mRNA_H-paniculata_contig1516.3050.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1516.3050.1 vs. uniprot
Match: D7FMQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMQ5_ECTSI) HSP 1 Score: 192 bits (488), Expect = 1.680e-49 Identity = 166/489 (33.95%), Postives = 236/489 (48.26%), Query Frame = 2
Query: 326 ICVLEGTLLTNGDLKGSWRMRRGDSLSNEFRMVLMDRGVYDGGFNITTVNSDDPTTTSLQEVHDRWFAFDWCSTTARSSNIWGRGQNLRFGECHLLGSHDAITQTVVLYKVEEAELRRAQIYARDPSTILTRRTPASSLPETRQQRQQQAMATRNGKAAMSPSVSASPTGESTAYTKQPHSCSSTGGDFVVAASAVVETASAGTNYRSVKGKRRIYPPGHPAYNRTRA-------QPNNTVRILGAI------------------SSCVSSDSGSGSDSDGSRSSNRDIEQGQAALG----SKHKETGSPLNKTKAPAIRGTLPGFSG-FEDDEDTDHQDKGKRKDDIIDLAVRAAKMQKDKTEILENFSALANSLGNAKTDFEQRISKTTGEELAMLEACRAIRRKREDLEAGWKVVNVRLERAKKDEEQLLKAWNDKWAYEVQPFIAQHEKEVKRKAEEXXXXXXXXXXXXLELQQEFAQLHNVKKI 1702
+ +LEGTLLTNGD+KGSWR RR D +S +F MVLMD+GVYDGGFN+ N+ P+ S+QEVHD+W +F+W TT S N+WGRG N +FGE + +G HD + +V+YKV EAE+RRAQ +A+ TI T A LP +A+P+ A K+ S ++ A+AV TA G R+ P + A R A Q N TV + C S D +G G L HKE + PA LPGFSG FED D + D++ DL++ A++Q++K +I E+ A K +++ ++ K +E ML A + +R++ + E + ++ + +E+ L WN+KW +V PFIAQ E+ VK+KAEE XXXXXXX +LH+VK+I
Sbjct: 1 MALLEGTLLTNGDIKGSWRARREDEVSQDFLMVLMDKGVYDGGFNLQLPNTR-PSAPSVQEVHDKWHSFEWVETTKSSCNVWGRGLNNQFGEFYTIGVHDPRQRRIVIYKVCEAEMRRAQAFAQ--MTI----TSAGRLP------------------------AAAPSDPGLAAPKRTRSATAK-------AAAVAATA----------GGRQKRPRAYDASPREMAAAATLLYQQNLTVETGACXXXXXXXXXXXXGCYPRVDAFCPSYDGDAGGXXXXXXXXXXPALGGGRPLAFPAPQVHKENPARPTPVPIPAEVRALPGFSGRFEDASTVDFANASM--DELADLSILGARLQREKVKIQEDARAQRQPFEEQKKEYQSKVQKGRADEAMMLRAVQELRKQMLEDERKLESATQCVKSYEAEEQHALMLWNEKWETQVAPFIAQCEQGVKKKAEELEIRTXXXXXXXXXXXXXXERLHSVKQI 439
BLAST of mRNA_H-paniculata_contig1516.3050.1 vs. uniprot
Match: A0A6H5JEN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEN2_9PHAE) HSP 1 Score: 185 bits (469), Expect = 9.780e-47 Identity = 145/446 (32.51%), Postives = 220/446 (49.33%), Query Frame = 2
Query: 284 RRERPLREYVPNLYICVLEGTLLTNGDLK-GSWRMRRGDSLSNEFRMVLMDRGVYDGGFNITTVNSDDPTTTSLQEVHDRWFAFDWCSTTARSSNIWGRGQNLRFGECHLLGSHDAITQTVVLYKVEEAELRRAQIYARDPSTILTRRTPASSLPETRQQRQQQAMATRNGKA-AMSPSVSASPTGESTAYTKQPHSCSSTGGDFVVAASAVVE---TASAGTNYRSVKGKRRIYPPGHPAYNR-TRAQPNNTVRILGAISSCVSSDSGSG-SDSDGSRSSNRDIEQGQAALGSK--HKETGSPLNKTKAPAIRGTLPGFSG-FEDDEDTDHQDKGKRKDDIIDLAVRAAKMQKDKTEILENFSALANSLGNAKTDFEQRISKTTGEELAMLEACRAIRRKREDLEAGWKVVNVRLERAKKDEEQLLKAWNDKWAYEVQPFIAQHE 1591
R+E+ L ++P Y+ +LEGTLLTNGD+K GSWR RR D +S +F MVLMD+GVYDGGFN+ N+ P+ S+QEVHD+W +F+W TT + N+WGRG+N +FGE + +G HD + +V+YKV EAE+RRAQ +A+ TI TPA LP A R A A + KQP + ++ + AA+ + + T G +P + + + SG + +GS AL + HKE + PA LPGFSG FED D + D++ DL++ A++Q++K +I E+ A K +++ ++ K +E ML A + +R++ + E + ++ + +E+ L WN+KW +V PFIAQ E
Sbjct: 15 RKEKSLHSFIPTSYMALLEGTLLTNGDIKDGSWRPRREDDVSQDFLMVLMDKGVYDGGFNLQVPNTR-PSAPSVQEVHDKWHSFEWVETTTSTCNVWGRGRNNQFGEFYTIGVHDPRQRRIVIYKVCEAEMRRAQAFAQ--ITI----TPAGCLPAAAPSNPGLAAPKRTRLATAKAXXXXXXXXXXXXXXQKQPRTYDASPREMAAAATLMYQQNLTVETGAXXXXXXXXXXXXXGCYPRVDAFCPSNDGDAXXXXXXXXXXXXXXVRSGLMNEEGSXXXXXXXXXRPLALPAPQVHKENPARPTPVPIPAEVRALPGFSGRFEDASTMDFANASM--DELADLSILGARLQREKVKIQEDARAQRQPFEEQKKEYQSKVQKGRADEAMMLRAVQELRKQMLEDERKLESATQCVKSYEAEEQHALMLWNEKWETQVAPFIAQCE 451 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1516.3050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1516.3050.1 >prot_H-paniculata_contig1516.3050.1 ID=prot_H-paniculata_contig1516.3050.1|Name=mRNA_H-paniculata_contig1516.3050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=576bp MKPMTLQRHKDTAREQIGTQQSLSSDSESESDEPIEVEAMTSTEFIDVSSback to top mRNA from alignment at H-paniculata_contig1516:8519..23239+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1516.3050.1 ID=mRNA_H-paniculata_contig1516.3050.1|Name=mRNA_H-paniculata_contig1516.3050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=14721bp|location=Sequence derived from alignment at H-paniculata_contig1516:8519..23239+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1516:8519..23239+ >mRNA_H-paniculata_contig1516.3050.1 ID=mRNA_H-paniculata_contig1516.3050.1|Name=mRNA_H-paniculata_contig1516.3050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3456bp|location=Sequence derived from alignment at H-paniculata_contig1516:8519..23239+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |