mRNA_H-paniculata_contig15120.3032.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15120.3032.1
Unique NamemRNA_H-paniculata_contig15120.3032.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig15120.3032.1 vs. uniprot
Match: A0A2N9G413_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9G413_FAGSY)

HSP 1 Score: 212 bits (539), Expect = 1.820e-55
Identity = 197/667 (29.54%), Postives = 297/667 (44.53%), Query Frame = 1
Query:    1 IKCRRSDQGGEYTGKPFRQFCAENGIKWEFSAAYTPQQNGVAERSWRNIFEMARANMITANMGRRYWVEAVRSSVYCLNRAPTRPHDGGTPYEKGHGETPKLDHLRVFGCTVYVILFPAPPITPAVTRSRAQGEQA-----GGTKTED--RTSASEMPPILSTHSLPAASANPFNVFSDGDDGENNGDTKMKDAEPSVKDAPSAGTAAPASRGNTRKQSGTEAQRPRDRPPIRTRARARENREEDPGATARVAKMNGTGNLTEVSKGKPKSAAEALASPETGKWRAAMEEEWGALVKNGTWKSEDLGRLPAGRKAIRTNWIFKRKLKKDGSVARYKARLVAQGFPQVEGGEVFETSAPGARMSTLCTVFSLAAEHDFELEDMDVDAAYLNAPVE*ELFVKLPPEFS-----------------------------------------PFSRDIPFRH--GRITHVRLDRN*TWYSIRGKSSST-----LYGGSMSRRLQYMQAHISLSQYCD*LRHY---VRR*E*WSRSGRTL*CRLGGRCRGPKVHNRICFQAERGARRWRSRKQQLVTWSSTEAKYVAAGEAGKEAVYLRELLGSIGFGCRGSTTLFEDNK*AINLSKGSDAHCRTKHIGVRWHGIREWIREGILSLKYVQAGDQLADILTKGL 1827
            IK  RSD GGEY  K F+ F A  G+  + S    PQQNGVAER  R+I EMARA  + AN+ + +W EA  + V+ +NR PT   D  +P EK HG  PK + L++FGCT YV+L       P    S+   +       G ++T+   R    E    L T+S       P                            P + T+ P +         T        P +  R  +R  R  D     R++  +    L+      P+S  +A    E+ KW  AM+EE  AL  N TW   D+  LP  +  + + W++  KLK DGS+ RYKARLVAQGF Q  G +  ET AP A+M+T+ T+ +++A  D+++  MDV  A+LN  +   ++++ PP  S                                         P +    +R   G + ++ + R    ++++  S        L+  ++ R ++Y+++   L      L +Y   + + + +S +        GG     +     C         W+S+KQ  V+ SSTEA+Y A      E V+LR LL   G      T LF DN+ A+ ++     H RTKHI +  H +RE   +GI++L +V   DQ+ADILTK L
Sbjct:  235 IKILRSDSGGEYIPKEFKAFLASEGVVHQCSCTEQPQQNGVAERKHRHIQEMARALRLHANLPKVFWAEAANTVVFLINRLPTPLLDNVSPLEKLHGYPPKYNLLKIFGCTCYVLL-------PKTEYSKLDAKSVKCIFLGYSETQKGYRCYDWEAKKPLLTYSRRVQHPPPM--------------------------PPPSXTSTPGNVSXXXXXXXT--------PQLSLRRSSRIIRPPD-----RLSLFSALDPLSI-----PRSYKQAA---ESAKWIQAMKEEMDALEANETW---DIVPLPTNQPVVGSKWVYSVKLKSDGSLDRYKARLVAQGFSQEYGIDYDETFAPVAKMTTVRTLIAISAIRDWDIFQMDVKNAFLNGDLSETVYMRPPPGSSYCLSSYGLQITQSTIWPKTSTSSVVDTPLEVNVKYSKNDGEPITDPTLYRRVVGSLVYLTVTRPDIAHAVQLVSQFVSDPRRLHLTALHRIIRYLRSTSDLG-----LPYYKSALPQLQAYSDAD------YGGCPDTRRSTTGYCSFLGSSLLSWKSKKQPTVSKSSTEAEYRAMSAVCSEIVWLRRLLADFGMTPSIPTPLFCDNESAVKIASNPVFHERTKHIEIDCHFVREKFEQGIITLPHVSTKDQIADILTKSL 833          
BLAST of mRNA_H-paniculata_contig15120.3032.1 vs. uniprot
Match: A0A4C1T256_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1T256_EUMVA)

HSP 1 Score: 206 bits (523), Expect = 1.030e-52
Identity = 192/673 (28.53%), Postives = 298/673 (44.28%), Query Frame = 1
Query:    1 IKCRRSDQGGEYTGKPFRQFCAENGIKWEFSAAYTPQQNGVAERSWRNIFEMARANMITANMGRRYWVEAVRSSVYCLNRAPTRPHDGGTPYEKGHGETPKLDHLRVFGCTVYVILFPAPPITPAVTRSR-----AQGEQAGGTKTEDRTSASEMPPILSTHSLPAASANPFNVFSDGDDGENNGDTKMKDAEPSVKDAPSAGTAAPASRGNTRKQSGTEAQRPRDRPPIRTRARARENREEDPGATARVAKMNGTGNLTEVSKGKPKSAAEALASPETGKWRAAMEEEWGALVKNGTWKSEDLGRLPAGRKAIRTNWIFKRKLKKDGSVARYKARLVAQGFPQVEGGEVFETSAPGARMSTLCTVFSLAAEHDFELEDMDVDAAYLNAPVE*ELFVKLPPEFS----------------------------------PFSRDIPFRHGRITHVRLDRN*TWYSIRGKSSSTLYGG--------SMSRRLQYMQAHI------------SLSQYCD*LRHYVRR*E*WSRSGRTL*CRLGGRCRGPKVHNRICFQAERGARRWRSRKQQLVTWSSTEAKYVAAGEAGKEAVYLRELLGSIGFGCRGSTT---LFEDNK*AINLSKGSDAHCRTKHIGVRWHGIREWIREGILSLKYVQAGDQLADILTKGLRR 1833
            IK  RSD G EY+ K F  F   NGI    S  YTPQQNG++ER  R + E A+  M  A++ + YW +AV ++ Y +NR+PT      TP+E   G+ P L ++R+FGC   V + P         +SR        E   G +  D   A++       H L     N  N  S+ D  +   +T +    PSV  +P+  T                         I+TR R R+ +  +  ++  +  MNG    + +    P+S  EAL S E+ KW+ AM+EE+ +L+ N TW   D   LP G+K I   W+FKRK    G + RYKARLV +G+ Q +G +  E  AP  R +++  +  +AA+++ E+  MD   A+L   V+ ++++  PP F                                      R++P++      + L +          +S + Y G        ++ R  +Y++A I            +++ YCD           W+             C G        F  +  A  W S+KQ  +  SSTEA+Y +   A +EA++ ++L     +    S     ++ DN+ AI +      H R+KHIGVR+H IRE I +  + +KY ++ D  ADILTKGL R
