mRNA_H-paniculata_contig15132.3037.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15132.3037.1
Unique NamemRNA_H-paniculata_contig15132.3037.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15132.3037.1 vs. uniprot
Match: D7FI32_ECTSI (T-complex protein 1 subunit epsilon n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI32_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 1.610e-22
Identity = 49/53 (92.45%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 QSNILAARSVSNILRSSLGPKGMDKMMVSPDGDVTITNDGATILDKMQVEHQV 159
            ++NILAARSVSNILRSSLGPKGMDKM+VSPDGDVTI+NDGATILDKMQVEHQV
Sbjct:   31 KTNILAARSVSNILRSSLGPKGMDKMLVSPDGDVTISNDGATILDKMQVEHQV 83
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BLAST of mRNA_H-paniculata_contig15132.3037.1 vs. uniprot
Match: A0A7S0SVM0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SVM0_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.150e-21
Identity = 45/53 (84.91%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    1 QSNILAARSVSNILRSSLGPKGMDKMMVSPDGDVTITNDGATILDKMQVEHQV 159
            +SNI+AARSVSN+LR+SLGPKGMDKM+VS DGDVTITNDGATIL KM+VEHQV
Sbjct:   31 KSNIMAARSVSNLLRTSLGPKGMDKMLVSSDGDVTITNDGATILQKMEVEHQV 83
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BLAST of mRNA_H-paniculata_contig15132.3037.1 vs. uniprot
Match: F0YIY6_AURAN (T-complex protein 1 subunit epsilon n=3 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIY6_AURAN)

HSP 1 Score: 95.5 bits (236), Expect = 1.160e-21
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:    7 NILAARSVSNILRSSLGPKGMDKMMVSPDGDVTITNDGATILDKMQVEHQV 159
            NI+AARSVSNILR+SLGPKGMDKMMVSPDGD+TITNDGATILDKM VEHQV
Sbjct:  141 NIMAARSVSNILRTSLGPKGMDKMMVSPDGDITITNDGATILDKMAVEHQV 191
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BLAST of mRNA_H-paniculata_contig15132.3037.1 vs. uniprot
Match: A0A8J2SYN6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SYN6_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.890e-21
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:    7 NILAARSVSNILRSSLGPKGMDKMMVSPDGDVTITNDGATILDKMQVEHQV 159
            NI+AARSVS +LR+SLGPKGMDKMMVSPDGDVTITNDGATILDKM VEHQV
Sbjct:   33 NIMAARSVSGLLRTSLGPKGMDKMMVSPDGDVTITNDGATILDKMAVEHQV 83
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BLAST of mRNA_H-paniculata_contig15132.3037.1 vs. uniprot
Match: A0A6U3ULQ3_9STRA (T-complex protein 1 subunit epsilon n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3ULQ3_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 2.030e-21
Identity = 46/53 (86.79%), Postives = 52/53 (98.11%), Query Frame = 1 
Query:    1 QSNILAARSVSNILRSSLGPKGMDKMMVSPDGDVTITNDGATILDKMQVEHQV 159
            +SNILAARS+SNILR+SLGPKGMDKM+VSPDGDVTITNDGATILD+M V+HQV
Sbjct:   31 KSNILAARSISNILRTSLGPKGMDKMLVSPDGDVTITNDGATILDRMHVDHQV 83
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BLAST of mRNA_H-paniculata_contig15132.3037.1 vs. uniprot
Match: A0A7S2SPL3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPL3_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 4.160e-21
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:    1 QSNILAARSVSNILRSSLGPKGMDKMMVSPDGDVTITNDGATILDKMQVEHQV 159
            +SNILAARSVSNILR+SLGPKGMDKM+V  DG VTITNDGATIL KM+VEHQV
Sbjct:   60 KSNILAARSVSNILRTSLGPKGMDKMLVDQDGGVTITNDGATILQKMEVEHQV 112
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BLAST of mRNA_H-paniculata_contig15132.3037.1 vs. uniprot
Match: A0A7S4E7P5_9STRA (T-complex protein 1 subunit epsilon n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E7P5_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 9.720e-21
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:    7 NILAARSVSNILRSSLGPKGMDKMMVSPDGDVTITNDGATILDKMQVEHQV 159
            NI+AARSVS +LR+SLGPKGMDKMMVSPDGDVTITNDGATILDKM VEHQV
Sbjct:   33 NIMAARSVSGLLRTSLGPKGMDKMMVSPDGDVTITNDGATILDKMAVEHQV 83
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BLAST of mRNA_H-paniculata_contig15132.3037.1 vs. uniprot
Match: UPI00077ABE4A (T-complex protein 1 subunit epsilon-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077ABE4A)

HSP 1 Score: 92.0 bits (227), Expect = 1.150e-20
Identity = 44/53 (83.02%), Postives = 52/53 (98.11%), Query Frame = 1 
Query:    1 QSNILAARSVSNILRSSLGPKGMDKMMVSPDGDVTITNDGATILDKMQVEHQV 159
            +S++LAA++V+NILR+SLGPKGMDKMMVSPDGDVT+TNDGATILD MQVEHQV
Sbjct:   41 KSHVLAAKAVANILRTSLGPKGMDKMMVSPDGDVTVTNDGATILDMMQVEHQV 93
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BLAST of mRNA_H-paniculata_contig15132.3037.1 vs. uniprot
Match: A0A7S0K8S7_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0K8S7_CAFRO)

