mRNA_H-paniculata_contig15130.3036.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15130.3036.1
Unique NamemRNA_H-paniculata_contig15130.3036.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig15130.3036.1 vs. uniprot
Match: D7G2L3_ECTSI (RNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2L3_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 2.680e-44
Identity = 76/82 (92.68%), Postives = 80/82 (97.56%), Query Frame = 1
Query:    1 NALRWGVDVVVGTPGRLLDHVGKGTLQLSEAEFIILDEADQMLDMGFKEEMEKVFTACGEPGERGRQMLLFSATMPPWVDKV 246
            +ALRWGVDVVVGTPGRLLDHVG+GTLQLS+AEFIILDEADQMLDMGFKEEMEKVF ACGE GE+GRQMLLFSATMPPWVDKV
Sbjct:  265 DALRWGVDVVVGTPGRLLDHVGRGTLQLSDAEFIILDEADQMLDMGFKEEMEKVFEACGEEGEQGRQMLLFSATMPPWVDKV 346          
BLAST of mRNA_H-paniculata_contig15130.3036.1 vs. uniprot
Match: K8YSG2_NANGC (RNA helicase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YSG2_NANGC)

HSP 1 Score: 113 bits (282), Expect = 2.490e-27
Identity = 53/82 (64.63%), Postives = 66/82 (80.49%), Query Frame = 1
Query:    1 NALRWGVDVVVGTPGRLLDHVGKGTLQLSEAEFIILDEADQMLDMGFKEEMEKVFTACGEPGERGRQMLLFSATMPPWVDKV 246
             ALR GV VVVGTPGR+LDH+ +GTL+LS   F+ILDEAD MLDMGFK++++KV  A G+   + RQ+LLFSAT+PPWV KV
Sbjct:  258 EALRRGVQVVVGTPGRILDHIERGTLKLSGLRFLILDEADSMLDMGFKDDIQKVCDAMGQDSHQRRQVLLFSATLPPWVQKV 339          
BLAST of mRNA_H-paniculata_contig15130.3036.1 vs. uniprot
Match: A0A8J2SD65_9STRA (RNA helicase n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SD65_9STRA)

HSP 1 Score: 109 bits (273), Expect = 4.010e-26
Identity = 53/82 (64.63%), Postives = 67/82 (81.71%), Query Frame = 1
Query:    1 NALRWGVDVVVGTPGRLLDHVGKGTLQLSEAEFIILDEADQMLDMGFKEEMEKVFTACGEPGERGRQMLLFSATMPPWVDKV 246
            +ALR GVDVVVGTPGR +D + K  LQLS+ +F +LDEADQMLDMGFK+E+EK+F A G+  +R  Q+LLFSAT+PPWV K+
Sbjct:  217 DALRRGVDVVVGTPGRTMDLIEKQVLQLSQLKFAVLDEADQMLDMGFKDELEKIFAAMGKTVDR--QLLLFSATLPPWVKKI 296          
BLAST of mRNA_H-paniculata_contig15130.3036.1 vs. uniprot
Match: A0A2T9Y7Q7_9FUNG (RNA helicase n=1 Tax=Furculomyces boomerangus TaxID=61424 RepID=A0A2T9Y7Q7_9FUNG)

HSP 1 Score: 108 bits (270), Expect = 1.080e-25
Identity = 52/83 (62.65%), Postives = 65/83 (78.31%), Query Frame = 1
Query:    1 NALRWGVDVVVGTPGRLLDHVGKGTLQLSEAEFIILDEADQMLDMGFKEEMEKVFTACGEPGERGR-QMLLFSATMPPWVDKV 246
            N+LR G+D+VVGTPGR+LDH+ +GTL L   EF+ LDEADQMLD+GFKE+ME+V    GE    G+ Q+LLFSAT+P WV KV
Sbjct: 1665 NSLRKGLDIVVGTPGRILDHLSRGTLSLKSTEFVCLDEADQMLDIGFKEDMEQVLKTLGEHRPSGKKQILLFSATIPTWVAKV 1747          
BLAST of mRNA_H-paniculata_contig15130.3036.1 vs. uniprot
Match: A0A836CJP1_9STRA (RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJP1_9STRA)

