mRNA_H-paniculata_contig15118.3031.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15118.3031.1
Unique NamemRNA_H-paniculata_contig15118.3031.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15118.3031.1 vs. uniprot
Match: D7FIR2_ECTSI (TPH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIR2_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 2.080e-18
Identity = 50/71 (70.42%), Postives = 58/71 (81.69%), Query Frame = 2 
Query:    2 GEEIQRNAKAAIEAEEEEARAKKLQCRVEMEKMLTANRNLHEIRAGRALEEQAYMEKCKQDRDVMDRAGRA 214
            G+E QR AKAAIEAEE+E RA KL+ R EMEKMLTAN++LH+ RA R  EE AYMEKC+Q RDV+DRA RA
Sbjct:  199 GDETQRAAKAAIEAEEDEKRALKLKNRAEMEKMLTANKDLHQRRAERISEELAYMEKCRQQRDVLDRAARA 269
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BLAST of mRNA_H-paniculata_contig15118.3031.1 vs. uniprot
Match: A0A6H5KEN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEN4_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 6.840e-14
Identity = 42/62 (67.74%), Postives = 49/62 (79.03%), Query Frame = 2 
Query:   29 AAIEAEEEEARAKKLQCRVEMEKMLTANRNLHEIRAGRALEEQAYMEKCKQDRDVMDRAGRA 214
            AAIEAEEEE RA KL+ R EMEKML  N++LH+ RA R  EE AYMEKC++ RDV+DRA RA
Sbjct:  234 AAIEAEEEEKRALKLKNRAEMEKMLAVNQDLHQRRAERISEELAYMEKCRKQRDVLDRAARA 295
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15118.3031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIR2_ECTSI2.080e-1870.42TPH domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KEN4_9PHAE6.840e-1467.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15118contigH-paniculata_contig15118:1150..4342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size216
Cds size216
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15118.3031.1prot_H-paniculata_contig15118.3031.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15118 1150..4342 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929212.5825589-CDS-H-paniculata_contig15118:1149..11771622929212.5825589-CDS-H-paniculata_contig15118:1149..1177Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15118 1150..1177 +
1691480772.5262785-CDS-H-paniculata_contig15118:1149..11771691480772.5262785-CDS-H-paniculata_contig15118:1149..1177Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15118 1150..1177 +
1622929212.5997903-CDS-H-paniculata_contig15118:3003..31351622929212.5997903-CDS-H-paniculata_contig15118:3003..3135Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15118 3004..3135 +
1691480772.536721-CDS-H-paniculata_contig15118:3003..31351691480772.536721-CDS-H-paniculata_contig15118:3003..3135Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15118 3004..3135 +
1622929212.6252255-CDS-H-paniculata_contig15118:4286..43421622929212.6252255-CDS-H-paniculata_contig15118:4286..4342Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15118 4287..4342 +
1691480772.5467532-CDS-H-paniculata_contig15118:4286..43421691480772.5467532-CDS-H-paniculata_contig15118:4286..4342Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15118 4287..4342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15118.3031.1

>prot_H-paniculata_contig15118.3031.1 ID=prot_H-paniculata_contig15118.3031.1|Name=mRNA_H-paniculata_contig15118.3031.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
RGGDTKECQGGYRGGGRRSKGEKAPVSGGDGENADGEPKPARDTGRSCLG
RTSVHGEVQARPGRNGQGGSR*
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mRNA from alignment at H-paniculata_contig15118:1150..4342+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15118.3031.1 ID=mRNA_H-paniculata_contig15118.3031.1|Name=mRNA_H-paniculata_contig15118.3031.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3193bp|location=Sequence derived from alignment at H-paniculata_contig15118:1150..4342+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGGAGGAGATACAAAGGAATGCCAAGGTACGCTTCTGTTGTCTTAATC
CCCAGGAGATGAGCCAAGGGGAAAACCTCAATCGTTACTATTACTTATAC
TTCTGTACGTATACAGGACGATGACGTCATATCTTGCGTATATGTATGTA
TGTATTATAACAGCATATTGGTGAAATGGGGACCCAACTTTGAGATGGGG
ACCCTGGGTTATGTTGGAAATAGGGTATTTCCTGAAAATCAATTTCGGAT
CTTCAGGATACAGCCTATTCCAATATAACCCAGGGCCCCCATCTCAAAGT
TGGGTCCCCATTTCACCTATATGCTGTTGTATGTATGTATGTATGTATGT
ATGTATATATGTATGTATGTGTGCGTGTATGTTAATTCCGTCGGATATTG
TTTTGAACGTTTGCGCAGAACAATTTTAGCTGCGCTATTCCGTTATCATC
GTACAATAGAGAGCGACTGCACGATGAAAACAGCAACTAGTCTTCAACAT
GAATGCTTGACTGGCGCATCTCAGGTCCCGAAGGGAGGGGAGTTCTTGGC
GATTGGAATCTCGTTCACAGTCGCCCTACATACATATATACTCTGTAGTA
TATATATAATACAGAGCCTACCCCTCTCAGCCAGAATATACATAACCTAT
GGTAGCAAAGCAGTCTAATTTCTGCTAGTTGACGAAATTTTTAAAAACGT
TGTTTGCATCGGATACTCGGCGACCTCAGTGTAACCCTCCATACAATCCT
ATGCTTAGAGTCCCACGCGTTGAGAGCTGCTATTGCGTCAACGTTCACGC
CTAAATTTGGAAATGTGCTCATACTGTGGATATTTCAGATGTTGCATATA
TTCAGACTCAGAGTGGTAGTGTGTCGTTGGATAGGGGATGGGTCCCTTTC
CGAGCCGTTCACCTGAGCGTGGTGACCCGAGCGTGGTGACCCGAGCGTTT
TGACTGCGTCAACATTATTGTATTGTTTGCTGTATGAAGGTTGATGTTTG
TTGTTCGATTGTCGTTGTCTTTTCTTTGTTGCTATGCTGTTGTTGCTGTT
GTTACTGTTGTTGTTACTGCAGCCAAGTTAGGTTCCCTGTATCGAATGGT
TCATGTAATATTTACTTTTTCAGCGAGTCGAGGAATTTCGAAGATGGGTC
GACTATAAACAGCATATTGGTGAAATGGGGACCCAACTTTGAGATGGGGA
CCCTGGGTTATATTGGAAATAGGCTGTATCCTGAAGATCCGAAATTTATT
TTTAGGAAAAGGCCTATTTCCAATATAGCCCAGGGTCTCCATCTCAAAGT
TGGGTCCCCATTTCACCAATATGCTGTTTATACCGTCGGCCAGAAGGTCA
CAATCTGCTTCGTCGCTTTGTTTAGGACGAAAATACTAGCCGGAAATAGC
CTCTTTTTGTGAGGAGTGGGGAAAAACGTCATATCACAGACAGGCAGGGT
