mRNA_H-paniculata_contig15061.3006.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15061.3006.1
Unique NamemRNA_H-paniculata_contig15061.3006.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig15061.3006.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 3.690e-14
Identity = 32/63 (50.79%), Postives = 46/63 (73.02%), Query Frame = 1
Query:    1 YADIWNKSMDSEFEVLAAARTFSEVPEVPEGCNVVDSKWVYKGKCDPQGMIDKTKSRMVEKGY 189
            +A IW+K+M +E E L  A TF+   ++PEGCNV+D++WV+K K D  G I KTK+R+V KG+
Sbjct:  819 HATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKTKARLVAKGF 881          
BLAST of mRNA_H-paniculata_contig15061.3006.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.740e-13
Identity = 31/63 (49.21%), Postives = 45/63 (71.43%), Query Frame = 1
Query:    1 YADIWNKSMDSEFEVLAAARTFSEVPEVPEGCNVVDSKWVYKGKCDPQGMIDKTKSRMVEKGY 189
            +A IW+K+M +E E L  A TF+   ++PEGCNV+D++WV+K K D  G I K K+R+V KG+
Sbjct:  224 HATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGF 286          
BLAST of mRNA_H-paniculata_contig15061.3006.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.750e-13
Identity = 31/63 (49.21%), Postives = 45/63 (71.43%), Query Frame = 1
Query:    1 YADIWNKSMDSEFEVLAAARTFSEVPEVPEGCNVVDSKWVYKGKCDPQGMIDKTKSRMVEKGY 189
            +A IW+K+M +E E L  A TF+   ++PEGCNV+D++WV+K K D  G I K K+R+V KG+
Sbjct:  429 HATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGF 491          
BLAST of mRNA_H-paniculata_contig15061.3006.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.750e-13
Identity = 31/63 (49.21%), Postives = 45/63 (71.43%), Query Frame = 1
Query:    1 YADIWNKSMDSEFEVLAAARTFSEVPEVPEGCNVVDSKWVYKGKCDPQGMIDKTKSRMVEKGY 189
            +A IW+K+M +E E L  A TF+   ++PEGCNV+D++WV+K K D  G I K K+R+V KG+
Sbjct:  493 HATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGF 555          
BLAST of mRNA_H-paniculata_contig15061.3006.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.750e-13
Identity = 31/63 (49.21%), Postives = 45/63 (71.43%), Query Frame = 1
Query:    1 YADIWNKSMDSEFEVLAAARTFSEVPEVPEGCNVVDSKWVYKGKCDPQGMIDKTKSRMVEKGY 189
            +A IW+K+M +E E L  A TF+   ++PEGCNV+D++WV+K K D  G I K K+R+V KG+
Sbjct:  637 HATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGF 699          
BLAST of mRNA_H-paniculata_contig15061.3006.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.750e-13
Identity = 31/63 (49.21%), Postives = 45/63 (71.43%), Query Frame = 1
Query:    1 YADIWNKSMDSEFEVLAAARTFSEVPEVPEGCNVVDSKWVYKGKCDPQGMIDKTKSRMVEKGY 189
            +A IW+K+M +E E L  A TF+   ++PEGCNV+D++WV+K K D  G I K K+R+V KG+
Sbjct:  843 HATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGF 905          
BLAST of mRNA_H-paniculata_contig15061.3006.1 vs. uniprot
Match: A0A6H5JP36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP36_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 4.460e-13
Identity = 31/63 (49.21%), Postives = 45/63 (71.43%), Query Frame = 1
Query:    1 YADIWNKSMDSEFEVLAAARTFSEVPEVPEGCNVVDSKWVYKGKCDPQGMIDKTKSRMVEKGY 189
            +A IW+K+M +E E L  A TF+   ++PEGCNV+D++WV+K K D  G I K K+R+V KG+
Sbjct:  157 HATIWDKAMCAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGF 219          
BLAST of mRNA_H-paniculata_contig15061.3006.1 vs. uniprot
Match: A0A5N6PAJ3_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PAJ3_9ASTR)

HSP 1 Score: 60.1 bits (144), Expect = 5.230e-9
Identity = 30/59 (50.85%), Postives = 37/59 (62.71%), Query Frame = 1
Query:   13 WNKSMDSEFEVLAAARTFSEVPEVPEGCNVVDSKWVYKGKCDPQGMIDKTKSRMVEKGY 189
            W  +M  E+  L    T+S VP VP G NVVD KWVYK K DPQG I + K+R+  KG+
Sbjct:  482 WRHAMAEEYSALMRNGTWSLVPRVP-GSNVVDCKWVYKIKRDPQGHIQRYKARLCAKGF 539          
BLAST of mRNA_H-paniculata_contig15061.3006.1 vs. uniprot
Match: A0A034W7T5_BACDO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Bactrocera dorsalis TaxID=27457 RepID=A0A034W7T5_BACDO)

