mRNA_H-paniculata_contig1516.3049.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1516.3049.1
Unique NamemRNA_H-paniculata_contig1516.3049.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1516.3049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1516contigH-paniculata_contig1516:2495..3141 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size285
Cds size258
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1516.3049.1prot_H-paniculata_contig1516.3049.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1516 2509..3128 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929215.2328546-UTR-H-paniculata_contig1516:2494..25081622929215.2328546-UTR-H-paniculata_contig1516:2494..2508Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1516 2495..2508 -
1691480773.550061-UTR-H-paniculata_contig1516:2494..25081691480773.550061-UTR-H-paniculata_contig1516:2494..2508Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1516 2495..2508 -
1622929215.26883-UTR-H-paniculata_contig1516:3128..31411622929215.26883-UTR-H-paniculata_contig1516:3128..3141Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1516 3129..3141 -
1691480773.578977-UTR-H-paniculata_contig1516:3128..31411691480773.578977-UTR-H-paniculata_contig1516:3128..3141Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1516 3129..3141 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929215.2478147-CDS-H-paniculata_contig1516:2508..27451622929215.2478147-CDS-H-paniculata_contig1516:2508..2745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1516 2509..2745 -
1691480773.5606434-CDS-H-paniculata_contig1516:2508..27451691480773.5606434-CDS-H-paniculata_contig1516:2508..2745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1516 2509..2745 -
1622929215.2588415-CDS-H-paniculata_contig1516:3107..31281622929215.2588415-CDS-H-paniculata_contig1516:3107..3128Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1516 3108..3128 -
1691480773.5690022-CDS-H-paniculata_contig1516:3107..31281691480773.5690022-CDS-H-paniculata_contig1516:3107..3128Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1516 3108..3128 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1516.3049.1

>prot_H-paniculata_contig1516.3049.1 ID=prot_H-paniculata_contig1516.3049.1|Name=mRNA_H-paniculata_contig1516.3049.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
MCRVRLQARPVFAGPFRGQVRQPGSQAIPRVVVQAEGSTQPRRQEDLRAD
HDQRAFPRPRRRRPDQFTTGLEHTDILMQGTDLSV*
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mRNA from alignment at H-paniculata_contig1516:2495..3141-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1516.3049.1 ID=mRNA_H-paniculata_contig1516.3049.1|Name=mRNA_H-paniculata_contig1516.3049.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=647bp|location=Sequence derived from alignment at H-paniculata_contig1516:2495..3141- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAAGCATTCGAGATGTGCAGAGTGCGACTGCAGGTGTCTAGGTCGCAAC
TAGTGCAGTCGAGGGAGGCGTATGTATTCGCGTTTGCTGTCTCATTTACG
GGTCAAGGTTGCATAGACGCAGTAGCTTGGGGTGTGATAAGCGAATTCAT
CCACATCCAGGCGATCGTTTTAGCAAGACCTCTCTTGCGAGTCTAACAAT
GGCACTGCTGTTGTAGTGCGTCTTGCGGCAGGAAGCCGTGAATTTTACCG
ACCTCGTAACTCTAGCATTCAGAGTAACGAGTCGAAGGGTGGCATAAACA
GGGAGCTGTGTCCTTACAGAAGCAGTAGTCAACGCCACTGTTTGTTTTTG
CTGCAACACGGCTTGCGAAAATTCCTTGATCTTTGTACGATTGTAGGCGA
GACCGGTGTTTGCGGGGCCGTTTCGGGGGCAGGTTCGACAGCCAGGATCC
CAAGCAATACCGCGAGTGGTTGTCCAAGCTGAAGGCAGTACTCAACCTCG
GCGACAAGAAGATCTTCGAGCTGATCATGACCAACGAGCGTTTCCACGCC
CTCGCCGACGAAGACCAGACCAATTTACAACTGGCCTCGAGCACACTGAT
ATTTTAATGCAGGGGACAGACCTATCGGTTTGATAGGGGCAAAGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1516:2495..3141-

>mRNA_H-paniculata_contig1516.3049.1 ID=mRNA_H-paniculata_contig1516.3049.1|Name=mRNA_H-paniculata_contig1516.3049.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig1516:2495..3141- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCAGAGTGCGACTGCAGATGTGCAGAGTGCGACTGCAGGCGAGACC
GGTGTTTGCGGGGCCGTTTCGGGGGCAGGTTCGACAGCCAGGATCCCAAG
CAATACCGCGAGTGGTTGTCCAAGCTGAAGGCAGTACTCAACCTCGGCGA
CAAGAAGATCTTCGAGCTGATCATGACCAACGAGCGTTTCCACGCCCTCG
CCGACGAAGACCAGACCAATTTACAACTGGCCTCGAGCACACTGATATTT
TAATGCAGGGGACAGACCTATCGGTTTGAGCGAGACCGGTGTTTGCGGGG
CCGTTTCGGGGGCAGGTTCGACAGCCAGGATCCCAAGCAATACCGCGAGT
GGTTGTCCAAGCTGAAGGCAGTACTCAACCTCGGCGACAAGAAGATCTTC
GAGCTGATCATGACCAACGAGCGTTTCCACGCCCTCGCCGACGAAGACCA
GACCAATTTACAACTGGCCTCGAGCACACTGATATTTTAATGCAGGGGAC
AGACCTATCGGTTTGA
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