TGCATCTTCTTGTTTGGGTATTCTCGCTTAGTTTACCATGATTTGGTTTC
GTGTTACTTATTTCTTGATTCATGTGTGATGTTCATGTAGACAATAGAAA
GCTCCCGTAGCAGATTTCCTAATATGTACGGTGTGCTTTCTTAATTCAGT
GTTGCTCAGTTACTTTGTTTGTATGTTTGGTTTTCTATTTCTGTTTATTT
AGTGGTTTGTTCATGTGCTTATTTTTTCTTTCAGGTTATTTGTATTTGTG
TGTTTTAGTTATATGCGTATCTGTTTATTTGTCGCTCCATTTAGGTGATA
ATATTTTTTAGTGTGTACATTCACTTGTATGCTTACCTTTTGTGATTTTT
TATTTAATCATATATATATATATATATATATATATTCTGCGAAAAACGAA
TAAGGCGGCTATCGAGGCGGAGGAAGAAGAAGCAAGGGCGAAAAAGCTCC
AGTGTCGGGTGGAGATGGAGAAAATGCTGACGGCGAACCGAAACCTGCAC
GAGATACGGGCCGGTCGTGCCTTGGAAGAACAAGCGGTGAGGTCAATCAG
TTCTTGTCACTGCTATCCGATGGATCAATCAGATCGTTCACGGCTCGGGC
CGCTCGTTTGCATCGATAAATCGTGTCATGTCTGATCGGTACATTTGTCC
ACAGCTGGTCCGTACGATCTGTGAGAATCCACTGTTCGAGTGTATTTCAC
TACCACTGAGCCATTGAAAGATTGGCGAGGGGGGAGTGTGTAATGACACG
GGATATTTCTCGCAGGCACGTTATGCTTTATGTGAGATTTTTTTATGTTC
TGCTTTCTTTCCTTCCTCCGGTGACAATGCTGTACACCATAAATCTCTAA
TAAAGCATTGAAATCATTCAGCCCCCGACAAATTCGAATACAAGACATGA
ATACACACGAGAACTTTGGAATGAGCACTGTATCTGTTTGAGTTGGGGAG
AATGTCCATGTGACGCCAGCAATATGCAGTGTACTCGATATACCATGGAG
CATCGAAAAGCTCGGGCAGATAGAACATTCAATCTGTGCAGTACCACCCG
GAAAACGAACAGGACCTGTATGTGTGACTGTTCGCCGGCTATACCACCAC
CTGGTGCCCATCTGTACGGTGACCATTCATAAACTTGTAAACGAGTAAAT
ACGTGTTTACGCAAGACAAACATGATCGCTCGAGTTAATTGCGAATGCTC
GATTCGTATTTGTCCGGGGGGTGAAGTCATTAGTCTGGAGGACAACGCTT
GGTCAATTTGTGATATACCAGATAAGTATGAACGAAATGCAGGTCGTTCG
TGTTTCTGGAGAGCTCTCTCTCTATATATACGGAGTATATAAATATCTCC
CACCGAATTTCCAGAGTGTCGAAAGAATGCAATGCCTTATTGCTTGAGAC
GTCAACGTGACGACGACGACGACGACGGTGGTGGTGGTGGTGATGATGAT
GATGATGATGATGATGATGATGATGATGATGATGATGATGATGATACTCT
CGAGGTGGTCTGCGTTTGTTACATGTGCCACCGGCGTAGCCCCGCGGCCT
ACTTCCTGGTATACACATACTATTTTGTGATATAAAAAGTTATTTGGTTG
CCCCAATTGTTTGCTCCATTCGGACACACCGCTAGGTATTAAGTAGCGCT
TGGTCTTACTTACTCCTTATTGTATGTCATGATCCAGTACATGGAGAAGT
GCAAGCAAGACCGGGACGTAATGGACAGGGCGGGTCGCGCTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig15118:1150..4342+

>mRNA_H-paniculata_contig15118.3031.1 ID=mRNA_H-paniculata_contig15118.3031.1|Name=mRNA_H-paniculata_contig15118.3031.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig15118:1150..4342+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGGAGGAGATACAAAGGAATGCCAAGCGGGGAGGAGATACAAAGGAAT
GCCAAGGCGGCTATCGAGGCGGAGGAAGAAGAAGCAAGGGCGAAAAAGCT
CCAGTGTCGGGTGGAGATGGAGAAAATGCTGACGGCGAACCGAAACCTGC
ACGAGATACGGGCCGGTCGTGCCTTGGAAGAACAAGCGGCGGCTATCGAG
GCGGAGGAAGAAGAAGCAAGGGCGAAAAAGCTCCAGTGTCGGGTGGAGAT
GGAGAAAATGCTGACGGCGAACCGAAACCTGCACGAGATACGGGCCGGTC
GTGCCTTGGAAGAACAAGCGTACATGGAGAAGTGCAAGCAAGACCGGGAC
GTAATGGACAGGGCGGGTCGCGCTAGTACATGGAGAAGTGCAAGCAAGAC
CGGGACGTAATGGACAGGGCGGGTCGCGCTAG
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