mRNA_H-paniculata_contig15147.3042.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15147.3042.1
Unique NamemRNA_H-paniculata_contig15147.3042.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15147.3042.1 vs. uniprot
Match: A0A6H5JUD9_9PHAE (Methionine synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUD9_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 3.270e-55
Identity = 85/89 (95.51%), Postives = 89/89 (100.00%), Query Frame = 1 
Query:    1 FYVSMRHCKPFCLGLNCALGATQMRPFLQRLAKVAECFVHVYSNAGLPNAMGGYDDTPEDMARDNLLFAEEGLINMLGGCCGSTPAHIK 267
            FYVSMRHCKPFC+GLNCALGA+QMRPFLQRLA+VAECFVHVYSNAGLPNAMGGYDDTPEDMARDNLLFA+EGLINMLGGCCGSTPAHIK
Sbjct:  274 FYVSMRHCKPFCVGLNCALGASQMRPFLQRLAQVAECFVHVYSNAGLPNAMGGYDDTPEDMARDNLLFAQEGLINMLGGCCGSTPAHIK 362
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BLAST of mRNA_H-paniculata_contig15147.3042.1 vs. uniprot
Match: D7FUT0_ECTSI (Methionine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUT0_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 7.270e-55
Identity = 86/89 (96.63%), Postives = 89/89 (100.00%), Query Frame = 1 
Query:    1 FYVSMRHCKPFCLGLNCALGATQMRPFLQRLAKVAECFVHVYSNAGLPNAMGGYDDTPEDMARDNLLFAEEGLINMLGGCCGSTPAHIK 267
            FYVSMRHCKPFC+GLNCALGA+QMRPFLQRLAKVAECFVHVYSNAGLPNAMGGYD+TPEDMARDNLLFAEEGLINMLGGCCGSTPAHIK
Sbjct:  192 FYVSMRHCKPFCIGLNCALGASQMRPFLQRLAKVAECFVHVYSNAGLPNAMGGYDETPEDMARDNLLFAEEGLINMLGGCCGSTPAHIK 280
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BLAST of mRNA_H-paniculata_contig15147.3042.1 vs. uniprot
Match: A0A7S2XWE9_9STRA (Methionine synthase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWE9_9STRA)

HSP 1 Score: 177 bits (448), Expect = 1.320e-49
Identity = 76/89 (85.39%), Postives = 86/89 (96.63%), Query Frame = 1 
Query:    1 FYVSMRHCKPFCLGLNCALGATQMRPFLQRLAKVAECFVHVYSNAGLPNAMGGYDDTPEDMARDNLLFAEEGLINMLGGCCGSTPAHIK 267
            FYVS+RHCKPFC+GLNCALGATQM+PFL+RLA VAECFVHVYSNAGLPNAMGGYDDTP+DMAR+NL+FA+E L+NM+GGCCGSTP HIK
Sbjct:  255 FYVSIRHCKPFCVGLNCALGATQMKPFLRRLAVVAECFVHVYSNAGLPNAMGGYDDTPDDMARENLIFADEKLVNMIGGCCGSTPPHIK 343
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BLAST of mRNA_H-paniculata_contig15147.3042.1 vs. uniprot
Match: A0A836CPG7_9STRA (Methionine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPG7_9STRA)

HSP 1 Score: 169 bits (429), Expect = 4.820e-47
Identity = 74/89 (83.15%), Postives = 81/89 (91.01%), Query Frame = 1 
Query:    1 FYVSMRHCKPFCLGLNCALGATQMRPFLQRLAKVAECFVHVYSNAGLPNAMGGYDDTPEDMARDNLLFAEEGLINMLGGCCGSTPAHIK 267
            FYVSMRH KPFC+GLNCALGA QM+PFL+RL+ VAECFVHVYSNAGLPNAMGGYDDTP DMARDN  FA EG++NM+GGCCGSTP HIK
Sbjct:  256 FYVSMRHVKPFCIGLNCALGAQQMKPFLRRLSMVAECFVHVYSNAGLPNAMGGYDDTPSDMARDNHEFASEGMVNMIGGCCGSTPQHIK 344
[Close]
BLAST of mRNA_H-paniculata_contig15147.3042.1 vs. uniprot
Match: A0A7S1UDH7_9STRA (Methionine synthase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UDH7_9STRA)

HSP 1 Score: 168 bits (425), Expect = 1.660e-46
Identity = 73/88 (82.95%), Postives = 82/88 (93.18%), Query Frame = 1 
Query:    1 FYVSMRHCKPFCLGLNCALGATQMRPFLQRLAKVAECFVHVYSNAGLPNAMGGYDDTPEDMARDNLLFAEEGLINMLGGCCGSTPAHI 264
            FYVS+RH KPFC+GLNCALGA QM+PFL+RL+ VAECFVHVY+NAGLPNAMGGYDDTPEDMAR+NL+FA E LINM+GGCCGSTP HI
Sbjct:  142 FYVSIRHAKPFCVGLNCALGADQMKPFLRRLSNVAECFVHVYANAGLPNAMGGYDDTPEDMARENLIFANERLINMIGGCCGSTPPHI 229
[Close]
BLAST of mRNA_H-paniculata_contig15147.3042.1 vs. uniprot
Match: A0A097PA47_9STRA (Methionine synthase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A097PA47_9STRA)

HSP 1 Score: 165 bits (418), Expect = 1.460e-45
Identity = 72/89 (80.90%), Postives = 79/89 (88.76%), Query Frame = 1 
Query:    1 FYVSMRHCKPFCLGLNCALGATQMRPFLQRLAKVAECFVHVYSNAGLPNAMGGYDDTPEDMARDNLLFAEEGLINMLGGCCGSTPAHIK 267
            FYVS+RHC PFC+GLNCALGA QMRPFLQRL+KVAECFV VYSNAGLPNAMGGYDDTP DMA DN +F +E L+NM+GGCCGSTP HI 
Sbjct:  253 FYVSVRHCNPFCVGLNCALGAKQMRPFLQRLSKVAECFVSVYSNAGLPNAMGGYDDTPADMAADNSVFVKESLVNMIGGCCGSTPDHIN 341
[Close]
BLAST of mRNA_H-paniculata_contig15147.3042.1 vs. uniprot
Match: A0A7S4DBJ3_HETAK (Methionine synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBJ3_HETAK)

HSP 1 Score: 164 bits (416), Expect = 2.730e-45
Identity = 71/88 (80.68%), Postives = 79/88 (89.77%), Query Frame = 1 
Query:    1 FYVSMRHCKPFCLGLNCALGATQMRPFLQRLAKVAECFVHVYSNAGLPNAMGGYDDTPEDMARDNLLFAEEGLINMLGGCCGSTPAHI 264
            FY S+RH KPFC+GLNCALGA QM+PFL+RLA V ECFVHVYSNAGLPNAMGGYDDTPEDMAR+N +FA E L+NM+GGCCGSTP HI
Sbjct:  258 FYASVRHAKPFCVGLNCALGAAQMKPFLRRLANVVECFVHVYSNAGLPNAMGGYDDTPEDMARENHIFASERLVNMIGGCCGSTPPHI 345
[Close]
BLAST of mRNA_H-paniculata_contig15147.3042.1 vs. uniprot
Match: A0A7S3JQY4_9STRA (Methionine synthase (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JQY4_9STRA)

HSP 1 Score: 160 bits (406), Expect = 4.440e-44
Identity = 69/88 (78.41%), Postives = 78/88 (88.64%), Query Frame = 1 
Query:    1 FYVSMRHCKPFCLGLNCALGATQMRPFLQRLAKVAECFVHVYSNAGLPNAMGGYDDTPEDMARDNLLFAEEGLINMLGGCCGSTPAHI 264
            FY S+RH KP C+GLNCALGA+ M PFL+RLA  AECFVHVYSNAGLPNAMGGYDDTP+DMAR+NL+FAE G +NM+GGCCGSTP HI
Sbjct:  323 FYASIRHAKPICVGLNCALGASAMAPFLKRLADCAECFVHVYSNAGLPNAMGGYDDTPQDMARENLMFAENGWVNMIGGCCGSTPPHI 410
[Close]
BLAST of mRNA_H-paniculata_contig15147.3042.1 vs. uniprot
Match: A0A7S3JTL8_9STRA (Methionine synthase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JTL8_9STRA)