HSP 1 Score: 107 bits (266), Expect = 3.590e-25
Identity = 55/86 (63.95%), Postives = 65/86 (75.58%), Query Frame = 1
Query:    1 NALRWGVDVVVGTPGRLLDHVGKGTLQLSEAEFIILDEADQMLDMGFKEEMEKVFTAC-GEPGERGR---QMLLFSATMPPWVDKV 246
             ALR GVD+VVGTPGR++D + +GTL+L + ++ ILDEADQMLDMGFKEEMEKVF  C GE     R   Q LLFSATMP WV +V
Sbjct:  258 EALRRGVDIVVGTPGRIIDMMDRGTLKLDQTDYFILDEADQMLDMGFKEEMEKVFAQCRGEADGAERREVQTLLFSATMPEWVQRV 343          
BLAST of mRNA_H-paniculata_contig15130.3036.1 vs. uniprot
Match: F0Y727_AURAN (RNA helicase (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y727_AURAN)

HSP 1 Score: 106 bits (264), Expect = 6.120e-25
Identity = 52/84 (61.90%), Postives = 62/84 (73.81%), Query Frame = 1
Query:    1 NALRWGVDVVVGTPGRLLDHVGKGTLQLSEAEFIILDEADQMLDMGFKEEMEKVFTACGEPGE--RGRQMLLFSATMPPWVDKV 246
            +ALR GVDVVVGTPGR +D + KG L  S   F +LDEADQMLDMGFK+E+EK+F A    G   R RQ+LLFSAT+PPWV  +
Sbjct:  116 DALRRGVDVVVGTPGRTMDLIEKGVLDASALSFAVLDEADQMLDMGFKDELEKIFAAMAPAGAPARARQLLLFSATLPPWVRNI 199          
BLAST of mRNA_H-paniculata_contig15130.3036.1 vs. uniprot
Match: A0A2T9Y8X1_9FUNG (RNA helicase n=1 Tax=Smittium simulii TaxID=133385 RepID=A0A2T9Y8X1_9FUNG)

HSP 1 Score: 104 bits (260), Expect = 2.350e-24
Identity = 49/83 (59.04%), Postives = 66/83 (79.52%), Query Frame = 1
Query:    1 NALRWGVDVVVGTPGRLLDHVGKGTLQLSEAEFIILDEADQMLDMGFKEEMEKVFTACGEPGERGR-QMLLFSATMPPWVDKV 246
            N+LR G+D++VGTPGRLLDH+ +G+L L+  EF+ LDEADQMLD+GFKE+ME+   A  E  + G+ Q+LLFSAT+P WV+ V
Sbjct:  233 NSLRRGLDILVGTPGRLLDHLNRGSLSLAATEFVCLDEADQMLDIGFKEDMEQTLKALKEQSKSGKFQVLLFSATVPEWVNNV 315          
BLAST of mRNA_H-paniculata_contig15130.3036.1 vs. uniprot
Match: A0A7S2KT23_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KT23_9STRA)

HSP 1 Score: 101 bits (252), Expect = 3.840e-24
Identity = 44/82 (53.66%), Postives = 61/82 (74.39%), Query Frame = 1
Query:    1 NALRWGVDVVVGTPGRLLDHVGKGTLQLSEAEFIILDEADQMLDMGFKEEMEKVFTACGEPGERGRQMLLFSATMPPWVDKV 246
             ALR GVDVVVGTPGR++DH+ +G L L+E   ++LDEAD+ML+MGF E++E +    G+  ++  Q LLFSAT PPWV ++
Sbjct:  159 RALRQGVDVVVGTPGRIMDHLDRGNLNLAECNVVVLDEADEMLNMGFAEDVEVILEGAGDENDKKMQCLLFSATTPPWVKQI 240          
BLAST of mRNA_H-paniculata_contig15130.3036.1 vs. uniprot
Match: T0YIA1_9ZZZZ (DEAD/DEAH box helicase domain protein (Fragment) n=1 Tax=mine drainage metagenome TaxID=410659 RepID=T0YIA1_9ZZZZ)

HSP 1 Score: 97.4 bits (241), Expect = 5.860e-24
Identity = 48/82 (58.54%), Postives = 63/82 (76.83%), Query Frame = 1
Query:    1 NALRWGVDVVVGTPGRLLDHVGKGTLQLSEAEFIILDEADQMLDMGFKEEMEKVFTACGEPGERGRQMLLFSATMPPWVDKV 246
             ALR GV +V+GTPGRLLDH+G+GTL LS    ++LDEAD+MLDMGF E++EK+F A   P ER  Q +LFSAT PP ++++
Sbjct:   72 RALRMGVPIVIGTPGRLLDHLGRGTLDLSRLRTLVLDEADEMLDMGFIEDIEKLFAAA--PPER--QTMLFSATFPPEIERL 149          
BLAST of mRNA_H-paniculata_contig15130.3036.1 vs. uniprot
Match: A0A7S1B3X5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B3X5_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.080e-23
Identity = 48/82 (58.54%), Postives = 61/82 (74.39%), Query Frame = 1
Query:    1 NALRWGVDVVVGTPGRLLDHVGKGTLQLSEAEFIILDEADQMLDMGFKEEMEKVFTACGEPGERGRQMLLFSATMPPWVDKV 246
             ALR G DVVVGTPGRL+DH+ +G L LS+ +  ILDEAD+ML+MGF EE+E+V    GE  E   Q+L+FSAT PPWV ++
Sbjct:  230 RALRRGTDVVVGTPGRLIDHIERGNLDLSKVQTAILDEADEMLNMGFAEEVERVLEGAGEALEDKTQVLMFSATTPPWVTEI 311          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15130.3036.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2L3_ECTSI2.680e-4492.68RNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
K8YSG2_NANGC2.490e-2764.63RNA helicase n=3 Tax=Monodopsidaceae TaxID=425072 ... [more]
A0A8J2SD65_9STRA4.010e-2664.63RNA helicase n=2 Tax=Pelagomonas calceolata TaxID=... [more]
A0A2T9Y7Q7_9FUNG1.080e-2562.65RNA helicase n=1 Tax=Furculomyces boomerangus TaxI... [more]
A0A836CJP1_9STRA3.590e-2563.95RNA helicase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
F0Y727_AURAN6.120e-2561.90RNA helicase (Fragment) n=1 Tax=Aureococcus anopha... [more]
A0A2T9Y8X1_9FUNG2.350e-2459.04RNA helicase n=1 Tax=Smittium simulii TaxID=133385... [more]
A0A7S2KT23_9STRA3.840e-2453.66Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
T0YIA1_9ZZZZ5.860e-2458.54DEAD/DEAH box helicase domain protein (Fragment) n... [more]
A0A7S1B3X5_9STRA2.080e-2358.54Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15130contigH-paniculata_contig15130:1012..2164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.9
Seed ortholog evalue6.3e-38
Seed eggNOG ortholog2880.D7G2L3
Preferred nameDDX21
KEGG koko:K13183,ko:K16911
KEGG Pathwayko01110,map01110
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003725,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005886,GO:0006139,GO:0006351,GO:0006366,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009615,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010501,GO:0010604,GO:0010628,GO:0014070,GO:0016020,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017069,GO:0017111,GO:0018130,GO:0019222,GO:0019438,GO:0019843,GO:0030515,GO:0031974,GO:0031981,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0035198,GO:0040029,GO:0042221,GO:0042623,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043330,GO:0043331,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045815,GO:0046483,GO:0048518,GO:0050789,GO:0050896,GO:0051704,GO:0051707,GO:0060255,GO:0061980,GO:0065007,GO:0070013,GO:0070035,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:0097322,GO:0097659,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901698
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0331@2759
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-11_002660.1
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03036,ko03041
Exons2
Model size249
Cds size249
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929213.4406304-CDS-H-paniculata_contig15130:1011..11011622929213.4406304-CDS-H-paniculata_contig15130:1011..1101Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15130 1012..1101 -
1691480772.7873433-CDS-H-paniculata_contig15130:1011..11011691480772.7873433-CDS-H-paniculata_contig15130:1011..1101Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15130 1012..1101 -
1622929213.464423-CDS-H-paniculata_contig15130:2005..21641622929213.464423-CDS-H-paniculata_contig15130:2005..2164Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15130 2006..2164 -
1691480772.8024385-CDS-H-paniculata_contig15130:2005..21641691480772.8024385-CDS-H-paniculata_contig15130:2005..2164Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15130 2006..2164 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15130.3036.1prot_H-paniculata_contig15130.3036.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15130 1012..2164 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15130.3036.1