HSP 1 Score: 85.9 bits (211), Expect = 1.630e-20
Identity = 40/53 (75.47%), Postives = 52/53 (98.11%), Query Frame = 1 
Query:    1 QSNILAARSVSNILRSSLGPKGMDKMMVSPDGDVTITNDGATILDKMQVEHQV 159
            ++NI+AAR+V++ILR+SLGP+GMDKMMVSPDG+VTITNDGATIL ++QVEH+V
Sbjct:   40 KANIMAARTVTSILRTSLGPRGMDKMMVSPDGEVTITNDGATILQRLQVEHEV 92
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BLAST of mRNA_H-paniculata_contig15132.3037.1 vs. uniprot
Match: A0A2R5G3Y2_9STRA (T-complex protein 1 subunit epsilon n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G3Y2_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.810e-20
Identity = 45/53 (84.91%), Postives = 52/53 (98.11%), Query Frame = 1 
Query:    1 QSNILAARSVSNILRSSLGPKGMDKMMVSPDGDVTITNDGATILDKMQVEHQV 159
            ++NILAAR+V+ +LRSSLGPKGMDKMMVSPDGDVTITNDGATIL+KM+VEHQV
Sbjct:   31 KANILAARTVAGLLRSSLGPKGMDKMMVSPDGDVTITNDGATILNKMEVEHQV 83
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15132.3037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI32_ECTSI1.610e-2292.45T-complex protein 1 subunit epsilon n=2 Tax=Ectoca... [more]
A0A7S0SVM0_9STRA1.150e-2184.91Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
F0YIY6_AURAN1.160e-2192.16T-complex protein 1 subunit epsilon n=3 Tax=Aureoc... [more]
A0A8J2SYN6_9STRA1.890e-2190.20Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6U3ULQ3_9STRA2.030e-2186.79T-complex protein 1 subunit epsilon n=1 Tax=Ditylu... [more]
A0A7S2SPL3_9STRA4.160e-2184.91Hypothetical protein (Fragment) n=2 Tax=Rhizochrom... [more]
A0A7S4E7P5_9STRA9.720e-2190.20T-complex protein 1 subunit epsilon n=3 Tax=Pelago... [more]
UPI00077ABE4A1.150e-2083.02T-complex protein 1 subunit epsilon-like n=1 Tax=A... [more]
A0A7S0K8S7_CAFRO1.630e-2075.47Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A2R5G3Y2_9STRA1.810e-2084.91T-complex protein 1 subunit epsilon n=1 Tax=Hondae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15132contigH-paniculata_contig15132:123..281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue4.2e-19
Seed eggNOG ortholog2880.D7FI32
Preferred nameCCT5
KEGG koko:K09497
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005832,GO:0005886,GO:0005911,GO:0006457,GO:0006458,GO:0008150,GO:0009506,GO:0009987,GO:0016020,GO:0030054,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0055044,GO:0061077,GO:0071944,GO:0101031
EggNOG free text desc.unfolded protein binding
EggNOG OGsCOG0459@1,KOG0357@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko03110,ko04147
Exons1
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929213.5053356-CDS-H-paniculata_contig15132:122..2811622929213.5053356-CDS-H-paniculata_contig15132:122..281Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15132 123..281 +
1691480772.8207595-CDS-H-paniculata_contig15132:122..2811691480772.8207595-CDS-H-paniculata_contig15132:122..281Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15132 123..281 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15132.3037.1prot_H-paniculata_contig15132.3037.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15132 123..281 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15132.3037.1

>prot_H-paniculata_contig15132.3037.1 ID=prot_H-paniculata_contig15132.3037.1|Name=mRNA_H-paniculata_contig15132.3037.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
QSNILAARSVSNILRSSLGPKGMDKMMVSPDGDVTITNDGATILDKMQVE
HQV
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mRNA from alignment at H-paniculata_contig15132:123..281+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15132.3037.1 ID=mRNA_H-paniculata_contig15132.3037.1|Name=mRNA_H-paniculata_contig15132.3037.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig15132:123..281+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTCAAATATCCTGGCCGCCCGGAGCGTTAGTAACATCCTGCGATCTTC
GTTGGGCCCCAAGGGCATGGACAAGATGATGGTTAGTCCGGACGGTGATG
TGACCATCACGAACGACGGGGCGACCATCCTGGACAAGATGCAAGTGGAG
CACCAGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig15132:123..281+

>mRNA_H-paniculata_contig15132.3037.1 ID=mRNA_H-paniculata_contig15132.3037.1|Name=mRNA_H-paniculata_contig15132.3037.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig15132:123..281+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTCAAATATCCTGGCCGCCCGGAGCGTTAGTAACATCCTGCGATCTTC
GTTGGGCCCCAAGGGCATGGACAAGATGATGGTTAGTCCGGACGGTGATG
TGACCATCACGAACGACGGGGCGACCATCCTGGACAAGATGCAAGTGGAG
CACCAGGTGCAGTCAAATATCCTGGCCGCCCGGAGCGTTAGTAACATCCT
GCGATCTTCGTTGGGCCCCAAGGGCATGGACAAGATGATGGTTAGTCCGG
ACGGTGATGTGACCATCACGAACGACGGGGCGACCATCCTGGACAAGATG
CAAGTGGAGCACCAGGTG
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