Sbjct:  510 IKILRSDNGLEYSNKNFADFLKNNGILHHTSNPYTPQQNGLSERMNRTLVERAKCMMFNADLSKSYWAKAVTTAAYIINRSPTHALSDITPHEVWTGQKPDLSNIRIFGCPAMVHI-PKEKRQKLDMKSRQLIFVGYSECTKGYRFMDP-KANKAVISRDVHFL---EENIKNTSSNTDYEDPLDETYLPS--PSVNISPANETG------------------------IKTR-RQRKLQTNNESSSLYIC-MNGE-FTSSLLNNDPQSLEEALQSNESEKWKQAMKEEYESLIHNNTWSLVD---LPGGKKGIPCKWVFKRKFDHTGKITRYKARLVIKGYKQKKGIDYNEIYAPVVRYTSIRYLIDIAAKYNLEIHQMDAITAFLQGDVDEDIYMSQPPTFDREEKILTRFGMDDCKPVWTPCDPNTQLKRAESEEEILRNVPYQEAIGCLLYLSQGTRPDITYIVNSLSRYNGQPTAEHWTTLKRVFRYLKATIDYKLTYHGNSEGNITGYCD---------ADWASHSEDR-----RSCTG------YVFILQGAAISWCSKKQLTIALSSTEAEYTSLATAVQEAIWQKQLDED--YWPESSAVPIVVYCDNQSAIRILDSESYHQRSKHIGVRYHFIRERIADKQVLVKYQRSQDMTADILTKGLHR 1123          
BLAST of mRNA_H-paniculata_contig15120.3032.1 vs. uniprot
Match: A0A2N9GWV7_FAGSY (Integrase catalytic domain-containing protein n=3 Tax=fabids TaxID=91835 RepID=A0A2N9GWV7_FAGSY)

HSP 1 Score: 205 bits (522), Expect = 1.370e-52
Identity = 199/699 (28.47%), Postives = 306/699 (43.78%), Query Frame = 1
Query:    1 IKCRRSDQGGEYTGKPFRQFCAENGIKWEFSAAYTPQQNGVAERSWRNIFEMARANMITANMGRRYWVEAVRSSVYCLNRAPTRPHDGGTPYEKGHGETPKLDHLRVFGCTVYVILFPAPPITPAVTRS-----RAQGEQAGGTKTEDRTSASEMPPILSTHSLPAASANPFNVFSDGDDGENNGDTKMKDAEPSVKDAP----------SAGTAAPASRGNTRKQSGTEAQRPRDRPPIRTRARARENREEDPGATARVAKMNGTG------NLTEVSKGKPKSAAEALASPETGKWRAAMEEEWGALVKNGTWKSEDLGRLPAGRKAIRTNWIFKRKLKKDGSVARYKARLVAQGFPQVEGGEVFETSAPGARMSTLCTVFSLAAEHDFELEDMDVDAAYLNAPVE*ELFVKLPPEFSPF-SRDIPFR-HGRITHVR------------------LDRN*TWYSIRGK-----------------SSSTLYGGSMSR-----------------RLQYMQAHISLSQYCD*LRHYVRR*E*WSRSG-----RTL*CRLGGRCRGPKVHNRICFQAERGARRWRSRKQQLVTWSSTEAKYVAAGEAGKEAVYLRELLGSIGFGCRGSTTLFEDNK*AINLSKGSDAHCRTKHIGVRWHGIREWIREGILSLKYVQAGDQLADILTKGLRRVQFQRLKK 1857
            +KC R+D+GGE+    F  FC ++GIK + +AAYTPQQNGVAER  R +  M  + +   N+ + +W E V  ++Y LNR PT      TP E   G  P +DH RVFGC  +V  FP    T    RS         E++ G +  D  +      ++ +  +         +F +    E   D  +   E  V D              G +   +R NT  +   E +        R R   R++RE  P  T     ++G G      ++  V    P    EA+ S     WR AM  E  ++ KN TW    L  LPAG K I   W++K K  + G + +YKARLVA+G+ Q  G +  E  AP ARM T+  + +LAA+ ++ +  +DV +A+L+  +  E++V+ P  +    S  + ++ H  ++ +R                  L ++   Y  + K                  S  + G  +SR                  L Y+ A      +   L   +     + + G             G     K  +   F     A  W S+KQ +VT S+TEA++VAA     + V+++ +L  +G    G TT+  DN   I LSK    H R+KHI VR+H +R   +EG + L +  + DQ+ADI+TK L+   FQ+L+K
Sbjct:  455 VKCLRTDRGGEFNSNEFNDFCKQSGIKRQLTAAYTPQQNGVAERKNRTVMNMVCSMLSDKNIPKTFWPEVVNWTIYVLNRCPTLAVKDVTPEEVWSGVKPSIDHFRVFGCIAHVH-FPEERRTKLDNRSITCVLLGVSEESKGYRLFDPVAKR----VVVSRDV---------IFEE----EKQWDWDVSYEEQIVVDLEWGDXXXXXXXEGGVSENGNRENTDVEGVREEEDGSSEGEERVRE-LRQSRERQP-PTWMGDYVSGEGLFEDEVHMALVESTDPLYFEEAVKSAN---WRLAMNSEIKSIEKNQTWT---LTELPAGAKRIGVKWVYKTKYNEHGKIDKYKARLVAKGYSQKYGVDYTEVFAPVARMDTVRMIIALAAQKNWTIFQLDVKSAFLHGELSEEVYVEQPRGYEKKGSEHLVYKLHKALSMLREFDMSDLGKMRFFLGIEVLQKSDGIYICQRKYALEILRRFGMMESNSVGSPIVPGFKISRDENGDFVDETYYKQLVGSLMYLTATRPDMMFVTFLIRTMNYGIHYKKGGDGELLAFTDSDYAGDMENRKSTSGYVFLMSSSAVSWCSKKQPIVTLSTTEAEFVAAAVCACQGVWMKRILKELGHSDGGCTTVMCDNSSTIKLSKNPVMHGRSKHIDVRFHFLRNLTKEGTIELVHCGSQDQVADIMTKPLKLEAFQKLRK 1127          
BLAST of mRNA_H-paniculata_contig15120.3032.1 vs. uniprot
Match: A0A2Z6PCB3_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6PCB3_TRISU)

HSP 1 Score: 203 bits (517), Expect = 6.590e-52
Identity = 188/640 (29.38%), Postives = 290/640 (45.31%), Query Frame = 1
Query:    1 IKCRRSDQGGEYTGKPFRQFCAENGIKWEFSAAYTPQQNGVAERSWRNIFEMARANMITANMGRRYWVEAVRSSVYCLNRAPTRPHDGGTPYEKGHGETPKLDHLRVFGCTVYVILFPAPPIT------PAVTRSRAQGEQAGGTKTEDRTSASEMPPILSTHSLPAASANPFNVFSDGDDGENNGDTKMKDAEPSVKDAPSAGTAAPASRGNTRKQSGTEAQRPRDRPPIRTRARARENREEDPGATARVAKMNGTGNLTEVSKGKPKSAAEALASPETGKWRAAMEEEWGALVKNGTWKSEDLGRLPAGRKAIRTNWIFKRKLKKDGSVARYKARLVAQGFPQVEGGEVFETSAPGARMSTLCTVFSLAAEHDFELEDMDVDAAYLNAPVE*ELFVKLPPEFSPFSRDIPFRHGRITHVRLDRN*TWYSI--------RGKSSSTLYGGSMSRRLQYMQAHISLSQYCD*LRHYVRR*E*WSRSGRTL*CRLGGRCRGP---KVHNR-----ICFQAERGARRWRSRKQQLVTWSSTEAKYVAAGEAGKEAVYLRELLGSIGFGCRGSTTLFEDNK*AINLSKGSDAHCRTKHIGVRWHGIREWIREGILSLKYVQAGDQLADILTKGLRRVQFQRLK 1854
            +K  R++ GGEY    F + C   GI  E    YTPQQNG AE   R I  M R  +   ++ +  W EA+ ++ Y LN  PT+  +G TP E      P + HLRVFG   Y  +   P  +       A+T         GG K  D  + +    ++ +  +         VF +  + + N   K       +++             NT     T+ +R       RTRA     +E +      V       +L  +++ +P     AL S    KWR AM+EE  ++  N TW+  D   LP  ++AI   W++K K+   G V R+KARLVA+GF Q EG +  E  AP  RM T+  V  +A  +D+ +  MDV +A+LN P+E E+FV  PP +           G + ++   R    YS+        + KSS  +   ++ R L+Y++  I    +             +  + R   C+L G         V +R       F        W S+K+ +V  SS EA+Y+AA     +A++LR L+  I      + TL  DN  AINL+K   AH R+KHI +R+H +RE +    L+L+Y ++ +Q+AD+ TK +    FQ+L+
