mRNA_H-paniculata_contig15061.3006.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig15061.3006.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE) HSP 1 Score: 74.7 bits (182), Expect = 3.690e-14 Identity = 32/63 (50.79%), Postives = 46/63 (73.02%), Query Frame = 1 Query: 1 YADIWNKSMDSEFEVLAAARTFSEVPEVPEGCNVVDSKWVYKGKCDPQGMIDKTKSRMVEKGY 189 +A IW+K+M +E E L A TF+ ++PEGCNV+D++WV+K K D G I KTK+R+V KG+ Sbjct: 819 HATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKTKARLVAKGF 881
BLAST of mRNA_H-paniculata_contig15061.3006.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 1.740e-13 Identity = 31/63 (49.21%), Postives = 45/63 (71.43%), Query Frame = 1 Query: 1 YADIWNKSMDSEFEVLAAARTFSEVPEVPEGCNVVDSKWVYKGKCDPQGMIDKTKSRMVEKGY 189 +A IW+K+M +E E L A TF+ ++PEGCNV+D++WV+K K D G I K K+R+V KG+ Sbjct: 224 HATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGF 286
BLAST of mRNA_H-paniculata_contig15061.3006.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 1.750e-13 Identity = 31/63 (49.21%), Postives = 45/63 (71.43%), Query Frame = 1 Query: 1 YADIWNKSMDSEFEVLAAARTFSEVPEVPEGCNVVDSKWVYKGKCDPQGMIDKTKSRMVEKGY 189 +A IW+K+M +E E L A TF+ ++PEGCNV+D++WV+K K D G I K K+R+V KG+ Sbjct: 429 HATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGF 491
BLAST of mRNA_H-paniculata_contig15061.3006.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 1.750e-13 Identity = 31/63 (49.21%), Postives = 45/63 (71.43%), Query Frame = 1 Query: 1 YADIWNKSMDSEFEVLAAARTFSEVPEVPEGCNVVDSKWVYKGKCDPQGMIDKTKSRMVEKGY 189 +A IW+K+M +E E L A TF+ ++PEGCNV+D++WV+K K D G I K K+R+V KG+ Sbjct: 493 HATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGF 555
BLAST of mRNA_H-paniculata_contig15061.3006.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 1.750e-13 Identity = 31/63 (49.21%), Postives = 45/63 (71.43%), Query Frame = 1 Query: 1 YADIWNKSMDSEFEVLAAARTFSEVPEVPEGCNVVDSKWVYKGKCDPQGMIDKTKSRMVEKGY 189 +A IW+K+M +E E L A TF+ ++PEGCNV+D++WV+K K D G I K K+R+V KG+ Sbjct: 637 HATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGF 699
BLAST of mRNA_H-paniculata_contig15061.3006.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 1.750e-13 Identity = 31/63 (49.21%), Postives = 45/63 (71.43%), Query Frame = 1 Query: 1 YADIWNKSMDSEFEVLAAARTFSEVPEVPEGCNVVDSKWVYKGKCDPQGMIDKTKSRMVEKGY 189 +A IW+K+M +E E L A TF+ ++PEGCNV+D++WV+K K D G I K K+R+V KG+ Sbjct: 843 HATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGF 905
BLAST of mRNA_H-paniculata_contig15061.3006.1 vs. uniprot
Match: A0A6H5JP36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP36_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 4.460e-13 Identity = 31/63 (49.21%), Postives = 45/63 (71.43%), Query Frame = 1 Query: 1 YADIWNKSMDSEFEVLAAARTFSEVPEVPEGCNVVDSKWVYKGKCDPQGMIDKTKSRMVEKGY 189 +A IW+K+M +E E L A TF+ ++PEGCNV+D++WV+K K D G I K K+R+V KG+ Sbjct: 157 HATIWDKAMCAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGF 219
BLAST of mRNA_H-paniculata_contig15061.3006.1 vs. uniprot
Match: A0A5N6PAJ3_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PAJ3_9ASTR) HSP 1 Score: 60.1 bits (144), Expect = 5.230e-9 Identity = 30/59 (50.85%), Postives = 37/59 (62.71%), Query Frame = 1 Query: 13 WNKSMDSEFEVLAAARTFSEVPEVPEGCNVVDSKWVYKGKCDPQGMIDKTKSRMVEKGY 189 W +M E+ L T+S VP VP G NVVD KWVYK K DPQG I + K+R+ KG+ Sbjct: 482 WRHAMAEEYSALMRNGTWSLVPRVP-GSNVVDCKWVYKIKRDPQGHIQRYKARLCAKGF 539
BLAST of mRNA_H-paniculata_contig15061.3006.1 vs. uniprot
Match: A0A034W7T5_BACDO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Bactrocera dorsalis TaxID=27457 RepID=A0A034W7T5_BACDO) HSP 1 Score: 60.1 bits (144), Expect = 5.250e-9 Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 1 Query: 13 WNKSMDSEFEVLAAARTFSEVPEVPEGCNVVDSKWVYKGKCDPQGMIDKTKSRMVEKG 186 W KSM E+ L A T+S V ++P+G V+ SKWV++ K DP+G I+K KSR+V KG Sbjct: 812 WEKSMQDEYAALVANNTWSVV-DLPKGQKVIGSKWVFRIKRDPEGNIEKFKSRLVAKG 868
BLAST of mRNA_H-paniculata_contig15061.3006.1 vs. uniprot
Match: A0A5N6LF10_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LF10_9ASTR) HSP 1 Score: 60.1 bits (144), Expect = 5.260e-9 Identity = 30/59 (50.85%), Postives = 37/59 (62.71%), Query Frame = 1 Query: 13 WNKSMDSEFEVLAAARTFSEVPEVPEGCNVVDSKWVYKGKCDPQGMIDKTKSRMVEKGY 189 W +M E+ L T+S VP VP G NVVD KWVYK K DPQG I + K+R+ KG+ Sbjct: 599 WRHAMAEEYSALMRNGTWSLVPRVP-GSNVVDCKWVYKIKRDPQGHIQRYKARLCAKGF 656 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15061.3006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig15061.3006.1 >prot_H-paniculata_contig15061.3006.1 ID=prot_H-paniculata_contig15061.3006.1|Name=mRNA_H-paniculata_contig15061.3006.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp MDSEFEVLAAARTFSEVPEVPEGCNVVDSKWVYKGKCDPQGMIDKTKSRMback to top mRNA from alignment at H-paniculata_contig15061:297..485- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig15061.3006.1 ID=mRNA_H-paniculata_contig15061.3006.1|Name=mRNA_H-paniculata_contig15061.3006.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=189bp|location=Sequence derived from alignment at H-paniculata_contig15061:297..485- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig15061:297..485- >mRNA_H-paniculata_contig15061.3006.1 ID=mRNA_H-paniculata_contig15061.3006.1|Name=mRNA_H-paniculata_contig15061.3006.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig15061:297..485- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |