mRNA_H-paniculata_contig1509.3019.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1509.3019.1
Unique NamemRNA_H-paniculata_contig1509.3019.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1509.3019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1509contigH-paniculata_contig1509:248..2333 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size275
Cds size273
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1509.3019.1prot_H-paniculata_contig1509.3019.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1509 248..2333 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929210.450164-CDS-H-paniculata_contig1509:247..3781622929210.450164-CDS-H-paniculata_contig1509:247..378Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1509 248..378 +
1691480771.6239429-CDS-H-paniculata_contig1509:247..3781691480771.6239429-CDS-H-paniculata_contig1509:247..378Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1509 248..378 +
1622929210.4675474-CDS-H-paniculata_contig1509:1072..11661622929210.4675474-CDS-H-paniculata_contig1509:1072..1166Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1509 1073..1166 +
1691480771.6348045-CDS-H-paniculata_contig1509:1072..11661691480771.6348045-CDS-H-paniculata_contig1509:1072..1166Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1509 1073..1166 +
1622929210.483346-CDS-H-paniculata_contig1509:2285..23331622929210.483346-CDS-H-paniculata_contig1509:2285..2333Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1509 2286..2333 +
1691480771.644219-CDS-H-paniculata_contig1509:2285..23331691480771.644219-CDS-H-paniculata_contig1509:2285..2333Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1509 2286..2333 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1509.3019.1

>prot_H-paniculata_contig1509.3019.1 ID=prot_H-paniculata_contig1509.3019.1|Name=mRNA_H-paniculata_contig1509.3019.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
GLCAHEARRLEEAELYFRRVLEIEEAKPNPDDHETALTLYELGRCLRDRG
RPKEAQSYVRRSLAIMESQPGHDIQVADTLHVMGRCVQQAD
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mRNA from alignment at H-paniculata_contig1509:248..2333+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1509.3019.1 ID=mRNA_H-paniculata_contig1509.3019.1|Name=mRNA_H-paniculata_contig1509.3019.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2086bp|location=Sequence derived from alignment at H-paniculata_contig1509:248..2333+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGACTCTGTGCCCATGAGGCAAGGCGCCTAGAAGAGGCGGAGCTGTACTT
TCGCAGGGTTTTGGAGATTGAGGAGGCTAAGCCAAATCCTGATGATCATG
AGACGGCACTTACTTTATATGAACTGGGAAGGTGAGTCGAAGGGGCTTCA
ATGAATTATAAGAAGAACCGGAGATATTGCGTCGTTCAATAAGTGTTAGA
GACAAAAATACTTGGCGTGTTTCGTATCTACAATATAATATATACGAAGT
ATATACTACATTGAGACATCGTATTCAATAATCAAAGGAGACGTTTTTCA