Sbjct:  604 LKVLRTNGGGEYVSHDFAELCESEGIVHEVIPPYTPQQNGSAEMRNRTIMNMVRCMLKGKHLPKELWGEAIATATYILNLCPTKRLNGITPEECWSKNKPSVKHLRVFGSIAYKHV---PDQSRRKLDDKAITMILVGYHSTGGYKLYDPVNKN----VVVSRDV---------VFDEMKEWDWNMQEKKSSTSVMLEELEE----------NTEIVPETDMRRS-----TRTRALPARLQECELNKDDEVINDGDLVHLAFMAELEPIDVISALKSE---KWRCAMKEELDSIKSNQTWELVD---LPQNKRAIDVKWVYKLKMNSKGEVTRHKARLVARGFLQKEGIDYGEVFAPVTRMETIRLVTVIANINDWPMYQMDVKSAFLNGPIEEEVFVTQPPGYELI--------GSLRYLCNTRPDLAYSVGIVSRFMDKPKSSHLI---AVKRILRYVKGTIDYGVF-------------FPANDRKNECKLMGYTDSNWCGDVEDRKSTAGYIFYFGEAPISWCSKKEPVVALSSCEAEYIAASLRTCQAIWLRNLIEEISLVKCNTVTLKVDNVSAINLAKNPIAHGRSKHIEMRFHYLREQVNNENLTLEYCKSDEQVADLFTKAVAVQVFQKLR 1182          
BLAST of mRNA_H-paniculata_contig15120.3032.1 vs. uniprot
Match: A0A2Z6P3P6_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6P3P6_TRISU)

HSP 1 Score: 201 bits (512), Expect = 2.900e-51
Identity = 185/690 (26.81%), Postives = 298/690 (43.19%), Query Frame = 1
Query:    1 IKCRRSDQGGEYTGKPFRQFCAENGIKWEFSAAYTPQQNGVAERSWRNIFEMARANMITANMGRRYWVEAVRSSVYCLNRAPTRPHDGGTPYEKGHGETPKLDHLRVFGCTVYVILFPAPPITPAVTRSRAQGEQAG----GTKTEDRTSASEMPP---ILSTHSLPAAS---------ANPFNVFSDGDDGE------------NNGDTKMKD---AEPSVKDAPSAGTAAPASRGNTRKQSGTEAQRPRDRPPIRTRARARENREEDPGATARVAKMNGTGNLTEVSKGKPKSAAEALASPETGKWRAAMEEEWGALVKNGTWKSEDLGRLPAGRKAIRTNWIFKRKLKKDGSVARYKARLVAQGFPQVEGGEVFETSAPGARMSTLCTVFSLAAEHDFELEDMDVDAAYLNAPVE*ELFVKLPPEF-SPFSRDIPFRHGRITHVRLDRN*TWYS---------------IRGKSSSTLYGGSMSRRLQYMQAHISLSQYCD*-----------LRHYVRR*E*WSRSGRTL*CR-------------LGGRCRGPKVHNRICFQAERGARRWRSRKQQLVTWSSTEAKYVAAGEAGKEAVYLRELLGSIGFGCRGSTTLFEDNK*AINLSKGSDAHCRTKHIGVRWHGIREWIREGILSLKYVQAGDQLADILTKGLRRVQFQRLKK 1857
            I C R+D+GGE+    FR+FC E+GIK + +AAYTPQQNG+AER  R I +M ++ +   ++ + +W EAV  ++Y LNR+PT      TP E      P + H +VFGC  +  +       P   R +   +       G   E +      PP   I+ +  +             ++P N  S+  D E            NN      D   +E  V +  S  ++A     N+    GT       R P    A       ED         +   G        K + A ++        WRAAME E  ++ +N TW+  D   LP G K I   WI+K KL + G + ++KARLVA+G+ Q  G +  E   P AR  T+  + ++AA   +++  +DV +A+L+  +   ++V+ P  F    S +  ++  +  +        W                   G +S  + G   S    +    +   ++ +            +  Y+R     +R  R L  R              GG     K  +   F    GA  W SRKQ +VT S+TEA+++AA     + ++L+ +L S+G   +    +F DN   I LSK    H R+K+I +++H +R    +G + L++  + +Q+ADI+TK L+   F+ LKK
Sbjct:  507 ICCLRTDRGGEFNSDEFREFCEEHGIKRQLTAAYTPQQNGIAERKNRTIMDMVKSMLAAKDIPKEFWPEAVNWAIYVLNRSPTAAIPDKTPEEAWSSSKPTVKHFKVFGCIAHTYV-------PDAHRKKLDDKSIKCIFLGVSEESKAYRLYHPPTKRIIISRDVKFVEQEKWKWSQVSDPANTVSEDSDEELDERNNVGEEPINNHHEDTHDDTSSEIQVNEHTSTSSSANTGDSNSNLDQGTI------RKPPSWPADYDTTMTEDEYIDEEAMNLIVFGPCIHEDPIKFEDAEKSQT------WRAAMENEIDSIERNNTWELTD---LPKGAKVIGVKWIYKTKLNEKGEIEKFKARLVAKGYAQKYGTDYKEVFVPVARWDTIRCLLAIAAMKGWDVYQLDVKSAFLHGELHETVYVEQPLGFIKRGSENKVYKLHKALYGLKQAPRAWNDDSDLLIISLYVDDLIFTGNNSVMVKGFKESMMKTFDMTDLGKMRFMEHPVETHMMAAKRILRYIRG----TRELRVLYKRGNQTGLIAYSDSDFGGDVDDRKSTSGYLFMLGSGAVSWSSRKQPIVTLSTTEAEFIAAAHCVCQGIWLKRILESMGLKQQRCLDVFCDNSSTIKLSKNPVLHGRSKYIDIKFHFLRNLSCDGTIELEHCTSQNQIADIMTKALKLESFENLKK 1170          
BLAST of mRNA_H-paniculata_contig15120.3032.1 vs. uniprot
Match: A0A6A4BSQ8_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4BSQ8_9STRA)

HSP 1 Score: 194 bits (492), Expect = 4.160e-50
Identity = 187/647 (28.90%), Postives = 286/647 (44.20%), Query Frame = 1
Query:    1 IKCRRSDQGGEYTGKPFRQFCAENGIKWEFSAAYTPQQNGVAERSWRNIFEMARANMITANMGRRYWVEAVRSSVYCLNRAPTRPHDGGTPYEKGHGETPKLDHLRVFGCTVYVILFPAP--PITPAVTRSRAQGEQAG--GTKTEDRTSASEMPPILSTHSLPAASANPFNVFSDGDDGENNGDTKMKDAEPSVKDAPSAGTAAPASRGNT-----RKQSGTE-AQRPRDRPPIRTRARARENRE-----EDPGATARV---------------AKMNGTGNLTEVSKGK--------PKSAAEALASPETGKWRAAMEEEWGALVKNGTWKSEDLGRLPAGRKAIRTNWIFKRKLKKDGSVARYKARLVAQGFPQVEGGEVFETSAPGARMSTLCTVFSLAAEHDFELEDMDVDAAYLNAPVE*ELFVKLPPEFSPFSRDIPFRHGRITHVRLDRN*TWYSIRGKSSSTLYGGSMSRRLQYMQAHISLSQYCD*LRHYVRR*E*WSRSGRTL*CRLGGRCRGPKVHNRICFQAERGARRWRSRKQQLVTWSSTEAKYVAAGEAGKEAVYLRELLGSIGFGCRGSTTLFEDNK*AINLSKGSDAHCRTKHIGVRWHGIREWIREGILSLKYVQAGDQLADILTKGL 1827