HSP 1 Score: 160 bits (406), Expect = 6.090e-44
Identity = 69/88 (78.41%), Postives = 78/88 (88.64%), Query Frame = 1 
Query:    1 FYVSMRHCKPFCLGLNCALGATQMRPFLQRLAKVAECFVHVYSNAGLPNAMGGYDDTPEDMARDNLLFAEEGLINMLGGCCGSTPAHI 264
            FY S+RH KP C+GLNCALGA+ M PFL+RLA  AECFVHVYSNAGLPNAMGGYDDTP+DMAR+NL+FAE G +NM+GGCCGSTP HI
Sbjct:  323 FYASIRHAKPICVGLNCALGASAMAPFLKRLADCAECFVHVYSNAGLPNAMGGYDDTPQDMARENLMFAENGWVNMIGGCCGSTPPHI 410
[Close]
BLAST of mRNA_H-paniculata_contig15147.3042.1 vs. uniprot
Match: A0A7S3PBM3_9STRA (Methionine synthase (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PBM3_9STRA)

HSP 1 Score: 159 bits (403), Expect = 1.540e-43
Identity = 69/89 (77.53%), Postives = 78/89 (87.64%), Query Frame = 1 
Query:    1 FYVSMRHCKPFCLGLNCALGATQMRPFLQRLAKVAECFVHVYSNAGLPNAMGGYDDTPEDMARDNLLFAEEGLINMLGGCCGSTPAHIK 267
            FYVS+RH KP C+GLNCALGA  M PF++RL+K AECFVHVYSNAGLPNAMGGYDDTPEDMAR+N +F E G +NM+GGCCGSTP HIK
Sbjct:  701 FYVSIRHAKPMCVGLNCALGAKHMVPFVERLSKAAECFVHVYSNAGLPNAMGGYDDTPEDMARENKVFFENGWLNMVGGCCGSTPPHIK 789
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15147.3042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUD9_9PHAE3.270e-5595.51Methionine synthase n=1 Tax=Ectocarpus sp. CCAP 13... [more]
D7FUT0_ECTSI7.270e-5596.63Methionine synthase n=1 Tax=Ectocarpus siliculosus... [more]
A0A7S2XWE9_9STRA1.320e-4985.39Methionine synthase n=1 Tax=Fibrocapsa japonica Ta... [more]
A0A836CPG7_9STRA4.820e-4783.15Methionine synthase n=1 Tax=Tribonema minus TaxID=... [more]
A0A7S1UDH7_9STRA1.660e-4682.95Methionine synthase n=1 Tax=Phaeomonas parva TaxID... [more]
A0A097PA47_9STRA1.460e-4580.90Methionine synthase n=3 Tax=Monodopsidaceae TaxID=... [more]
A0A7S4DBJ3_HETAK2.730e-4580.68Methionine synthase n=1 Tax=Heterosigma akashiwo T... [more]
A0A7S3JQY4_9STRA4.440e-4478.41Methionine synthase (Fragment) n=1 Tax=Aureoumbra ... [more]
A0A7S3JTL8_9STRA6.090e-4478.41Methionine synthase n=1 Tax=Aureoumbra lagunensis ... [more]
A0A7S3PBM3_9STRA1.540e-4377.53Methionine synthase (Fragment) n=1 Tax=Amphora cof... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15147contigH-paniculata_contig15147:5987..6253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.1
Seed ortholog evalue2.7e-44
Seed eggNOG ortholog2880.D7FUT0
Preferred namemetH
KEGG rclassRC00035,RC00113,RC01241
KEGG koko:K00548
KEGG ReactionR00946,R09365
KEGG Pathwayko00270,ko00450,ko00670,ko01100,ko01110,ko01230,map00270,map00450,map00670,map01100,map01110,map01230
KEGG ModuleM00017
Hectar predicted targeting categoryother localisation
EggNOG free text desc.betaine-homocysteine S-methyltransferase activity
EggNOG OGsCOG0646@1,KOG1579@2759
EC2.1.1.13
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size267
Cds size255
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929214.205607-UTR-H-paniculata_contig15147:5986..59981622929214.205607-UTR-H-paniculata_contig15147:5986..5998Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15147 5987..5998 +
1691480773.1839278-UTR-H-paniculata_contig15147:5986..59981691480773.1839278-UTR-H-paniculata_contig15147:5986..5998Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15147 5987..5998 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929214.2190616-CDS-H-paniculata_contig15147:5998..62531622929214.2190616-CDS-H-paniculata_contig15147:5998..6253Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15147 5999..6253 +
1691480773.1942103-CDS-H-paniculata_contig15147:5998..62531691480773.1942103-CDS-H-paniculata_contig15147:5998..6253Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15147 5999..6253 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15147.3042.1prot_H-paniculata_contig15147.3042.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15147 5999..6253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15147.3042.1

