mRNA_H-paniculata_contig15060.3005.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig15060.3005.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE) HSP 1 Score: 181 bits (458), Expect = 7.910e-49 Identity = 107/234 (45.73%), Postives = 144/234 (61.54%), Query Frame = 1 Query: 22 KSIGSRWVFKVKSDNSYKARVMGQGWGQEASRDYGNIDSPVYRIQSVRMVTTVAAEMDLDVIQLDAQTAFLNAPLKEEVYVPLPLAFE---KTGSVTDVPLVMKLLLSLYDLRQSPQNWWVTMDRYFGEIEFVALKSDRCVYVYIAKDDGEV--TAFVTSKL-----SKVAVILTLYLMKRLKMTDLGDVYLVLGMKITWDGKIGTLSINQSGYTKGILEKFVIDKCNPATTPG 693 K I S+WVFK K+ S+K R++ QGW Q D GN +PV R QS+RM+ +A + +L++ Q+D TAFL A + E V+V P FE K G LVM+L SLY L QSP NW+ T+D + EI FV LKSD CVY+Y DD +V T +V L S+ ++ L +R KMTD+G+V LVLGM+I D GTL+I+Q Y+K ILE+F + +C P +TPG Sbjct: 504 KRIKSKWVFKRKAGGSFKGRLVAQGWNQVPGLDCGNTYAPVCRFQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDGG----DLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLY-DHDDVQVYLTLYVDDLLLAGNNSRAISMIKKKLTQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYSKSILERFGMSECKPTSTPG 732
BLAST of mRNA_H-paniculata_contig15060.3005.1 vs. uniprot
Match: A0A6H5JIN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN1_9PHAE) HSP 1 Score: 167 bits (422), Expect = 9.840e-44 Identity = 96/227 (42.29%), Postives = 134/227 (59.03%), Query Frame = 1 Query: 22 KSIGSRWVFKVKSDNSYKARVMGQGWGQEASRDYGNIDSPVYRIQSVRMVTTVAAEMDLDVIQLDAQTAFLNAPLKEEVYVPLPLAFE---KTGSVTDVPLVMKLLLSLYDLRQSPQNWWVTMDRYFGEIEFVALKSDRCVYVYIAKDDGEVTAFVTSKLSKVAVILTLYLMKRLKMTDLGDVYLVLGMKITWDGKIGTLSINQSGYTKGILEKFVIDKCNPATTPG 693 K I SRWVFK K D S+K R++ QGW Q D G+ +PV R+QS+RM+ +A + +L++ Q+D TAFL A + E V+V P FE K G LVM+L SLY L QSP NW+ T+D + EI ++ L D + +A ++ + + KL + R KMTD+G+V LVLGM+I D GTL+I+Q YTK ILE+F + +C P +TPG Sbjct: 881 KRIKSRWVFKRKVDGSFKGRLVAQGWNQVPGLDCGSTYAPVCRLQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDGG----DLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIVYLTLYVDDLL---LASNNSNAISMIKKKLKQ-----------RFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYTKSILERFGMSECKPTSTPG 1089
BLAST of mRNA_H-paniculata_contig15060.3005.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE) HSP 1 Score: 142 bits (359), Expect = 2.170e-35 Identity = 73/139 (52.52%), Postives = 97/139 (69.78%), Query Frame = 1 Query: 28 IGSRWVFKVKSDNSYKARVMGQGWGQEASRDYGNIDSPVYRIQSVRMVTTVAAEMDLDVIQLDAQTAFLNAPLKEEVYVPLPLAFEKTGSVTDVPLVMKLLLSLYDLRQSPQNWWVTMDRYFGEIEFVALKSDRCVYVY 444 IGS+WVFKVK +N++KAR++ +GW Q RD G +PV R+QS+RMV +AAE DLDVIQLD +TAFL A ++E V+V + +E ++ ++ LVMKL SL L QSPQ+W T+D EI F LKSD CVY+Y Sbjct: 349 IGSKWVFKVKPENTHKARLVAKGWNQVPGRDCGGTFAPVCRLQSIRMVFAIAAEKDLDVIQLDVKTAFLYADIEENVFVEMAPGYE-AKNMEELQLVMKLEKSLDGLAQSPQDWLKTIDSSLVEIGFFPLKSDTCVYIY 486
