mRNA_H-paniculata_contig15129.3033.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig15129.3033.1 vs. uniprot
Match: A0A6H5K466_9PHAE (Adaptin_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K466_9PHAE) HSP 1 Score: 219 bits (557), Expect = 1.080e-66 Identity = 119/124 (95.97%), Postives = 121/124 (97.58%), Query Frame = 1 Query: 1 VCRRDPSQKSRFVRVLLSMLQSPSAAVSYEAAWTLVSLSGAPTAIRAAAQTYAQLLNTQSDNNVKLIVLERLAALKKHHAKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVSPRNIEEVVQV 372 VCRRDPSQKSRFVRVLLSMLQS SAAVSYEAAWTLVSLSGAPTAIRAAA TYAQL+NTQSDNNVKLIVLERLAALKKHH KVLQEVLMDILRALSSPNVDICRKTLEVAMDLV+PRNIEEVVQV Sbjct: 234 VCRRDPSQKSRFVRVLLSMLQSRSAAVSYEAAWTLVSLSGAPTAIRAAATTYAQLVNTQSDNNVKLIVLERLAALKKHHTKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVTPRNIEEVVQV 357
BLAST of mRNA_H-paniculata_contig15129.3033.1 vs. uniprot
Match: D7G7C5_ECTSI (Coatomer subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7C5_ECTSI) HSP 1 Score: 218 bits (556), Expect = 6.280e-64 Identity = 119/124 (95.97%), Postives = 120/124 (96.77%), Query Frame = 1 Query: 1 VCRRDPSQKSRFVRVLLSMLQSPSAAVSYEAAWTLVSLSGAPTAIRAAAQTYAQLLNTQSDNNVKLIVLERLAALKKHHAKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVSPRNIEEVVQV 372 VCRRDPSQKSRFVRVLLSMLQS SAAVSYEAAWTLVSLSGAPTAIRAAA TYAQLLNTQSDNNVKLIVLERLA LKKHH KVLQEVLMDILRALSSPNVDICRKTLEVAMDLV+PRNIEEVVQV Sbjct: 234 VCRRDPSQKSRFVRVLLSMLQSRSAAVSYEAAWTLVSLSGAPTAIRAAATTYAQLLNTQSDNNVKLIVLERLAGLKKHHTKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVTPRNIEEVVQV 357
BLAST of mRNA_H-paniculata_contig15129.3033.1 vs. uniprot
Match: A0A835Z7E2_9STRA (Coatomer subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7E2_9STRA) HSP 1 Score: 201 bits (512), Expect = 7.920e-58 Identity = 109/123 (88.62%), Postives = 114/123 (92.68%), Query Frame = 1 Query: 1 VCRRDPSQKSRFVRVLLSMLQSPSAAVSYEAAWTLVSLSGAPTAIRAAAQTYAQLLNTQSDNNVKLIVLERLAALKKHHAKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVSPRNIEEVVQ 369 VCRRDP+QK RFVR+LL MLQS SAAV YEAAWTLVSLS APTAIRAAA TYAQLLN+QSDNNVKLIVLERL ALK+ HAKVLQEVLMDILRALSSPN+DICRKTL VAMDLVSPRNIEEVVQ Sbjct: 239 VCRRDPAQKGRFVRLLLGMLQSDSAAVCYEAAWTLVSLSSAPTAIRAAAATYAQLLNSQSDNNVKLIVLERLDALKRQHAKVLQEVLMDILRALSSPNIDICRKTLTVAMDLVSPRNIEEVVQ 361
BLAST of mRNA_H-paniculata_contig15129.3033.1 vs. uniprot
Match: W7TX10_9STRA (Coatomer subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TX10_9STRA) HSP 1 Score: 190 bits (483), Expect = 8.360e-54 Identity = 101/124 (81.45%), Postives = 114/124 (91.94%), Query Frame = 1 Query: 1 VCRRDPSQKSRFVRVLLSMLQSPSAAVSYEAAWTLVSLSGAPTAIRAAAQTYAQLLNTQSDNNVKLIVLERLAALKKHHAKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVSPRNIEEVVQV 372 VCR+DP+QK+RFVR L ++LQS SAAVSYEAAWTLVSLS APTA+RAAA TYAQLLN+QSD+NVKLIVLERLA+LK+ H +V+QE LMDILRAL SPN+DICRKTLEVAMDLVSPRNIEEVV V Sbjct: 243 VCRKDPAQKARFVRALFNLLQSDSAAVSYEAAWTLVSLSSAPTAVRAAASTYAQLLNSQSDHNVKLIVLERLASLKQGHTRVVQENLMDILRALGSPNLDICRKTLEVAMDLVSPRNIEEVVAV 366
