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Homology
BLAST of mRNA_H-paniculata_contig15099.3025.1 vs. uniprot
Match: D7FWC0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWC0_ECTSI) HSP 1 Score: 125 bits (315), Expect = 1.930e-28 Identity = 115/320 (35.94%), Postives = 147/320 (45.94%), Query Frame = 1
Query: 1 GSPPSSG-GFERLFGDSGVVALEAA---LGQGYMGGENKDAAESLFENTVKAFCCMAGGGAGEDRPPMQALHSRLLLDSYRLLAAPERS-----EWNRPPLSGFPSTFPEFSAAASXXXXXXXXXXSVASLACWPTMGMNSSFFETPF-----PLPQVPPS---PPHVSPHPAEWERHVRGCLALLRRRPLLCPEELLKRTGLVPCFAFGASV-GSPDLHGKPEGLEGSSGRHK---FHITEACLFIALDLTEEALLDESVGEAAAGLLRAWCTGTKAGSRGEGV---ALAGGDRWKEERGVMSPLIALLDETPSVCPDS 888
G P +G G RLF D G LEA +G G + + E L E+TV+A M G + P Q LH+ L D+Y LLA P RS + R P P+ SA+ S AS A M F PLP P S P SP +EWE V+GCL+ L RPLLCP+ LL+ TG P V G G+ ++ + GR+ F ++EACLF+ LD+ EEA+L GEAAAGLLRA+ T G ALAGG R E G S +A+L + C D+
Sbjct: 454 GFPVEAGAGTSRLFRDEGGFLLEACEEDMGLGLRSPKTEGPPELLLEHTVRALSAMLVPMGGGSQLPSQLLHACLQQDAYHLLAGPIRSGKASSQVGREPPFLIPNNDHRGSASLS------------ASAAPQQLMSPEKQQGRQEFRSGVQPLPLPPASLLLPKDHSPALSEWEERVQGCLSTLESRPLLCPDALLRATGAAPSLPSEVCVRGGMAREGRSVSVDAAKGRNNNRGFPLSEACLFVGLDVVEEAVLGRG-GEAAAGLLRAFRTVRNNGXXXXSYQDHALAGGGRGHAEGGEFSLFVAVLGQESHQCEDN 760
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-25_003810.1 |
| Exons | 5 |
| Model size | 939 |
| Cds size | 939 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig15099.3025.1 >prot_H-paniculata_contig15099.3025.1 ID=prot_H-paniculata_contig15099.3025.1|Name=mRNA_H-paniculata_contig15099.3025.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=313bp
GSPPSSGGFERLFGDSGVVALEAALGQGYMGGENKDAAESLFENTVKAFC
CMAGGGAGEDRPPMQALHSRLLLDSYRLLAAPERSEWNRPPLSGFPSTFP
EFSAAASSASSSSASPSSVASLACWPTMGMNSSFFETPFPLPQVPPSPPH
VSPHPAEWERHVRGCLALLRRRPLLCPEELLKRTGLVPCFAFGASVGSPD
LHGKPEGLEGSSGRHKFHITEACLFIALDLTEEALLDESVGEAAAGLLRA
WCTGTKAGSRGEGVALAGGDRWKEERGVMSPLIALLDETPSVCPDSSIGG
LVWALQDMSQKYG back to topmRNA from alignment at H-paniculata_contig15099:3416..5203- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig15099.3025.1 ID=mRNA_H-paniculata_contig15099.3025.1|Name=mRNA_H-paniculata_contig15099.3025.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1788bp|location=Sequence derived from alignment at H-paniculata_contig15099:3416..5203- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTAGCCCGCCAAGCAGCGGTGGTTTCGAGCGGCTGTTTGGGGACAGCGG
GGTAGTCGCCCTCGAAGCGGCATTGGGACAGGGGTATATGGGGGGTGAGA
ACAAGGATGCGGCTGAGAGCCTCTTCGAGAACACGGTGAAGGCGTTTTGT
TGCATGGCCGGAGGTGGAGCAGGGGAAGATCGCCCTCCGATGCAGGTATG
CAGTGCAGGAACCTTGCGGAAAGAGTTTGGAGCATGTAAACACAAGAACA
AAAAGATGAGAGTTGTCTATTGTGTGTAGGCGGATACATACATCGTCGTG
ACTTTTCTGCTGTGTACTGTAATGTAGCTAGCTTAAAAAAAATCGACGAT
GGGATAAGGAAAGTACGTGCTCCGCTCGTCGTAGACAAAAGTGACATGGT
AGCGGGCAGAGCTTGAAAGGACCCTTCCGCTTTTCTACGTGGCTAACGTT
CTTTGTGCGAATTTCGGGTTGCCTTTCTTTCCCCTGTCGCACTTGTCGGA
TCTGTCCCTTGGCTTTATTCTCCGTGCTCTTTGAAGGCTCTACATTCCCG
CTTGCTGCTGGACTCCTACCGTCTACTGGCCGCTCCAGAGCGTAGCGAGT
GGAACCGTCCGCCGCTGAGCGGATTCCCGTCAACATTCCCGGAATTTTCC
GGTGCGACGACCGATTTACCGCCGCCCAAGGGATCTGGATCTTCAATGCC
TTGTTGTCACAAAGGGAAAAAAGTGGACCACGCAAGACAGGGCGAGGGGA
CGTCGTCAGCAGCGGCGTCATCGGCATCATCATCATCGGCATCACCATCA
TCGGTAGCATCGTTGGCATGCTGGCCTACTATGGGGATGAACTCATCATT
TTTCGAGACCCCGTTTCCATTACCGCAGGTCCCGCCCTCACCACCCCACG
TATCACCCCACCCAGCCGAATGGGAAAGGCACGTACGGGGCTGCCTGGCG
CTCCTTCGACGGCGGCCCTTGCTCTGTCCAGAAGAACTGCTTAAAAGAAC
CGGATTGGTGCCATGTTTTGCGTTCGGAGCGAGTGTCGGCTCACCGGACC
TGCACGGAAAACGTGCTGCCGGCTTTGAGCCCTGGCTATCGGGGGGGGGA
GCAGGGTGGGGAGGAGTGATTGATAGTCTAGCCGAAGGCTTGGAGGGATC
CAGTGGTAGACACAAGTTTCATATCACAGAGGCTTGTTTGTTTATAGCGT
TAGATTTGACAGAGGAAGCTCTATTGGATGAAAGTGTAGGGGAAGCTGCA
GCTGGGTTGCTGCGAGCGTGGTGTACCGGGACCAAGGCGGGAAGCAGAGG
TGAAGGTGTGGCGCTTGCTGGTGGAGACAGGTGGAAGGAGGAACGCGGCG
TGATGTCACCTTTGATTGCTCTGTTGGATGAGGTGCAGAATGTCTATTGG
TTGGAAACGTTTGTCACTGCCTTATGTGAAGCGTTTTTGTTTTTTTTTGG
GGGGGGGGGTCTGGCCGTCGCTGCCTTGCGTTATGGTGGGGTACTCATCT
CTCTGAGTAAACACGAACGACCCATGTACAGAGTGTATATTGTGCCCACC
ATATACTTGAAGGGCTTGTTCCGACTCGTGTGCCATATGTTGCTGCAGTA
TTCCTGTTCTTGTCTGGGCTTGATTTTTCGAAATGCCTCATGCTATTGTA
TTACAGGTATTCATGACTGATTGCACGTTGCTGCCTTCCCTCTTGCCCTC
TGGGTGCTCTCAGACGCCTTCGGTGTGCCCTGATAGCTCCATCGGGGGGT
TGGTTTGGGCCCTGCAGGACATGAGTCAGAAATATGGC back to topCoding sequence (CDS) from alignment at H-paniculata_contig15099:3416..5203- >mRNA_H-paniculata_contig15099.3025.1 ID=mRNA_H-paniculata_contig15099.3025.1|Name=mRNA_H-paniculata_contig15099.3025.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1878bp|location=Sequence derived from alignment at H-paniculata_contig15099:3416..5203- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTAGCCCGCCAAGCAGCGGTGGTTTCGAGCGGCTGTTTGGGGACAGCGG
