mRNA_H-paniculata_contig15096.3023.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15096.3023.1
Unique NamemRNA_H-paniculata_contig15096.3023.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15096.3023.1 vs. uniprot
Match: A0A6H5JG00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG00_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 4.770e-9
Identity = 32/55 (58.18%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    4 VLARLSASVLCKVGIIHRQIGQVDEAINSLTQALDLDPGSRLALQGAGEAFLAQV 168
            V A     V  +VG I RQIGQVDEA++S   AL LDP S LAL+G+GEA+LAQ 
Sbjct:  173 VEAAARVRVRTQVGTIQRQIGQVDEAVSSFNDALALDPESILALEGSGEAYLAQA 227
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BLAST of mRNA_H-paniculata_contig15096.3023.1 vs. uniprot
Match: D7G059_ECTSI (Similar to Tetratricopeptide repeat protein 37 (TPR repeat protein 37) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G059_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 2.280e-8
Identity = 31/55 (56.36%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:    4 VLARLSASVLCKVGIIHRQIGQVDEAINSLTQALDLDPGSRLALQGAGEAFLAQV 168
            V A     V  +VG I RQIGQVDEA++S   AL  DP S LAL+G+GEA+LAQ 
Sbjct:  707 VEAAARVRVRTQVGTIQRQIGQVDEAVSSFNDALTRDPESILALEGSGEAYLAQA 761
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15096.3023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JG00_9PHAE4.770e-958.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G059_ECTSI2.280e-856.36Similar to Tetratricopeptide repeat protein 37 (TP... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15096contigH-paniculata_contig15096:5151..5354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929210.8134634-CDS-H-paniculata_contig15096:5150..53541622929210.8134634-CDS-H-paniculata_contig15096:5150..5354Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15096 5151..5354 +
1691480771.7420564-CDS-H-paniculata_contig15096:5150..53541691480771.7420564-CDS-H-paniculata_contig15096:5150..5354Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15096 5151..5354 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15096.3023.1prot_H-paniculata_contig15096.3023.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15096 5151..5354 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15096.3023.1

>prot_H-paniculata_contig15096.3023.1 ID=prot_H-paniculata_contig15096.3023.1|Name=mRNA_H-paniculata_contig15096.3023.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
RVLARLSASVLCKVGIIHRQIGQVDEAINSLTQALDLDPGSRLALQGAGE
AFLAQVRLPFCARHVSD*
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mRNA from alignment at H-paniculata_contig15096:5151..5354+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15096.3023.1 ID=mRNA_H-paniculata_contig15096.3023.1|Name=mRNA_H-paniculata_contig15096.3023.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=204bp|location=Sequence derived from alignment at H-paniculata_contig15096:5151..5354+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTGTGCTTGCTCGTCTCTCTGCTTCCGTCTTGTGCAAGGTGGGCATCAT
CCACAGGCAGATCGGACAGGTAGACGAAGCCATTAACAGCTTGACGCAAG
CCTTGGATCTAGATCCTGGCAGCAGGTTGGCTCTCCAAGGTGCTGGGGAG
GCTTTCCTCGCGCAGGTGCGACTGCCATTTTGCGCTCGTCATGTTTCGGA
CTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig15096:5151..5354+

>mRNA_H-paniculata_contig15096.3023.1 ID=mRNA_H-paniculata_contig15096.3023.1|Name=mRNA_H-paniculata_contig15096.3023.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig15096:5151..5354+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTGTGCTTGCTCGTCTCTCTGCTTCCGTCTTGTGCAAGGTGGGCATCAT
CCACAGGCAGATCGGACAGGTAGACGAAGCCATTAACAGCTTGACGCAAG
CCTTGGATCTAGATCCTGGCAGCAGGTTGGCTCTCCAAGGTGCTGGGGAG
GCTTTCCTCGCGCAGGTGCGACTGCCATTTTGCGCTCGTCATGTTTCGGA
CTAGCGTGTGCTTGCTCGTCTCTCTGCTTCCGTCTTGTGCAAGGTGGGCA
TCATCCACAGGCAGATCGGACAGGTAGACGAAGCCATTAACAGCTTGACG
CAAGCCTTGGATCTAGATCCTGGCAGCAGGTTGGCTCTCCAAGGTGCTGG
GGAGGCTTTCCTCGCGCAGGTGCGACTGCCATTTTGCGCTCGTCATGTTT
CGGACTAG
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