mRNA_H-paniculata_contig15070.3010.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15070.3010.1
Unique NamemRNA_H-paniculata_contig15070.3010.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15070.3010.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15070contigH-paniculata_contig15070:1913..5631 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size625
Cds size621
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15070.3010.1prot_H-paniculata_contig15070.3010.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15070 1913..5629 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929209.0914376-CDS-H-paniculata_contig15070:1912..21561622929209.0914376-CDS-H-paniculata_contig15070:1912..2156Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15070 1913..2156 +
1691480771.1602514-CDS-H-paniculata_contig15070:1912..21561691480771.1602514-CDS-H-paniculata_contig15070:1912..2156Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15070 1913..2156 +
1622929209.1877487-CDS-H-paniculata_contig15070:3183..33221622929209.1877487-CDS-H-paniculata_contig15070:3183..3322Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15070 3184..3322 +
1691480771.1733456-CDS-H-paniculata_contig15070:3183..33221691480771.1733456-CDS-H-paniculata_contig15070:3183..3322Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15070 3184..3322 +
1622929209.2087522-CDS-H-paniculata_contig15070:5391..56291622929209.2087522-CDS-H-paniculata_contig15070:5391..5629Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15070 5392..5629 +
1691480771.1808257-CDS-H-paniculata_contig15070:5391..56291691480771.1808257-CDS-H-paniculata_contig15070:5391..5629Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15070 5392..5629 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15070.3010.1

>prot_H-paniculata_contig15070.3010.1 ID=prot_H-paniculata_contig15070.3010.1|Name=mRNA_H-paniculata_contig15070.3010.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=207bp
SRHYQQQQPRSSTTSSNNNNQPLPTIQLSPGGFTPTVTTSATITTMTSNM
ALLPTDHPTSGSSRCSSSQSNVTNIAHKPSTGGDVPDISHTLAEQAKLAV
AAEIAKAEWDAREKRALRERKEAIEAARICWENRVGGGGPSRHSKTRNRS
SSAGSTRQPNPNSTDTSNSSSSSKSKIALSARESKSRGHSLGSSRSPTPP
QRGRAPV
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mRNA from alignment at H-paniculata_contig15070:1913..5631+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15070.3010.1 ID=mRNA_H-paniculata_contig15070.3010.1|Name=mRNA_H-paniculata_contig15070.3010.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3719bp|location=Sequence derived from alignment at H-paniculata_contig15070:1913..5631+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCCGACACTACCAACAGCAACAACCACGAAGTAGTACTACCAGCAGCAA
TAACAACAATCAGCCACTCCCAACGATCCAACTATCACCTGGCGGTTTCA
CACCAACCGTCACAACGTCAGCCACAATAACAACGATGACATCCAACATG
GCGTTACTCCCCACCGACCATCCTACCTCTGGCTCTTCCCGGTGTTCCTC
ATCCCAGAGCAACGTTACCAACATCGCACACAAACCAAGTACAGGTAATT
CCCGTCACGAACCTGTTGATGACCTTGTGGAGACGTTTCAAAGAGATTTT
TGGCAACAATGGGAGTTTTTCGCCAAAAAAACTCCGAATCTTCTACTGAA
GTATGATCCACCTTGTAAAAAAATAACTCGATTTTGCCGACATTGTCCTA
GCGTGTTCCTGAGAAAGGAAAAAGGAGAAATAATGGAAAAACGGAATAAA
GGGAGGAACCGGTATCGTCAGTAACGATCCGGAGGAGCCTATTATTCTAT
CAAATGACGAAACAAGCCCACTATTTGTCCATCCTCACTCTATGTTGACT
CTAAGAAAAGAAGAGAAGACGATTCAGCCAATCGTGGAGACCAAAACATC
TATTTTGGAGCTGGGAAAGTACAACCGGATATCTGTCTATAAAGTAAACC
CGGTAGCTAGGCACTTCTGTTGGCACATTATCATTATTCTCCACTGGTCG
CTGGGAGATGTATCTTCTGACCATTAAGATATCCGGTTGGGTCCGTGAGG
CATTCAGTAGAAGCAGGCCCAATTTTGTTCAAGGAGTTGCCCGGCACCGA
GGTTGAATCGACTTTGAAACTAGACTGAGATAAACACCTGTTTTCCTTCC
TCCGTGCGCGCGTTGGAGAGCGATTGGCCCTCGGAAACCGTGATGATAGG
AACGAAACTCCATCCTCTCGAGGATGCAATGTCAATGGTTTAACGACTAC
GGCATTAAAAATATGAGTACATCCCCCCCTCCCCATGGTGTGCCCATCAA
CTTTGAGATATTTTGTGTGCGCACCAAGGACTTTGGCTTACATGCGGCGG
AGAACAGTTTCTCATTTGCTAGATAATTATATAAATGAAAAAAAAAAGGT
GTAGTGTGTCTCGAGGTTTTATTCGGCACTTGCTCACCTTTGTTCTACGG
GGTTTGGCTTGAAACTGGTGCCGCAATAATGAAAAGATTTTTCATTTGTA
TGATGACAATTTTGAAATTTGATGTTTATTGACTCTGAGTCATTATCCGC
CACTGTATTTAATGTACCTAGGTGGCGATGTCCCTGACATAAGTCATACT
CTAGCTGAGCAGGCGAAGCTGGCGGTGGCGGCGGAAATTGCTAAGGCGGA
GTGGGACGCGCGAGAAAAGCGTGCTTTGCGGGAACGGAAAGAGGCCATAG
AGGCCGCGAGGTGGGGTATCCTTCGTACATTCGGAACTCTGAACTCGATT
GATTTCTGAAAAATGAATCTTCGTGCGAGCGTAGCCAGTCCCTACTGCGA
TCGCAGCGAACCATTGTGCGTAGGTCGTTGATTGGGGACTAAGCACGAAC
TGCAAGGGCGTAGTAGCTGTGGTCATAGTCGACTTTGGTCATACTATGCT
ATGGTCATTCTCACTGCTAGTGCTGTGATTCTTTTAAGAGATTGACACTC
AGCTAACGTCGGAATATCATGGACGTGATGGAAACAGAGGAAGCGAGGTT
GATTAAGTGTTACATTGAAAACAAACAAAAAGGAAATGTGTTGTAGTAGT
TAAATGTCCAATAGAAAAAGGGTTGAGTCATCAGAGTTAAACTTGTTGCA
AATATGTTCGTGATCTATGTAAAGCCGTACACGTTGTTATTCTTACATTT
GTTTGGTATTCGGCTCAACTTATGACTTGTTACACCAGCACAAAACCATC
ACGCCTAAGGCACACAGACCGCCCTCACAAGAAAACGTTGTCAATGATCT
GTATGTTTTGGAATTAATTCCCCCACAATTTTGTCAAAGCATCGATCATT
GCGCAAGATGCTCAACCATAAAGGAACACTAATCACATGAAGAAACCCGC
ATAATCGGGCCATGTAACGGTTCGCTACGATGCCCCACCCAAATCATTTT
AGCAGTCTGTTTCGAAAGGGGTTGTATTTACCTGGTATACCATAACGAGC
ATCCCTCGGTTACTCGTCCCTATAGGGGGGACGCACCAATCGTGTTGTCA
AAGATTTTCACGCGGCCGATGTTGGATCAGTCACAACCGACCGCGAAACG
GTTGAACAAAAGAAAACCCTGATAGAACAAACCGCCGACAGGCTCAGATC
ACACAGAACCGACCGCGAACCGGTCTTGAAAGATAAAAAATCTGACAAGA
CTAACCCTTCTGTGAACCGTTTCCAATTCTGGTGGCATGTAATTGTCGTG
CGTGTAATGCTGGTCATGTGAAAAGATCCAGATTATTCTGTATGCACTTA
TTACTTCATCTGTGTGTGCCAGTTTCGTCCCCCATTTTCAGCGTTAGCAT
CACTTCATAATTGTATTTCGCCGATCGCCGTATGCAGCTGCTTCACACAC
TGGTACCCTACAAGGTACAACACGAGCATACACCATACGGCCGTACCTGA
AAAAACGCCGGTTGATTCGATGTGAATTTCACTTGAACAATGAGAGTCTC
TTGTATTCGTTTTCATTATATAGGAATTTGTATAGGGGTGACAAAGTACA
AAATGCACAGGGTTTCTTTTTTGCAACCTTCGCTAGAAAGCAAAAACAAA