            IK  RSD GGEYTG+ F+++ ++ GI+ E +  YTPQQNG+AER  R++ EMAR  +    + +++W EAV +S + +NR P       TPYE  + + P+L +L+VFG   Y  +       +     + R  G + G  G +  +  +  ++  + +   +   S   F    +GDD + + D     A      APS G     +  N      + +  TE A  P     I TR+R R  +E     E  G   ++               A++  T  L  +  G+        PK+ AEA       +W+ A+  E  +L+ N TWK   L   PA ++ I   W+F  K  + G V RYKARLVA+G+ Q  G +  ET +P A ++++  + +       E+E  DVDAA+L   +E E++++LP        D+    G+   V +                         LQ +  H                                  C  P V              WRS  Q+ V  SSTEA+Y+A  +  KE V++R LL  IG    G T ++EDN+ A+ L+K      RTKHI +R+H IRE +    + L+YV   +QLAD +TK L
Sbjct:   56 IKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAERMNRSLVEMARCMLYHEGIDKKWWAEAVNTSAWIINRIPNTV-TVKTPYEIVYQKKPQLQNLKVFGALGYGHIPDEKRRKLYAKAFKCRYLGYEDGVKGCRVLNMETG-QVRIVRTVKFMETTSTGDFVTEVEGDDKDGDEDVAAPHAT-----APSRGQTQTLTIFNDEVVPLQHEVTTETAIVPASSHSIITRSRTRHIKETTDPEEAEGRKKQIVAPSAIGTDRQKVSQARVKPTEELLAIEGGQLMAATEEVPKTYAEATTRQGQDEWKKAIASELESLIANKTWK---LVPKPAHQRPIGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGIDYEETYSPFAYLNSVRAMLAKCGAEGMEIEQCDVDAAFLYGKLEEEIYMELPEGLKELL-DLAEAEGKDDVVCM------------------------LLQILYGH----------------------------------CGAPVV--------------WRSMFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAEQVGHTVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSNEVELEYVDTKNQLADFMTKSL 619          
BLAST of mRNA_H-paniculata_contig15120.3032.1 vs. uniprot
Match: A0A2K3MY74_TRIPR (Retrotransposon-related protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MY74_TRIPR)

HSP 1 Score: 197 bits (501), Expect = 8.500e-50
Identity = 205/798 (25.69%), Postives = 304/798 (38.10%), Query Frame = 1
Query:    1 IKCRRSDQGGEYTGKPFRQFCAENGIKWEFSAAYTPQQNGVAERSWRNIFEMARANMITANMGRRYWVEAVRSSVYCLNRAPTRPHDGGTPYEKGHGETPKLDHLRVFGCTVYVI-----------------------------LFPAPPITPAVTRSRAQGEQAGGTKTEDRTSASEMPPILSTHSLPAASANPFNVFSDGDDGENNGDTKMKDAEPSVKDAPSAGTAAPASRGNTRKQSGTEAQRPRDRPPIRTRARARENREEDPGATARVAKMNGTGNLTEVSKGKPKSAAEALASPETGKWRAAMEEEWGALVKNGTWKSEDLGRLPAGRKAIRTNWIFKRKLKKDGSVARYKARLVAQGFPQVEGGEVFETSAPGARMSTLCTVFSLAAEHDFELEDMDVDAAYLNAPVE*ELFVKLPPEFSPFSR-DIPFRHGRITHVRLDRN*TWYSI-----------RGKSSSTLY-----GGS-------------------------MSRRLQYMQAHISLSQY---------------CD*LRHYVRR*---------------------------------------------------------------------E*WSRSGRTL*CRLG-------------------------GRCRGPKVHNRICFQAERGARRWRSRKQQLVTWSSTEAKYVAAGEAGKEAVYLRELLGSIGFGCRGSTTLFEDNK*AINLSKGSDAHCRTKHIGVRWHGIREWIREGILSLKYVQAGDQLADILTKGLRRVQFQRLK 1854
            IKC R+D+GGEY  K F +FC+ +GI  + +AAYTPQQNGVAER  R I  M R+ +    M + +W EA   S++ LNR PT   +  TP E   G  P++DH R+FGC  +V                              LF   PIT  +T SR    +        ++       +L      + +     +  D D   NN    +     +     S G+   +  G  R+  G  +                   +  PG              TE     P +  EA       KWR AM +E  ++ KNGTW+   L  LP+G KAI   WIFK KL + G+V +YKARLVA+G+ Q  G +  E  AP AR+ T+  + + AA++ +E+  +DV +A+L   ++ E++V+ P  F      D  ++  +  +        WYS            R  S  TL+     GG                          MS   ++  + +    Y               C   R Y R                                                                       E W  + R L    G                         G     K  +   F    GA  W S+KQ +VT S+TEA+Y+AA     + ++L  LL  +G      + ++ DN   I LSK S  H ++KHI V++H +R+ + EG + LKY    +Q+ADI+TK L++ QF +L+
Sbjct:  554 IKCLRTDRGGEYNSKEFTEFCSTHGINRQLTAAYTPQQNGVAERKNRTIMNMVRSMLSEKQMPKEFWAEAANWSIHILNRCPTTALENMTPQEAWTGCKPRVDHFRIFGCLAHVHVPDQKRIKLDDKSKTHIFLGVSKESKAYKLFD--PITKKITISRDVKFEENACWKWKQSKGEVQSDVLDLEDKNSDANKELELEEDSDS--NNTSNTISQTGGNSSTTSSGGSEPNSPTGRFRRAPGWMS-------------------DYTPGEGLSEEXXXXXXXXTEED---PVTYNEAAKEK---KWRDAMAKEIDSIEKNGTWR---LTTLPSGVKAIGVKWIFKTKLNEHGNVEKYKARLVAKGYAQQYGIDYTEVFAPVARLDTIRLILATAAQNKWEVYQLDVKSAFLQGELKEEVYVQQPTGFEKKGEEDKVYKLNKALYGLKQAPRAWYSRIESYFIREGFERCASEHTLFTKEKEGGKILIVSLYVDDLIYTGNNESICEEFKMSMMHEFDMSDLGKMSYFLGMEIIQNSKGIFMCQ--RKYAREVLARFGMSDSKPVGNPIVPGTRLSKDEKGTKIDSTMFKQVVGSLMYLTATRPDIMFGVSLISRYMSSPTEEHWCAAKRILRYINGTIEMGILYKGESITELVAYTDSDFAGDLNDRKSTSGFAFLLAGGAVSWASKKQPVVTLSTTEAEYIAAASCACQYIWLTRLLEKLGHKGEEGSIMYCDNSSTIQLSKHSVFHGKSKHIDVKFHFLRDLVNEGTVKLKYCNTQNQVADIMTKPLKKEQFIKLR 1317          
BLAST of mRNA_H-paniculata_contig15120.3032.1 vs. uniprot
Match: A0A5N5G876_9ROSA (Uncharacterized protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5G876_9ROSA)

