mRNA_H-paniculata_contig15085.3017.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15085.3017.1
Unique NamemRNA_H-paniculata_contig15085.3017.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15085.3017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15085contigH-paniculata_contig15085:5894..6415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size522
Cds size510
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929210.261076-UTR-H-paniculata_contig15085:5893..59051622929210.261076-UTR-H-paniculata_contig15085:5893..5905Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15085 5894..5905 +
1691480771.5336256-UTR-H-paniculata_contig15085:5893..59051691480771.5336256-UTR-H-paniculata_contig15085:5893..5905Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15085 5894..5905 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929210.2735772-CDS-H-paniculata_contig15085:5905..64151622929210.2735772-CDS-H-paniculata_contig15085:5905..6415Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15085 5906..6415 +
1691480771.5438752-CDS-H-paniculata_contig15085:5905..64151691480771.5438752-CDS-H-paniculata_contig15085:5905..6415Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15085 5906..6415 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15085.3017.1prot_H-paniculata_contig15085.3017.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15085 5906..6415 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15085.3017.1

>prot_H-paniculata_contig15085.3017.1 ID=prot_H-paniculata_contig15085.3017.1|Name=mRNA_H-paniculata_contig15085.3017.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=170bp
MGESGLFGRVDIVQFSGDPEKFALWQARFGALARKNRLIRPLMEERSERE
AEDSQGTWDEINAKLFDILMLSVDGPAEAIVCQFAGRDISPGDGRSAYNA
LVEKNEERTQMRAVDLHADLANMTVETPDQDPDKFILAVENIVYNLAMLN
EPVTDSRERSIILAGLTDDY
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mRNA from alignment at H-paniculata_contig15085:5894..6415+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15085.3017.1 ID=mRNA_H-paniculata_contig15085.3017.1|Name=mRNA_H-paniculata_contig15085.3017.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=522bp|location=Sequence derived from alignment at H-paniculata_contig15085:5894..6415+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTGCAGCCAATATGGGAGAGTCCGGCTTATTCGGGAGAGTCGATATCGT
ACAATTCAGCGGAGATCCTGAGAAGTTCGCACTATGGCAAGCGCGTTTCG
GAGCGCTAGCAAGAAAAAACCGGCTGATTAGACCGCTAATGGAAGAGCGG
TCCGAACGAGAGGCAGAAGACAGTCAGGGCACATGGGACGAAATAAACGC
GAAGCTGTTCGACATACTGATGCTGTCTGTGGATGGCCCAGCAGAAGCCA
TAGTCTGTCAATTCGCGGGCCGAGACATATCCCCAGGAGATGGGCGAAGT
GCTTACAACGCGTTGGTGGAAAAGAATGAAGAGAGAACACAAATGCGGGC
AGTAGATCTACACGCCGACCTCGCTAACATGACCGTCGAGACGCCAGACC
AAGACCCGGATAAGTTCATTCTTGCGGTCGAAAACATAGTTTACAATCTG
GCCATGCTTAATGAGCCGGTGACCGACTCCCGCGAACGCAGCATCATCCT
CGCCGGACTGACGGACGATTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig15085:5894..6415+

>mRNA_H-paniculata_contig15085.3017.1 ID=mRNA_H-paniculata_contig15085.3017.1|Name=mRNA_H-paniculata_contig15085.3017.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1020bp|location=Sequence derived from alignment at H-paniculata_contig15085:5894..6415+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAGAGTCCGGCTTATTCGGGAGAGTCGATATCGTACAATTCAGCGG
AGATCCTGAGAAGTTCGCACTATGGCAAGCGCGTTTCGGAGCGCTAGCAA
GAAAAAACCGGCTGATTAGACCGCTAATGGAAGAGCGGTCCGAACGAGAG
GCAGAAGACAGTCAGGGCACATGGGACGAAATAAACGCGAAGCTGTTCGA
CATACTGATGCTGTCTGTGGATGGCCCAGCAGAAGCCATAGTCTGTCAAT
TCGCGGGCCGAGACATATCCCCAGGAGATGGGCGAAGTGCTTACAACGCG
TTGGTGGAAAAGAATGAAGAGAGAACACAAATGCGGGCAGTAGATCTACA
CGCCGACCTCGCTAACATGACCGTCGAGACGCCAGACCAAGACCCGGATA
AGTTCATTCTTGCGGTCGAAAACATAGTTTACAATCTGGCCATGCTTAAT
GAGCCGGTGACCGACTCCCGCGAACGCAGCATCATCCTCGCCGGACTGAC
GGACGATTACATGGGAGAGTCCGGCTTATTCGGGAGAGTCGATATCGTAC
AATTCAGCGGAGATCCTGAGAAGTTCGCACTATGGCAAGCGCGTTTCGGA
GCGCTAGCAAGAAAAAACCGGCTGATTAGACCGCTAATGGAAGAGCGGTC
CGAACGAGAGGCAGAAGACAGTCAGGGCACATGGGACGAAATAAACGCGA
AGCTGTTCGACATACTGATGCTGTCTGTGGATGGCCCAGCAGAAGCCATA
GTCTGTCAATTCGCGGGCCGAGACATATCCCCAGGAGATGGGCGAAGTGC
TTACAACGCGTTGGTGGAAAAGAATGAAGAGAGAACACAAATGCGGGCAG
TAGATCTACACGCCGACCTCGCTAACATGACCGTCGAGACGCCAGACCAA
GACCCGGATAAGTTCATTCTTGCGGTCGAAAACATAGTTTACAATCTGGC
CATGCTTAATGAGCCGGTGACCGACTCCCGCGAACGCAGCATCATCCTCG
CCGGACTGACGGACGATTAC
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