GGTAGTCGCCCTCGAAGCGGCATTGGGACAGGGGTATATGGGGGGTGAGA
ACAAGGATGCGGCTGAGAGCCTCTTCGAGAACACGGTGAAGGCGTTTTGT
TGCATGGCCGGAGGTGGAGCAGGGGAAGATCGCCCTCCGATGCAGGGTAG
CCCGCCAAGCAGCGGTGGTTTCGAGCGGCTGTTTGGGGACAGCGGGGTAG
TCGCCCTCGAAGCGGCATTGGGACAGGGGTATATGGGGGGTGAGAACAAG
GATGCGGCTGAGAGCCTCTTCGAGAACACGGTGAAGGCGTTTTGTTGCAT
GGCCGGAGGTGGAGCAGGGGAAGATCGCCCTCCGATGCAGGCTCTACATT
CCCGCTTGCTGCTGGACTCCTACCGTCTACTGGCCGCTCCAGAGCGTAGC
GAGTGGAACCGTCCGCCGCTGAGCGGATTCCCGTCAACATTCCCGGAATT
TTCCGGCTCTACATTCCCGCTTGCTGCTGGACTCCTACCGTCTACTGGCC
GCTCCAGAGCGTAGCGAGTGGAACCGTCCGCCGCTGAGCGGATTCCCGTC
AACATTCCCGGAATTTTCCGCAGCGGCGTCATCGGCATCATCATCATCGG
CATCACCATCATCGGTAGCATCGTTGGCATGCTGGCCTACTATGGGGATG
AACTCATCATTTTTCGAGACCCCGTTTCCATTACCGCAGGTCCCGCCCTC
ACCACCCCACGTATCACCCCACCCAGCCGAATGGGAAAGGCACGTACGGG
GCTGCCTGGCGCTCCTTCGACGGCGGCCCTTGCTCTGTCCAGAAGAACTG
CTTAAAAGAACCGGATTGGTGCCATGTTTTGCGTTCGGAGCGAGTGTCGG
CTCACCGGACCTGCACGGAAAACCAGCGGCGTCATCGGCATCATCATCAT
CGGCATCACCATCATCGGTAGCATCGTTGGCATGCTGGCCTACTATGGGG
ATGAACTCATCATTTTTCGAGACCCCGTTTCCATTACCGCAGGTCCCGCC
CTCACCACCCCACGTATCACCCCACCCAGCCGAATGGGAAAGGCACGTAC
GGGGCTGCCTGGCGCTCCTTCGACGGCGGCCCTTGCTCTGTCCAGAAGAA
CTGCTTAAAAGAACCGGATTGGTGCCATGTTTTGCGTTCGGAGCGAGTGT
CGGCTCACCGGACCTGCACGGAAAACCCGAAGGCTTGGAGGGATCCAGTG
GTAGACACAAGTTTCATATCACAGAGGCTTGTTTGTTTATAGCGTTAGAT
TTGACAGAGGAAGCTCTATTGGATGAAAGTGTAGGGGAAGCTGCAGCTGG
GTTGCTGCGAGCGTGGTGTACCGGGACCAAGGCGGGAAGCAGAGGTGAAG
GTGTGGCGCTTGCTGGTGGAGACAGGTGGAAGGAGGAACGCGGCGTGATG
TCACCTTTGATTGCTCTGTTGGATGAGCCGAAGGCTTGGAGGGATCCAGT
GGTAGACACAAGTTTCATATCACAGAGGCTTGTTTGTTTATAGCGTTAGA
TTTGACAGAGGAAGCTCTATTGGATGAAAGTGTAGGGGAAGCTGCAGCTG
GGTTGCTGCGAGCGTGGTGTACCGGGACCAAGGCGGGAAGCAGAGGTGAA
GGTGTGGCGCTTGCTGGTGGAGACAGGTGGAAGGAGGAACGCGGCGTGAT
GTCACCTTTGATTGCTCTGTTGGATGAGACGCCTTCGGTGTGCCCTGATA
GCTCCATCGGGGGGTTGGTTTGGGCCCTGCAGGACATGAGTCAGAAATAT
GGCACGCCTTCGGTGTGCCCTGATAGCTCCATCGGGGGGTTGGTTTGGGC
CCTGCAGGACATGAGTCAGAAATATGGC back to top
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