HSP 1 Score: 196 bits (497), Expect = 2.890e-49
Identity = 202/743 (27.19%), Postives = 313/743 (42.13%), Query Frame = 1
Query:    1 IKCRRSDQGGEYTGKPFRQFCAENGIKWEFSAAYTPQQNGVAERSWRNIFEMARANMITANMGRRYWVEAVRSSVYCLNRAPTRPHDGGTPYEKGHGETPKLDHLRVFGCTVYV-----------------ILFPAP----------PITPAVTRSR-----AQGEQAGGTKTEDRTSASEMPPILSTHSLPAASANPFNVFSDGDDGENNGDTKMKDAEPSVKDAPSAGTAAPASRGNTRKQSGTEAQRPRDRPPIRTRARARENREEDPGATARVAKMNGTGNLTEVSKGKPKSAAEALASPETGKWRAAMEEEWGALVKNGTWKSEDLGRLPAGRKAIRTNWIFKRKLKKDGSVARYKARLVAQGFPQVEGGEVFETSAPGARMSTLCTVFSLAAEHDFELEDMDVDAAYLNAPVE*ELFVKLPPE-----------------------------FSPFSRDI------------------------------------------------PFRHGRITHVRLDRN*------TWYSIRGKSSSTLYGGSMSRRLQYMQAHISLS---------QYCD*LRHYVRR*E*---WSRSGRT------L*CRLGGRCRGPKVHNRICFQAERGARRWRSRKQQLVTWSSTEAKYVAAGEAGKEAVYLRELLGSIGFGCRGSTTLFEDNK*AINLSKGSDAHCRTKHIGVRWHGIREWIREGILSLKYVQAGDQLADILTKGLR 1830
            I+  R+D+GGE+T   F  FC ENGI  + + AYTPQQNGVAER  R I  M R+ +    + + +W EA   +V+ LNR PT      TP E  +G  P +DH R+FGC  +                  IL              P++  +  SR        + + G   +D   A          S P  +++P   F   D G+        + EP ++     GT      G+   ++     R R RPPI  R       + + G      + +   +L       P +  +A+ S    KWR AM +E  ++ KN TW   +L +LP G K I   W+FK KLK++G V +YKARLVA+G+ Q  G +  E  AP AR+ T+  V SLAA+ ++ +  +DV +A+L+  +E E+FV  PP                              F  F + +                                                P ++  +  ++L +N       T Y  R    S +Y  +    L ++ + IS           Q    +  YV+       + + G T            G     K  +   F    GA  W S+KQ +VT S+TEA+++AA  +  + V+LR ++ S+     G T ++ DN  AI LSK    H R+KHI +R+H +R+ +++G+L L    + +Q+AD+LTK L+
Sbjct:  674 IRSLRTDRGGEFTSHEFSNFCRENGIHRQLTTAYTPQQNGVAERKNRTIMNMVRSMLSAKQIPKTFWPEATNWAVHVLNRCPTLAVKNKTPEEAWNGHKPSVDHFRIFGCIAHAHVPDHKRVKLDAKSCKCILLGVSEESKAYRLYEPVSQKIVISRDVVFEEDQQWSWGDNYKDVIVADLEWNDDEEISSPRTTSDPG--FESNDVGD--------EPEPEIEYE---GTMV--GEGSQSDETSPHGGRTR-RPPIWMR-------DYETGQGLSDEETDEMAHLALFIDRDPTTYEDAMKSE---KWRHAMNQEIQSIEKNDTW---ELVKLPPGGKTIGVKWVFKTKLKENGEVDKYKARLVAKGYCQQYGIDYAEVFAPVARLDTIRVVISLAAQKNWGIYQLDVKSAFLHGEIEEEVFVDQPPGYEQKGQESKILIACLYVDDLIFTGNDETMFEKFKKSMTAEFDMTDLGKMRYFLGIEVIQRSDGVFIGQRKYAQEILEKFNMEQCNPVQNPVVPGLKLTKNEGVEVDSTVY--RQMVGSLMYLTATRPDLMFVVSLISRYMERPTEEHLQVAKKVLRYVKGTVDLGIFYKKGGTEELTGYTDSDYAGDQDDRKSTSGYVFMISSGAVSWSSKKQPVVTLSTTEAEFIAAASSACQVVWLRRIMESLNQEQNGPTLVYCDNVSAIKLSKNPVMHGRSKHIDIRFHFLRDLVKDGVLELVQCSSQEQVADVLTKPLK 1385          
BLAST of mRNA_H-paniculata_contig15120.3032.1 vs. uniprot
Match: A0A1R3JWQ0_COCAP (Uncharacterized protein n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3JWQ0_COCAP)

HSP 1 Score: 195 bits (496), Expect = 4.510e-49
Identity = 195/719 (27.12%), Postives = 305/719 (42.42%), Query Frame = 1
Query:    1 IKCRRSDQGGEYTGKPFRQFCAENGIKWEFSAAYTPQQNGVAERSWRNIFEMARANMITANMGRRYWVEAVRSSVYCLNRAPTRPHDGGTPYEKGHGETPKLDHLRVFGCTVYVILFPAPPITPAVTRSRA--QGEQAGGTKTEDRTSASEMPPILSTHSLPAASANPFNVFSDGDDGENNGDTKMKDAEPSVKDAPSAGTAAPASRGNTRKQSGTEAQRPRDRPPIRTRARARENREEDPGATARVAKMNGTGN--------LTEVSKGKPKSAAEALASPETGKWRAAMEEEWGALVKNGTWKSEDLGRLPAGRKAIRTNWIFKRKLKKDGSVARYKARLVAQGFPQVEGGEVFETSAPGARMSTLCTVFSLAAEHDFELEDMDVDAAYLNAPVE*ELFVKLPPEFSPFSRD-----------------------------------IPFRHGRITHVRLDR-----------N*TW---YSIRGKS------------------------------------------SSTLYGGSMSRRLQYMQAHISLSQYCD*LRHYVRR*-E*WSRSGRTL*CRLGGRCRGPKVHNRICFQAERGARRWRSRKQQLVTWSSTEAKYVAAGEAGKEAVYLRELLGSIGFGCRGSTTLFEDNK*AINLSKGSDAHCRTKHIGVRWHGIREWIREGILSLKYVQAGDQLADILTKGLRRVQFQRL 1851
            IK  RSD+GGE+T   F  FC   GIK + +A +TPQQNGV ER  R I +M R+ +  ++M R +W EAV  S + LNR+P+R  +  TP E   G  P + + RVFGC  Y  +       P   R +   +GE+       + + A ++    +   + +       VF++ +    +   +M      + D        P       +Q    + RP+    I+ R+   E  E           + G  N        L   +   P    EA+   +  KW+ AM EE  A+ KN TW+  D   LP G KAI   W++K K+K +G V +YKARLV +G+ Q  G +  E  AP AR+ T+  V +LAA++ + +  +DV +A+L+  ++ ++FV+ P  F  +  +                                    P+ H        D+           + +W   YSIRG+                                           +S+L+   +   +    +   +      +  ++ +  +    + + +   L G     K      F+    A  W S+KQ +VT SSTEA+YVAA     +AV++R  L  +    RG+T +F DN  AI LSK    H RTKHI VR+H +RE + +G + L Y +  DQ  DI TK L+   F +L
Sbjct:  550 IKMLRSDRGGEFTSDEFVTFCENAGIKRQMTAPHTPQQNGVCERKNRTILDMVRSILRRSSMPRTFWPEAVAWSTHVLNRSPSRALNS-TPEEAWSGVRPAVHYFRVFGCIAYAHV-------PDQKRKKLDDKGEKCVLLGVSEESKAYKLYNPTTKKLIISRDV----VFNENEFWPWDSPREMSKTASILDDEVDEVVVQPVVPQQQMQQEIGVSTRPQR---IKRRSTLLEGFE-----------VTGLPNFDSDHVSQLALFADCDPVLFEEAV---KEAKWQKAMAEEIKAIEKNNTWELVD---LPEGEKAIGVKWVYKTKVKPNGEVDKYKARLVVKGYKQEYGVDYTEVFAPVARLDTVRMVIALAAQNSWSIYQLDVKSAFLHGELKEQVFVEQPSGFIKYGDEHKVYRLRKALYGLKQAPRAWYSRIDSYFVKEGFLKCPYEHTLYVKHDGDKMMIICLFGDASSLSWFGDYSIRGRHFCLPKKYVNEVLDRFQMGDCNCATTPMEQSLKLVKNPGGEYVNSSLFKQMVGSLMYLTASRPDIMHSVGIISRFMEKPMQQHLLAAKRILRYLKGTPDFGKSTTGYVFKLGSAAIAWSSKKQPIVTLSSTEAEYVAATSGACQAVWMRRTLAEMKMEMRGATRMFCDNSSAIKLSKNPVFHGRTKHIHVRFHFLRELVEKGEIELSYCRTEDQAVDIFTKPLKAASFFKL 1236          
BLAST of mRNA_H-paniculata_contig15120.3032.1 vs. uniprot
Match: A0A4Y1RLR1_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RLR1_PRUDU)

HSP 1 Score: 194 bits (494), Expect = 6.840e-49
Identity = 192/738 (26.02%), Postives = 294/738 (39.84%), Query Frame = 1
Query:    1 IKCRRSDQGGEYTGKPFRQFCAENGIKWEFSAAYTPQQNGVAERSWRNIFEMARANMITANMGRRYWVEAVRSSVYCLNRAPTRPHDGGTPYEKGHGETPKLDHLRVFGCTVYVILFPAPPITPAVTRSRAQGEQAGGTKTEDRTSASEMPPILSTHSLPAASANPFNVFSDGDDGENNGDTKMKDAEPSVKDAPSAGTAAPASRGNTRKQSGTEAQRPRDRPPIRTRARARENREEDPGATARVAKMNGTGNLTEVSKGKPKSAAEALASPETGKWRAAMEEEWGALVKNGTWKSEDLGRLPAGRKAIRTNWIFKRKLKKDGSVARYKARLVAQGFPQVEGGEVFETSAPGARMSTLCTVFSLAAEHDFELEDMDVDAAYLNAPVE*ELFVKLPPEFSP------------------------FSR-DIPF-------------------RHGRITHVRLDRN*TWYSIRGKSSSTLYGGSMSRRLQ---------------------------------YMQAHISLSQYCD*LR----------------------------------------HYVRR*E*WSRSGRTL*CR---LGGRCRGPKVHNRICFQAERGARRWRSRKQQLVTWSSTEAKYVAAGEAGKEAVYLRELLGSIGFGCRGSTTLFEDNK*AINLSKGSDAHCRTKHIGVRWHGIREWIREGILSLKYVQAGDQLADILTKGLRRVQFQRLK 1854
            +KC R+D+GGE+T   F  FC ++GIK + + AYTPQQNGVAER  R +  M R+ +    + + +W EAV  + Y LNR PT      TP E   G  P ++H RVFGC  +V +       P   R    GE     + E+R S                           ++G+ +G                 G        N   ++    +RP   PP      + E   ED    A+V           V+   P    EA+ +    KWR AM+ E  ++ KN TW    L  LPAG K I   W++K K  + G + ++KARLVA+G+ Q  G +  E  AP ARM T+ T+ +LAA++ +++  +DV +A+L+  +   ++V+ P  +                          FSR +  F                   R G+I  V +  +   ++   +   + +  SM R                                    Y +  +    Y    R                                        HY R        G+ L        G     K  +   F    GA  W S+KQ +VT S+TEA++VAA     +A++++ +L  +G G    T +  DN   I LSK    H R+KHI VR+H +R   +EG ++L +  + DQ+AD++TK L+   FQ+L+
Sbjct:  452 VKCLRTDRGGEFTSNDFNDFCKQSGIKRQLTTAYTPQQNGVAERKNRTVMNMVRSVLSDKKIPKTFWPEAVNWTFYVLNRCPTLVVKNVTPQEAWSGVKPSVEHFRVFGCLAHVHI-------PDARRDLEWGENEENNEGEERVS---------------------------ENGDEDGXXXXXXXXXXXXXXREVGNP------NGPDENEGRVRRP---PPYLNDYISGEGLSEDEAHMAQV-----------VATEDPFHFEEAVRNV---KWRQAMDSEIKSIEKNKTWT---LTELPAGAKKIGVKWVYKTKYNEHGEIDKHKARLVAKGYSQKHGIDYTEVFAPVARMDTVRTIIALAAQNGWKIFQLDVKSAFLHGELSENVYVEQPRGYEKKGKEHLVYKLHKALYGLKQAPRAWFSRIEAHFINEGFQRCDSEQTLFTKRNREGKIIIVSIYVDDLIFTGDDEDMMSEFKSSMLREFDMSDLGSMRFFLGIEVLQRADDSKDEDGITVDETYFKQLVGSLMYLTATRPDMMFVTSLISRYMAKPTELHLQAAKRALRYLKGTVNYGIHYKR-----GGDGKLLAFTDSDYAGDMEDRKSTSGYVFLLSSGAVSWSSKKQPIVTLSTTEAEFVAAAVCACQAIWMKRVLKELGHGDEVCTHIKCDNSSTIKLSKNPVMHGRSKHIDVRYHFLRNLTKEGSIALVHCGSDDQVADVMTKPLKVDAFQKLR 1124          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15120.3032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2N9G413_FAGSY1.820e-5529.54Integrase catalytic domain-containing protein n=1 ... [more]
A0A4C1T256_EUMVA1.030e-5228.53Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9GWV7_FAGSY1.370e-5228.47Integrase catalytic domain-containing protein n=3 ... [more]
A0A2Z6PCB3_TRISU6.590e-5229.38Uncharacterized protein n=1 Tax=Trifolium subterra... [more]
A0A2Z6P3P6_TRISU2.900e-5126.81Uncharacterized protein n=1 Tax=Trifolium subterra... [more]
A0A6A4BSQ8_9STRA4.160e-5028.90Integrase catalytic domain-containing protein n=3 ... [more]
A0A2K3MY74_TRIPR8.500e-5025.69Retrotransposon-related protein (Fragment) n=1 Tax... [more]
A0A5N5G876_9ROSA2.890e-4927.19Uncharacterized protein n=1 Tax=Pyrus ussuriensis ... [more]
A0A1R3JWQ0_COCAP4.510e-4927.12Uncharacterized protein n=1 Tax=Corchorus capsular... [more]
A0A4Y1RLR1_PRUDU6.840e-4926.02Transposable element protein n=1 Tax=Prunus dulcis... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15120contigH-paniculata_contig15120:3641..6240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score124.8