TGGAGCCTGAATGTCTCAGCTTCCGATTGCTCAAGTTGCGACTGTACAGT
GTAGGACAGTGTGTAAGTGTAATACAGTCGCCGTTGTGAAGTGATCGAGT
TGGCGTCAACTACGTAATACGCGCTCCATGGAACGCACTCTGGCGCCTTT
CTGCTTTGTAGAACATACACCACACGACAGCAGCCTTACTATGCGGTATA
ATAATACCTACCCAAGTGCTGCCCTATAATTTTGGATCAAGGGCTAATAT
ATTAGTACCATGTTGCACCCCCCGAGCAAAGTACGAATACTTGGACCATT
GGAGACGGATATTAAGAAGTTCAGTAAACGTTTTTGCTCGCGCACCTCCC
TTTCTTGGCGCACCAGTGCGATCTGCAACAGCTAGTTTTCAGCTTTTGCT
TTTGCACCCCCCCCCCTCCCCGTCCGTAAGGGGCACATGGACTAAATATG
CTAATCACGTTGCACCTTCAGGCGAGTATTTTGCTGATTTCCGTCGCGAA
AGCTCGAAGAATTCATCTTTTTTCCGGAGGGTTAGGTACCATGTTGTCCC
GCTGGGGGAGGGAAATGTAAGTCTCCCTTCTCCATCCTATTCTTGTACGC
CTCATCCGTTGGGTGTTCAAGTTTCGTTGAACGATGTTCACTTTTCATCG
CCTTTTCCAAGTACTTACAGCCCTGAAGGACCAACCATGTTACCCCCACG
TCTTCCCTTCCTCCCTTCCCCCCTACCAGAATCTGTTGGGAAAATCGCGT
CGGGGGAGGTGGTCCTTCCCGGCACTCCAAAACCCGGAATCGCAGCAGTA
GCGCCGGGAGCACCCGGCAGCCCAACCCTAACTCCACTGACACCAGCAAC
AGCAGCAGCAGTAGCAAAAGCAAGATTGCTTTGTCTGCACGAGAATCCAA
AAGTCGTGGGCATTCTCTGGGTAGTTCCCGTTCCCCAACGCCCCCTCAGC
GAGGACGAGCGCCTGTGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig15070:1913..5631+

>mRNA_H-paniculata_contig15070.3010.1 ID=mRNA_H-paniculata_contig15070.3010.1|Name=mRNA_H-paniculata_contig15070.3010.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1242bp|location=Sequence derived from alignment at H-paniculata_contig15070:1913..5631+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCCGACACTACCAACAGCAACAACCACGAAGTAGTACTACCAGCAGCAA
TAACAACAATCAGCCACTCCCAACGATCCAACTATCACCTGGCGGTTTCA
CACCAACCGTCACAACGTCAGCCACAATAACAACGATGACATCCAACATG
GCGTTACTCCCCACCGACCATCCTACCTCTGGCTCTTCCCGGTGTTCCTC
ATCCCAGAGCAACGTTACCAACATCGCACACAAACCAAGTACAGTCCCGA
CACTACCAACAGCAACAACCACGAAGTAGTACTACCAGCAGCAATAACAA
CAATCAGCCACTCCCAACGATCCAACTATCACCTGGCGGTTTCACACCAA
CCGTCACAACGTCAGCCACAATAACAACGATGACATCCAACATGGCGTTA
CTCCCCACCGACCATCCTACCTCTGGCTCTTCCCGGTGTTCCTCATCCCA
GAGCAACGTTACCAACATCGCACACAAACCAAGTACAGGTGGCGATGTCC
CTGACATAAGTCATACTCTAGCTGAGCAGGCGAAGCTGGCGGTGGCGGCG
GAAATTGCTAAGGCGGAGTGGGACGCGCGAGAAAAGCGTGCTTTGCGGGA
ACGGAAAGAGGCCATAGAGGCCGCGAGGTGGCGATGTCCCTGACATAAGT
CATACTCTAGCTGAGCAGGCGAAGCTGGCGGTGGCGGCGGAAATTGCTAA
GGCGGAGTGGGACGCGCGAGAAAAGCGTGCTTTGCGGGAACGGAAAGAGG
CCATAGAGGCCGCGAGAATCTGTTGGGAAAATCGCGTCGGGGGAGGTGGT
CCTTCCCGGCACTCCAAAACCCGGAATCGCAGCAGTAGCGCCGGGAGCAC
CCGGCAGCCCAACCCTAACTCCACTGACACCAGCAACAGCAGCAGCAGTA
GCAAAAGCAAGATTGCTTTGTCTGCACGAGAATCCAAAAGTCGTGGGCAT
TCTCTGGGTAGTTCCCGTTCCCCAACGCCCCCTCAGCGAGGACGAGCGCC
TGTGAATCTGTTGGGAAAATCGCGTCGGGGGAGGTGGTCCTTCCCGGCAC
TCCAAAACCCGGAATCGCAGCAGTAGCGCCGGGAGCACCCGGCAGCCCAA
CCCTAACTCCACTGACACCAGCAACAGCAGCAGCAGTAGCAAAAGCAAGA
TTGCTTTGTCTGCACGAGAATCCAAAAGTCGTGGGCATTCTCTGGGTAGT
TCCCGTTCCCCAACGCCCCCTCAGCGAGGACGAGCGCCTGTG
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