>prot_H-paniculata_contig15147.3042.1 ID=prot_H-paniculata_contig15147.3042.1|Name=mRNA_H-paniculata_contig15147.3042.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp
MRHCKPFCLGLNCALGATQMRPFLQRLAKVAECFVHVYSNAGLPNAMGGY
DDTPEDMARDNLLFAEEGLINMLGGCCGSTPAHIK
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mRNA from alignment at H-paniculata_contig15147:5987..6253+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15147.3042.1 ID=mRNA_H-paniculata_contig15147.3042.1|Name=mRNA_H-paniculata_contig15147.3042.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=267bp|location=Sequence derived from alignment at H-paniculata_contig15147:5987..6253+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTTACGTGTCGATGCGGCACTGCAAGCCGTTCTGCCTGGGACTGAACTG
CGCGTTGGGCGCCACTCAGATGCGTCCGTTCCTGCAGCGTTTGGCCAAGG
TGGCCGAGTGCTTCGTCCACGTTTACTCCAATGCCGGACTGCCGAATGCC
ATGGGAGGCTACGACGACACCCCTGAAGATATGGCTCGGGACAACTTATT
ATTTGCGGAGGAAGGCCTGATAAACATGCTGGGGGGGTGCTGCGGGTCTA
CTCCAGCTCATATCAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig15147:5987..6253+

>mRNA_H-paniculata_contig15147.3042.1 ID=mRNA_H-paniculata_contig15147.3042.1|Name=mRNA_H-paniculata_contig15147.3042.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig15147:5987..6253+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGCACTGCAAGCCGTTCTGCCTGGGACTGAACTGCGCGTTGGGCGC
CACTCAGATGCGTCCGTTCCTGCAGCGTTTGGCCAAGGTGGCCGAGTGCT
TCGTCCACGTTTACTCCAATGCCGGACTGCCGAATGCCATGGGAGGCTAC
GACGACACCCCTGAAGATATGGCTCGGGACAACTTATTATTTGCGGAGGA
AGGCCTGATAAACATGCTGGGGGGGTGCTGCGGGTCTACTCCAGCTCATA
TCAAGATGCGGCACTGCAAGCCGTTCTGCCTGGGACTGAACTGCGCGTTG
GGCGCCACTCAGATGCGTCCGTTCCTGCAGCGTTTGGCCAAGGTGGCCGA
GTGCTTCGTCCACGTTTACTCCAATGCCGGACTGCCGAATGCCATGGGAG
GCTACGACGACACCCCTGAAGATATGGCTCGGGACAACTTATTATTTGCG
GAGGAAGGCCTGATAAACATGCTGGGGGGGTGCTGCGGGTCTACTCCAGC
TCATATCAAG
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