Seed ortholog evalue7.7e-26
Seed eggNOG ortholog65672.G4TQF2
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs227R3@155619,38DPC@33154,3H58M@355688,3NUZ7@4751,3UY7N@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
Exons3
Model size1857
Cds size1011
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15120.3032.1prot_H-paniculata_contig15120.3032.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15120 4872..6087 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929212.7019567-UTR-H-paniculata_contig15120:3640..42761622929212.7019567-UTR-H-paniculata_contig15120:3640..4276Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15120 3641..4276 -
1691480772.556955-UTR-H-paniculata_contig15120:3640..42761691480772.556955-UTR-H-paniculata_contig15120:3640..4276Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15120 3641..4276 -
1622929212.7188025-UTR-H-paniculata_contig15120:4814..48711622929212.7188025-UTR-H-paniculata_contig15120:4814..4871Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15120 4815..4871 -
1691480772.5682797-UTR-H-paniculata_contig15120:4814..48711691480772.5682797-UTR-H-paniculata_contig15120:4814..4871Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15120 4815..4871 -
1622929212.7638402-UTR-H-paniculata_contig15120:6087..62401622929212.7638402-UTR-H-paniculata_contig15120:6087..6240Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15120 6088..6240 -
1691480772.5989838-UTR-H-paniculata_contig15120:6087..62401691480772.5989838-UTR-H-paniculata_contig15120:6087..6240Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15120 6088..6240 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929212.7335417-CDS-H-paniculata_contig15120:4871..56911622929212.7335417-CDS-H-paniculata_contig15120:4871..5691Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15120 4872..5691 -
1691480772.5793679-CDS-H-paniculata_contig15120:4871..56911691480772.5793679-CDS-H-paniculata_contig15120:4871..5691Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15120 4872..5691 -
1622929212.7467756-CDS-H-paniculata_contig15120:5896..60871622929212.7467756-CDS-H-paniculata_contig15120:5896..6087Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15120 5897..6087 -
1691480772.5888488-CDS-H-paniculata_contig15120:5896..60871691480772.5888488-CDS-H-paniculata_contig15120:5896..6087Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15120 5897..6087 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15120.3032.1

>prot_H-paniculata_contig15120.3032.1 ID=prot_H-paniculata_contig15120.3032.1|Name=mRNA_H-paniculata_contig15120.3032.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=337bp
MARANMITANMGRRYWVEAVRSSVYCLNRAPTRPHDGGTPYEKGHGETPK
LDHLRVFGCTVYVILFPAPPITPAVTRSRAQGEQAGGTKTEDRTSASEMP
PILSTHSLPAASANPFNVFSDGDDGENNGDTKMKDAEPSVKDAPSAGTAA
PASRGNTRKQSGTEAQRPRDRPPIRTRARARENREEDPGATARVAKMNGT
GNLTEVSKGKPKSAAEALASPETGKWRAAMEEEWGALVKNGTWKSEDLGR
LPAGRKAIRTNWIFKRKLKKDGSVARYKARLVAQGFPQVEGGEVFETSAP
GARMSTLCTVFSLAAEHDFELEDMDVDAAYLNAPVE*
back to top

mRNA from alignment at H-paniculata_contig15120:3641..6240-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15120.3032.1 ID=mRNA_H-paniculata_contig15120.3032.1|Name=mRNA_H-paniculata_contig15120.3032.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2600bp|location=Sequence derived from alignment at H-paniculata_contig15120:3641..6240- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTAAGTGCCGTCGGTCGGATCAGGGAGGAGAATATACTGGGAAGCCTTT TAGACAATTCTGCGCGGAAAATGGCATCAAGTGGGAGTTCTCTGCCGCCT ACACACCACAACAAAACGGTGTGGCGGAGCGCAGCTGGCGCAACATTTTC GAGATGGCAAGAGCCAACATGATCACCGCCAACATGGGTCGTCGATATTG GGTGGAAGCGGTGCGCTCGTCAGTGTACTGCCTAAATCGCGCCCCGACGC GACCGCACGATGGAGGAACGCCGTACGAAAAAGGGCACGGCGAGACACCA AAGTTGGACCACCTTCGCGTCTTCGGCTGCACGGTGTATGTTATGTTCCA GTCGCAGCAGGGACGCAAGCTCGACGACAAAACATGGGCGGGGTGTTTCT GGAGTACGACGAGGACAGCCTGAGTTATCGCGTATGTAACCCGGAAAACG ACAGCGTCCAGTTGAGCAGGAATGTGAGATTTGACGAAGAGGACTTCTTA ACAGGCCATCGCGTACAGCAGGAGCACGACGCGACGCGAAACATGGAAGA CTTTTTCCAGCACCACCAATCACGCCAGCGGTCACTCGATCCCGCGCCCA AGGCGAGCAAGCAGGCGGAACTAAGACGGAAGACCGGACGTCGGCGTCAG AAATGCCGCCGATATTATCGACACACTCGCTGCCAGCCGCCAGTGCAAAC CCATTCAATGTCTTCAGCGATGGCGATGATGGCGAAAATAACGGTGACAC CAAGATGAAGGATGCGGAGCCCTCAGTCAAAGACGCACCATCAGCAGGGA