>prot_H-paniculata_contig15130.3036.1 ID=prot_H-paniculata_contig15130.3036.1|Name=mRNA_H-paniculata_contig15130.3036.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
NALRWGVDVVVGTPGRLLDHVGKGTLQLSEAEFIILDEADQMLDMGFKEE
MEKVFTACGEPGERGRQMLLFSATMPPWVDKV*
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mRNA from alignment at H-paniculata_contig15130:1012..2164-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15130.3036.1 ID=mRNA_H-paniculata_contig15130.3036.1|Name=mRNA_H-paniculata_contig15130.3036.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1153bp|location=Sequence derived from alignment at H-paniculata_contig15130:1012..2164- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGCTCTGAGGTGGGGTGTGGACGTCGTAGTCGGCACCCCTGGTAGACT GTTGGATCACGTGGGCAAGGGCACCTTGCAGCTGTCGGAGGCAGAGTTTA TCATCCTCGACGAGGCCGACCAGATGCTTGACATGGGCTTCAAGGAGGAG ATGGAGAAGGTATGTATCTGTAGAGTGCATGGCTCTATTTAGAGTAGTAC TGCATGTTTTCTGCTTTGCTTTGAATCCTGAGTGGCGAATACTGTATGAC CCGGAGGTATCATGGTTGATATATCGTTATTATACCGAGGTGCGAACGTG TTTTTTTCAAACGCGAGTATTGTGACTGTTTATCTCGAGAACGAAGACAG ACAGACAGACAAACAGACAAGCAGACAGACAGATCTTAGGCGGTCGGACG AACCTATTAGTTAATCAATCGATAGATTTATGTCTGCAAGATGAAACTTC ATGTTTCCAACGGCACACGCTTCCTTTTCGCTGTCCGTAAAGTTCATGTA TTATTGTAACAGCGCTAAATACATGTTCTCGAGAATGTAAAAAATCGCGT TTTGAACCGCGCCTGCACACCTACCGCGGTTTGGATACTTGCAGGTTTTT ACGGTAGCTGCAGGTAGGCCACGGCTATTTTAGTATAGGCAGGCCTATTT GCGCCGCGAACGGAGGGGCTATTATGTGCATATTATGCGTTAATTGTCTA TGTTAACGTTTGAAGTGCTCATACCTTCAAAATATGAGTTCTGGGACCTG CGTTTTGGGCATTTTTTTTGCTCGCCAAGAGCCATTTCTCGTCCTGAAAA TGGCAGTTAGAGGCGAGTGTACAGGCGAGGGCTCTCTCTCTCTCTCTCTC TCTCTCTCTGTTTCTTTCTCTGCCACTCTGTCACTCTTTCTGTCTCTTCC TGTCTCTTTCTGTCTCTTTCTGTCTCTTTCTGTCTCTTTCTGTCTCTTTC TGTCTCTTTCTGTCTCTTTCTGTCTCTTTCTGTCTCTTTCTGTCTCTTTC TGTCTCTTTCTGTCTCTTTCTGTCGCTTGACCCCCCACCCCTTTTTTGTC GCGGAATTATCAGGTGTTTACGGCCTGTGGAGAGCCGGGAGAACGGGGAC GCCAAATGTTGCTCTTCAGTGCGACTATGCCACCTTGGGTTGACAAGGTT TGA
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Coding sequence (CDS) from alignment at H-paniculata_contig15130:1012..2164-

>mRNA_H-paniculata_contig15130.3036.1 ID=mRNA_H-paniculata_contig15130.3036.1|Name=mRNA_H-paniculata_contig15130.3036.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig15130:1012..2164- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGCTCTGAGGTGGGGTGTGGACGTCGTAGTCGGCACCCCTGGTAGACT
GTTGGATCACGTGGGCAAGGGCACCTTGCAGCTGTCGGAGGCAGAGTTTA
TCATCCTCGACGAGGCCGACCAGATGCTTGACATGGGCTTCAAGGAGGAG
ATGGAGAAGAACGCTCTGAGGTGGGGTGTGGACGTCGTAGTCGGCACCCC
TGGTAGACTGTTGGATCACGTGGGCAAGGGCACCTTGCAGCTGTCGGAGG
CAGAGTTTATCATCCTCGACGAGGCCGACCAGATGCTTGACATGGGCTTC
AAGGAGGAGATGGAGAAGGTGTTTACGGCCTGTGGAGAGCCGGGAGAACG
GGGACGCCAAATGTTGCTCTTCAGTGCGACTATGCCACCTTGGGTTGACA
AGGTTTGAGTGTTTACGGCCTGTGGAGAGCCGGGAGAACGGGGACGCCAA
ATGTTGCTCTTCAGTGCGACTATGCCACCTTGGGTTGACAAGGTTTGA
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