BLAST of mRNA_H-paniculata_contig15129.3033.1 vs. uniprot
Match: F0YGU1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGU1_AURAN) HSP 1 Score: 187 bits (475), Expect = 2.760e-53 Identity = 98/124 (79.03%), Postives = 110/124 (88.71%), Query Frame = 1 Query: 1 VCRRDPSQKSRFVRVLLSMLQSPSAAVSYEAAWTLVSLSGAPTAIRAAAQTYAQLLNTQSDNNVKLIVLERLAALKKHHAKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVSPRNIEEVVQV 372 VCRRDP+QKSRFVR L +L SPSAAVSYEAAWTL SLS APTAIRAAA TY LL TQSDNNVKLIVLERLA LK+ H +VL EVLMD+LRAL+SPNVDIC++TLE+AMDL+SPRNI+EV+QV Sbjct: 58 VCRRDPAQKSRFVRFLFQLLVSPSAAVSYEAAWTLASLSSAPTAIRAAASTYTSLLCTQSDNNVKLIVLERLAELKERHIRVLSEVLMDMLRALASPNVDICKRTLEIAMDLISPRNIDEVIQV 181
BLAST of mRNA_H-paniculata_contig15129.3033.1 vs. uniprot
Match: A0A485LCP1_9STRA (Coatomer subunit beta n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LCP1_9STRA) HSP 1 Score: 189 bits (479), Expect = 2.860e-53 Identity = 98/122 (80.33%), Postives = 112/122 (91.80%), Query Frame = 1 Query: 1 VCRRDPSQKSRFVRVLLSMLQSPSAAVSYEAAWTLVSLSGAPTAIRAAAQTYAQLLNTQSDNNVKLIVLERLAALKKHHAKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVSPRNIEEVV 366 VCR DP+QKSRF+R + +LQS SAAVSYEAAWTLV+LS APTAIRAAA+TYA LLN+QSDNNVKLIVL+RLA LKKHH KVLQEVLMDI+RAL+SPN+DIC+K L++AMDLVSPRNIEEVV Sbjct: 240 VCRVDPTQKSRFIRCIFQLLQSSSAAVSYEAAWTLVTLSSAPTAIRAAAKTYAGLLNSQSDNNVKLIVLDRLADLKKHHTKVLQEVLMDIMRALASPNLDICKKVLDIAMDLVSPRNIEEVV 361
BLAST of mRNA_H-paniculata_contig15129.3033.1 vs. uniprot
Match: A0A067CTT4_SAPPC (Coatomer subunit beta n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CTT4_SAPPC) HSP 1 Score: 187 bits (475), Expect = 1.010e-52 Identity = 95/122 (77.87%), Postives = 111/122 (90.98%), Query Frame = 1 Query: 1 VCRRDPSQKSRFVRVLLSMLQSPSAAVSYEAAWTLVSLSGAPTAIRAAAQTYAQLLNTQSDNNVKLIVLERLAALKKHHAKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVSPRNIEEVV 366 VCR DP+QK+RFVR + +LQS SAAVSYEAAWTLV+LS APTA+RAAA+TYA LLN+QSDNNVKLIVL+RLA LKKHH K+LQEVLMD++RALSSPN+DIC+K LE+AM LVSPRNIEEV+ Sbjct: 238 VCRADPAQKARFVRCIFQLLQSSSAAVSYEAAWTLVTLSSAPTAVRAAAKTYAGLLNSQSDNNVKLIVLDRLADLKKHHTKILQEVLMDVMRALSSPNLDICKKVLEIAMSLVSPRNIEEVI 359
BLAST of mRNA_H-paniculata_contig15129.3033.1 vs. uniprot
Match: A0A024TD70_9STRA (Coatomer subunit beta n=12 Tax=Aphanomyces TaxID=100860 RepID=A0A024TD70_9STRA) HSP 1 Score: 186 bits (472), Expect = 2.570e-52 Identity = 96/122 (78.69%), Postives = 112/122 (91.80%), Query Frame = 1 Query: 1 VCRRDPSQKSRFVRVLLSMLQSPSAAVSYEAAWTLVSLSGAPTAIRAAAQTYAQLLNTQSDNNVKLIVLERLAALKKHHAKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVSPRNIEEVV 366 VCR DP+QK+RF+R + +LQS SAAVSYEAAWTLV+LS APTA+RAAA+TYA LLN+QSDNNVKLIVL+RLA LKKHH KVLQEVLMDILRALSSPN+DIC+K L++AM+LVSPRNI+EVV Sbjct: 239 VCRVDPAQKARFIRCIFQLLQSSSAAVSYEAAWTLVTLSSAPTAVRAAAKTYAGLLNSQSDNNVKLIVLDRLADLKKHHTKVLQEVLMDILRALSSPNLDICKKVLDIAMNLVSPRNIDEVV 360