CGGCCGCACCCGCGTCGCGGGGGAACACCAGGAAGCAGTCAGGGACGGAG GCGCAGCGTCCGCGAGATCGGCCACCAATACGAACACGGGCGAGAGCCAG GGAAAACCGCGAAGAAGATCCAGGCGCTACCGCGCGCGTGGCAAAAATGA ATGGCACTGGCAACCTTACAGAGGTATCTAAGGGGAAGCCGAAATCCGCG GCAGAAGCATTAGCGAGTCCAGAGACGGGAAAATGGCGCGCGGCAATGGA GGAAGAATGGGGGGCATTGGTGAAAAATGGAACATGGAAAAGCGAAGACC TGGGGAGGTTACCCGCAGGGCGGAAGGCAATTCGTACGAACTGGATTTTC AAGCGGAAACTGAAGAAGGACGGCAGCGTGGCACGCTACAAAGCGCGACT GGTGGCTCAAGGTTTTCCACAGGTGGAGGGTGGAGAGGTCTTTGAAACCA GTGCCCCCGGAGCTCGCATGTCGACGTTATGTACTGTTTTTAGCCTGGCC GCCGAACATGATTTCGAATTAGAAGACATGGACGTAGATGCGGCGTATTT GAACGCCCCGGTAGAATAAGAGCTGTTTGTTAAGCTACCCCCCGAGTTTT CCCCTTTCTCCCGAGACATACCATTTGTGCGCCGCCTGCGTAAAAGCCTG TACGGCCTCAAGCAGAGCGGCCGAAACTGGAATAACACTCTTGACGATAT TCTTGTTGGGATAGGACTCGACCGTTCCACTACCGACTCATGCCTGGATT TTCCCACGACAAAGGGGGAGAGACAAACCTTCTGATGGCCGTGTGTGTTG ACGACCTGGTCATTGCCGGTCGCCGTGAGAAAGTAGACGAGTTCAAGCAT AACATAAGTCAGTGTTTTAGGATGAAAGACGTGGGTTCTCTCTCTCGCGT GTTGGGAATAGAAGTACGACGTGACCGCCCTAACGGTACCATAACCATCT CGCAGGGTAGCTACATCCGCGAGGTACTAAAAAGATACGGCTTTGACGAG CTTCGAGGAGTACCCACCCCTGTAGACTGAAAAATGAAGATTTCGGCACC CGGGTCGGCCGACAAGCCCTCCGAATCGAGGTCACTTGGAGCTGTACTGT CGGGCATAGGCGCAGGAGTACAAGAAAGCATCAGTGGGAGAAGTGGCAAT TCAACTGAATACAGAGGCATGGTAGGATCACTCATGTTCGCCTCGACAGG AACTAGACCTGGTATAGCATACGCGGTAAATCAAGCAGCACGTTGTATGG AGGATCCATGTCGAGAAGACTTCAGTACATGCAAGCGCATATTTCGTTAT CTCAGTACTGTGACTGACTTCGGCATTACGTTCGGCGGTAAGAGTAATGG TCACGGTCTGGAAGGACTCTTTGATGCCGATTGGGCGGGAGATGTCGAGG ACCGAAAGTCCACAACAGGATATGTTTTCAAGCTGAACGTGGTGCGAGAA GGTGGCGCTCTAGGAAGCAACAGCTAGTTACGTGGTCCAGTACAGAGGCA AAGTACGTTGCTGCAGGAGAAGCGGGAAAGGAGGCGGTATATCTTAGGGA GTTACTAGGATCGATAGGTTTCGGATGCAGGGGGAGCACGACATTGTTTG AGGACAATAAATGAGCTATTAACCTCAGTAAGGGATCTGACGCACACTGC AGGACAAAGCACATCGGAGTGCGCTGGCACGGAATTCGAGAGTGGATTCG GGAAGGCATATTGTCATTAAAATACGTGCAGGCCGGCGACCAACTTGCTG ACATTTTAACGAAAGGACTAAGAAGAGTACAGTTTCAGAGACTGAAAAAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig15120:3641..6240-

>mRNA_H-paniculata_contig15120.3032.1 ID=mRNA_H-paniculata_contig15120.3032.1|Name=mRNA_H-paniculata_contig15120.3032.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2022bp|location=Sequence derived from alignment at H-paniculata_contig15120:3641..6240- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAAGAGCCAACATGATCACCGCCAACATGGGTCGTCGATATTGGGT
GGAAGCGGTGCGCTCGTCAGTGTACTGCCTAAATCGCGCCCCGACGCGAC
CGCACGATGGAGGAACGCCGTACGAAAAAGGGCACGGCGAGACACCAAAG
TTGGACCACCTTCGCGTCTTCGGCTGCACGGTGTATGTTATATGGCAAGA
GCCAACATGATCACCGCCAACATGGGTCGTCGATATTGGGTGGAAGCGGT
GCGCTCGTCAGTGTACTGCCTAAATCGCGCCCCGACGCGACCGCACGATG
GAGGAACGCCGTACGAAAAAGGGCACGGCGAGACACCAAAGTTGGACCAC
CTTCGCGTCTTCGGCTGCACGGTGTATGTTATACTTTTTCCAGCACCACC
AATCACGCCAGCGGTCACTCGATCCCGCGCCCAAGGCGAGCAAGCAGGCG
GAACTAAGACGGAAGACCGGACGTCGGCGTCAGAAATGCCGCCGATATTA
TCGACACACTCGCTGCCAGCCGCCAGTGCAAACCCATTCAATGTCTTCAG
CGATGGCGATGATGGCGAAAATAACGGTGACACCAAGATGAAGGATGCGG
AGCCCTCAGTCAAAGACGCACCATCAGCAGGGACGGCCGCACCCGCGTCG
CGGGGGAACACCAGGAAGCAGTCAGGGACGGAGGCGCAGCGTCCGCGAGA
TCGGCCACCAATACGAACACGGGCGAGAGCCAGGGAAAACCGCGAAGAAG
ATCCAGGCGCTACCGCGCGCGTGGCAAAAATGAATGGCACTGGCAACCTT
ACAGAGGTATCTAAGGGGAAGCCGAAATCCGCGGCAGAAGCATTAGCGAG
TCCAGAGACGGGAAAATGGCGCGCGGCAATGGAGGAAGAATGGGGGGCAT
TGGTGAAAAATGGAACATGGAAAAGCGAAGACCTGGGGAGGTTACCCGCA
GGGCGGAAGGCAATTCGTACGAACTGGATTTTCAAGCGGAAACTGAAGAA
GGACGGCAGCGTGGCACGCTACAAAGCGCGACTGGTGGCTCAAGGTTTTC
CACAGGTGGAGGGTGGAGAGGTCTTTGAAACCAGTGCCCCCGGAGCTCGC
ATGTCGACGTTATGTACTGTTTTTAGCCTGGCCGCCGAACATGATTTCGA
ATTAGAAGACATGGACGTAGATGCGGCGTATTTGAACGCCCCGGTAGAAT
AAACTTTTTCCAGCACCACCAATCACGCCAGCGGTCACTCGATCCCGCGC
CCAAGGCGAGCAAGCAGGCGGAACTAAGACGGAAGACCGGACGTCGGCGT
CAGAAATGCCGCCGATATTATCGACACACTCGCTGCCAGCCGCCAGTGCA
AACCCATTCAATGTCTTCAGCGATGGCGATGATGGCGAAAATAACGGTGA
CACCAAGATGAAGGATGCGGAGCCCTCAGTCAAAGACGCACCATCAGCAG
GGACGGCCGCACCCGCGTCGCGGGGGAACACCAGGAAGCAGTCAGGGACG
GAGGCGCAGCGTCCGCGAGATCGGCCACCAATACGAACACGGGCGAGAGC
CAGGGAAAACCGCGAAGAAGATCCAGGCGCTACCGCGCGCGTGGCAAAAA
TGAATGGCACTGGCAACCTTACAGAGGTATCTAAGGGGAAGCCGAAATCC
GCGGCAGAAGCATTAGCGAGTCCAGAGACGGGAAAATGGCGCGCGGCAAT
GGAGGAAGAATGGGGGGCATTGGTGAAAAATGGAACATGGAAAAGCGAAG
ACCTGGGGAGGTTACCCGCAGGGCGGAAGGCAATTCGTACGAACTGGATT
TTCAAGCGGAAACTGAAGAAGGACGGCAGCGTGGCACGCTACAAAGCGCG
ACTGGTGGCTCAAGGTTTTCCACAGGTGGAGGGTGGAGAGGTCTTTGAAA
CCAGTGCCCCCGGAGCTCGCATGTCGACGTTATGTACTGTTTTTAGCCTG
GCCGCCGAACATGATTTCGAATTAGAAGACATGGACGTAGATGCGGCGTA
TTTGAACGCCCCGGTAGAATAA
back to top