HSP 1 Score: 60.1 bits (144), Expect = 5.250e-9
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 1
Query:   13 WNKSMDSEFEVLAAARTFSEVPEVPEGCNVVDSKWVYKGKCDPQGMIDKTKSRMVEKG 186
            W KSM  E+  L A  T+S V ++P+G  V+ SKWV++ K DP+G I+K KSR+V KG
Sbjct:  812 WEKSMQDEYAALVANNTWSVV-DLPKGQKVIGSKWVFRIKRDPEGNIEKFKSRLVAKG 868          
BLAST of mRNA_H-paniculata_contig15061.3006.1 vs. uniprot
Match: A0A5N6LF10_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LF10_9ASTR)

HSP 1 Score: 60.1 bits (144), Expect = 5.260e-9
Identity = 30/59 (50.85%), Postives = 37/59 (62.71%), Query Frame = 1
Query:   13 WNKSMDSEFEVLAAARTFSEVPEVPEGCNVVDSKWVYKGKCDPQGMIDKTKSRMVEKGY 189
            W  +M  E+  L    T+S VP VP G NVVD KWVYK K DPQG I + K+R+  KG+
Sbjct:  599 WRHAMAEEYSALMRNGTWSLVPRVP-GSNVVDCKWVYKIKRDPQGHIQRYKARLCAKGF 656          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15061.3006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JH25_9PHAE3.690e-1450.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV80_9PHAE1.740e-1349.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5LDZ0_9PHAE1.750e-1349.21CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J594_9PHAE1.750e-1349.21Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KHE8_9PHAE1.750e-1349.21CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K622_9PHAE1.750e-1349.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP36_9PHAE4.460e-1349.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5N6PAJ3_9ASTR5.230e-950.85Integrase catalytic domain-containing protein n=1 ... [more]
A0A034W7T5_BACDO5.250e-950.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N6LF10_9ASTR5.260e-950.85Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15061contigH-paniculata_contig15061:297..485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size189
Cds size165
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929208.0158336-CDS-H-paniculata_contig15061:296..4611622929208.0158336-CDS-H-paniculata_contig15061:296..461Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15061 297..461 -
1691480770.6371458-CDS-H-paniculata_contig15061:296..4611691480770.6371458-CDS-H-paniculata_contig15061:296..461Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15061 297..461 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929208.0325313-UTR-H-paniculata_contig15061:461..4851622929208.0325313-UTR-H-paniculata_contig15061:461..485Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15061 462..485 -
1691480770.6470432-UTR-H-paniculata_contig15061:461..4851691480770.6470432-UTR-H-paniculata_contig15061:461..485Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15061 462..485 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15061.3006.1prot_H-paniculata_contig15061.3006.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15061 297..461 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15061.3006.1

>prot_H-paniculata_contig15061.3006.1 ID=prot_H-paniculata_contig15061.3006.1|Name=mRNA_H-paniculata_contig15061.3006.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
MDSEFEVLAAARTFSEVPEVPEGCNVVDSKWVYKGKCDPQGMIDKTKSRM
VEKGY
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mRNA from alignment at H-paniculata_contig15061:297..485-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15061.3006.1 ID=mRNA_H-paniculata_contig15061.3006.1|Name=mRNA_H-paniculata_contig15061.3006.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=189bp|location=Sequence derived from alignment at H-paniculata_contig15061:297..485- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACGCCGACATTTGGAACAAGTCGATGGATTCAGAGTTTGAGGTACTTGC AGCAGCAAGAACCTTTTCTGAAGTACCAGAGGTACCAGAGGGATGCAATG TTGTGGATTCGAAGTGGGTGTACAAGGGGAAGTGTGATCCACAGGGCATG ATTGATAAGACAAAATCTAGAATGGTGGAGAAGGGATAT
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Coding sequence (CDS) from alignment at H-paniculata_contig15061:297..485-

>mRNA_H-paniculata_contig15061.3006.1 ID=mRNA_H-paniculata_contig15061.3006.1|Name=mRNA_H-paniculata_contig15061.3006.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig15061:297..485- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATTCAGAGTTTGAGGTACTTGCAGCAGCAAGAACCTTTTCTGAAGT
ACCAGAGGTACCAGAGGGATGCAATGTTGTGGATTCGAAGTGGGTGTACA
AGGGGAAGTGTGATCCACAGGGCATGATTGATAAGACAAAATCTAGAATG
GTGGAGAAGGGATATATGGATTCAGAGTTTGAGGTACTTGCAGCAGCAAG
AACCTTTTCTGAAGTACCAGAGGTACCAGAGGGATGCAATGTTGTGGATT
CGAAGTGGGTGTACAAGGGGAAGTGTGATCCACAGGGCATGATTGATAAG
ACAAAATCTAGAATGGTGGAGAAGGGATAT
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