AGTTTGAAGTATCTTTTTTTACACCTCTAAATTCCGATTTTGCAAGCTTT
TCTCGATAATGTCGCCAGAATTGATTATTTTGCCAGAGGTCATGAGCGAA
GGTTTTTTGCCCTGTCCAGACGTGGCCAATGGAAAAACCCGCGTCACTTT
CTCGTTGTGGTTCTCAAGATATTGCACTTCATTAAACACCATATGTCCCA
CTGTATGTAGTACATCTGTACGATAAGTCGTTCGTATAGGGATATATATT
TGTAGAGTTCGCTGTTGAACGAATGGCTCAGTTGACCTGTATATACTCCA
AACATAGTTGTTTTCGTATGCAGCAAGATTATGGAGACTGTTGTCGACAA
AATGAAGGTTTCAGCAACGTCACCAATGTGGACCAGTTGATTTTTCTCAA
GTCTGCCGCTTTTAGTTTACGTTGAAGCTTGACTTTACGGGCAGAGTGTG
TGGTAATAACAAGCCTTTGGTAAAACCGAAAAATATCATGTATCTGCTTG
CCTATTCACCACCCCGCTTCTGCAGGTGCCTTCGGGACAGAGGGCGACCG
AAAGAGGCTCAGAGCTACGTGAGACGATCCCTGGCGATAATGGAAAGTCA
ACCAGGGCACGATATACAGGTGCCACCTACTCATCTAACTAGATTCTCGT
ACTCTGCAGCAACAGTTGATGAGATATATGGGCTAGCTGTACTTCAATCC
GAGATGTGACTCTTACAAACCTATCATTTTCAAGGTCGAAAAAGCGATCG
GTTGCTTGACAGAGCGTATCCACCGAGATCCGAAATCGATGCTTCGGCAG
AGGGCGCATTTCCGTGCCATAATCCAGAGCGCGGTGTTCACTTTTCCAGA
GTCGACCCAAATAGTAGTCTTCAGAGCTCGTGAATTGTTGCAGCTCGTGA
ATCCGTTCCGTCACACTCGCCCACGAGATTTGCTGATGGCGTACTCGAAC
GTATCCATGGCGTCATTGGATATAGGAGTCGAATGATACTACCATTCCCT
CTACATGGATTGCACACGAATCTTCGCGTGCCGTAGCGCCGTACAATCTC
ACAAGCGGGCATTAATGCCCATGGCGTGTGTATTCGAGGGCGACAAGTGC
GTCGATCGACGACTTATTGGCGTTTATCTCGCCCAAGGCAAGCAGTCCAA
ATGATTGCACCATAAAATGTTTTTTGGTGGGATTTGCGTTAACTTGTAGA
CAGCAAACCACAATCTTATCAACTCAGCCGTTTTTGCCTCCTCGGATTTG
ATATATTTCACTGGCGTGGTATATCGACGTTCAACCGCTTACAATGAGTT
GCCCTCGTGGTGACACTATCGCCGCGGGTTATGTCGGCGGACAGATGGTA
AAATCTGTGCACCACCGTAGACCAGCTGTCCATGTACCTCCTCATTTCTT
TTGGTTGCTGTACGAGAGTCGTGCCTCTCGTTCTTCCCTCTTGCGTTGAA
AATTCATGGAAGTGAGCCGACCAGCCCGGTGTAACATAGACACGAGCTAC
AGTGGATCATCACTCAGTCAAATCACGTTGGCCACGAAGTAGGGACTTCA
CAAACAGAATAACACAGCAATCAACAGCACCAGGATACGCGGCAAAATAT
GCTCTCGGCTATAGAATTACATATACCTACCGGAGTGTCAGCGTACATGC
CTGCCTGGACGTTTGCGTCGACCCAGATCGCCCCTGCCCCCCCCCCCCTA
CAATCAATGGACGACGGGGATGAACGAACCGTGATTAGGTGGCAGACACA
CTGCACGTAATGGGTCGATGCGTTCAGCAAGCGGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig1509:248..2333+

>mRNA_H-paniculata_contig1509.3019.1 ID=mRNA_H-paniculata_contig1509.3019.1|Name=mRNA_H-paniculata_contig1509.3019.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig1509:248..2333+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGACTCTGTGCCCATGAGGCAAGGCGCCTAGAAGAGGCGGAGCTGTACTT
TCGCAGGGTTTTGGAGATTGAGGAGGCTAAGCCAAATCCTGATGATCATG
AGACGGCACTTACTTTATATGAACTGGGAAGGGACTCTGTGCCCATGAGG
CAAGGCGCCTAGAAGAGGCGGAGCTGTACTTTCGCAGGGTTTTGGAGATT
GAGGAGGCTAAGCCAAATCCTGATGATCATGAGACGGCACTTACTTTATA
TGAACTGGGAAGGTGCCTTCGGGACAGAGGGCGACCGAAAGAGGCTCAGA
GCTACGTGAGACGATCCCTGGCGATAATGGAAAGTCAACCAGGGCACGAT
ATACAGGTGCCTTCGGGACAGAGGGCGACCGAAAGAGGCTCAGAGCTACG
TGAGACGATCCCTGGCGATAATGGAAAGTCAACCAGGGCACGATATACAG
GTGGCAGACACACTGCACGTAATGGGTCGATGCGTTCAGCAAGCGGACGT
GGCAGACACACTGCACGTAATGGGTCGATGCGTTCAGCAAGCGGAC
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