BLAST of mRNA_H-paniculata_contig15129.3033.1 vs. uniprot
Match: A0A6G0WFC7_9STRA (Coatomer subunit beta n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WFC7_9STRA) HSP 1 Score: 186 bits (471), Expect = 3.610e-52 Identity = 94/122 (77.05%), Postives = 112/122 (91.80%), Query Frame = 1 Query: 1 VCRRDPSQKSRFVRVLLSMLQSPSAAVSYEAAWTLVSLSGAPTAIRAAAQTYAQLLNTQSDNNVKLIVLERLAALKKHHAKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVSPRNIEEVV 366 VCR DPSQK+RF+R + +LQS SAAVSYEAAWTLV+LS APTA+RAAA+TYA LLN+QSDNNVKL+VL+RLA LKKHH KVLQEVLMDI+RALSSPN+DIC+K L++AMDLV+PRNI++VV Sbjct: 238 VCRVDPSQKARFIRCIFQLLQSSSAAVSYEAAWTLVTLSSAPTAVRAAAKTYAGLLNSQSDNNVKLVVLDRLADLKKHHTKVLQEVLMDIMRALSSPNLDICKKVLDIAMDLVTPRNIDDVV 359
BLAST of mRNA_H-paniculata_contig15129.3033.1 vs. uniprot
Match: A0A8K1C4D7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4D7_PYTOL) HSP 1 Score: 184 bits (466), Expect = 1.770e-51 Identity = 95/122 (77.87%), Postives = 109/122 (89.34%), Query Frame = 1 Query: 1 VCRRDPSQKSRFVRVLLSMLQSPSAAVSYEAAWTLVSLSGAPTAIRAAAQTYAQLLNTQSDNNVKLIVLERLAALKKHHAKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVSPRNIEEVV 366 VCR+DPSQKSRFVR + +L S S AVSYEAAWTLV+LS APTA+RAAA+TY LLN+QSDNNVKLIVL+RLA LKKHH KVLQE+LMDI+RALSSP++DIC+K LE+AMDLVS RNIEEVV Sbjct: 254 VCRQDPSQKSRFVRCIFQLLNSSSPAVSYEAAWTLVTLSSAPTAVRAAAKTYCGLLNSQSDNNVKLIVLDRLADLKKHHTKVLQEILMDIMRALSSPSIDICKKVLEIAMDLVSTRNIEEVV 375 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15129.3033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig15129.3033.1 >prot_H-paniculata_contig15129.3033.1 ID=prot_H-paniculata_contig15129.3033.1|Name=mRNA_H-paniculata_contig15129.3033.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp VCRRDPSQKSRFVRVLLSMLQSPSAAVSYEAAWTLVSLSGAPTAIRAAAQback to top mRNA from alignment at H-paniculata_contig15129:390..1510- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig15129.3033.1 ID=mRNA_H-paniculata_contig15129.3033.1|Name=mRNA_H-paniculata_contig15129.3033.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1121bp|location=Sequence derived from alignment at H-paniculata_contig15129:390..1510- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig15129:390..1510- >mRNA_H-paniculata_contig15129.3033.1 ID=mRNA_H-paniculata_contig15129.3033.1|Name=mRNA_H-paniculata_contig15129.3033.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at H-paniculata_contig15129:390..1510- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |