATCTCGTGGCCCCGATGGTTCGATTG
GATCTTTCGTTTTATCCGCCCGCTGCTGTCAGAGTCCACCAAGAGCAAGC
AGCGCTCAAACGGTGTGCTGCTCATCTCGTGGCCCCGATGGTTCGATTGG
ATCTTTCGTTTTATCCGCCCGCTGCTGTCAGAGTCCACCAAGAGCAAGAT
CACTGCCGCCTCGGCTGCCAATGTCTACCAAACGTTGCTCTCCAAGATCG
ACAACGACCAGATCCCTAAGGAATACGGGGGGGCTTCGGAGTACGCATTG
GGTGACCACCCATGGGAGGCAAGTACTATCACTGCCGCCTCGGCTGCCAA
TGTCTACCAAACGTTGCTCTCCAAGATCGACAACGACCAGATCCCTAAGG
AATACGGGGGGGCTTCGGAGTACGCATTGGGTGACCACCCATGGGAGGCA
AGTACTGTGGGCATGCGGGAAAACGCCGTCAAAGTGCTGCAGGAGCACAG
CATGGAGATGGAAGTGGAGACTGATCCATGAGTGGGCATGCGGGAAAACG
CCGTCAAAGTGCTGCAGGAGCACAGCATGGAGATGGAAGTGGAGACTGAT
CCATGA
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