BLAST of mRNA_H-paniculata_contig15060.3005.1 vs. uniprot
Match: A0A6H5KL30_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL30_9PHAE) HSP 1 Score: 140 bits (354), Expect = 1.240e-34 Identity = 90/229 (39.30%), Postives = 124/229 (54.15%), Query Frame = 1 Query: 34 SRWVFKVKSDNSYKARVMGQGWGQEASRDYGNIDSPVYRIQSVRMVTTVAAEMDLDVIQLDAQTAFLNAPLKEEVYVPLPLAFEKTGSVTDVPLVMKLLLSLYDLRQSPQNWWVTMDRYFGEIEFVALKSDRCVYVYIAKDDGEVTAFVTSKL---------SKVAVILTLYLMKRLKMTDLGDVYLVLGMKITWDGKIGTLSINQSGYTKGILEKFVIDKCNPATTPG 693 S+WVFK K+ S+K R++ QGW Q D G+ +P + Q+D TAFL A + E V V P FE G LVM+L SLY L QSP NW+ T+D + EI FV L+SD CVY+Y D +V F+T + + V +++ L +R KMTD+G+V LVLGM+I D GTL+ +Q Y+K ILE+F + + P +TPG Sbjct: 820 SKWVFKRKAGGSFKRRLVAQGWNQVPGLDCGSTYAP-------------PCNSTWSLFQMDLSTAFLCADILENVLVEQPPGFEVNGK-DGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLQSDTCVYLY---DHDDVQVFLTLYVDDLLLAGNNANVMLMIKNKLKQRSKMTDMGEVKLVLGMEIKRDRNQGTLTTSQEAYSKSILERFGMSERKPTSTPG 1031
BLAST of mRNA_H-paniculata_contig15060.3005.1 vs. uniprot
Match: A0A6G0WHK2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHK2_9STRA) HSP 1 Score: 129 bits (325), Expect = 1.410e-32 Identity = 79/236 (33.47%), Postives = 130/236 (55.08%), Query Frame = 1 Query: 22 KSIGSRWVFKVK-----SDNSYKARVMGQGWGQEASRDYGNIDSPVYRIQSVRMVTTVAAEMDLDVIQLDAQTAFLNAPLKEEVYVPLPLAFEKTGSVTDVPLVMKLLLSLYDLRQSPQNWWVTMDRYFGEIEFVALKSDRCVYVYIAKDDGEVTAF------VTSKLSKVAVILTLYLMKRLKMTDLGDVYLVLGMKITWDGKIGTLSINQSGYTKGILEKFVIDKCNPATTPGN 696 K+IG +WVFKVK S + YKAR++ +G+ Q DY +PV + S+R++ ++AA+ +L++ Q+D TAFLN+ L E++Y+ +P+ + V+KL SLY L+Q+P+ W T+D + I FV K+D C+Y+ +D + + + S ++ + L KR KMTDLG + LG++I G++ I+QS + K +L KF + P N Sbjct: 87 KAIGCKWVFKVKEKADGSIDKYKARLVAKGYSQTFGIDYEETFTPVAKFTSIRVLLSLAAKHNLELQQMDVNTAFLNSDLDEDIYMEIPMGLNDHKNPGLSKPVLKLKKSLYGLKQAPRLWNQTIDGFMLSIGFVKSKADHCIYIKRQDEDIILVSLYVDDLILASNSDEMMQTTKIALSKRFKMTDLGPLSYCLGIEIVRSPS-GSVFIHQSKFLKSVLTKFYMQDSKKVHVPNN 321
BLAST of mRNA_H-paniculata_contig15060.3005.1 vs. uniprot
Match: A0A225WDK2_9STRA (Integrase, catalytic core protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WDK2_9STRA) HSP 1 Score: 132 bits (332), Expect = 5.620e-32 Identity = 83/238 (34.87%), Postives = 131/238 (55.04%), Query Frame = 1 Query: 22 KSIGSRWVFKVKSD-----NSYKARVMGQGWGQEASRDYGNIDSPVYRIQSVRMVTTVAAEMDLDVIQLDAQTAFLNAPLKEEVYVPLPLAFEKTGSVTDVPLVMKLLLSLYDLRQSPQNWWVTMDRYFGEIEFVALKSDRCVYVY----------IAKDDGEVTAFVTSKLSKVAVILTLYLMKRLKMTDLGDVYLVLGMKITWDGKIGTLSINQSGYTKGILEKFVIDKCNPATTP 690 +++ S+W+FK+K D YKAR++ +G+ Q DY I +PV R++S+R++ + A D + Q D TAFLN L EEVY+ P E+ G LV +LL +LY L+Q+P+ W + Y FV L SD C+YV I DD + A S++ ++ +L+ K D+G V+ +LG+++ + + TLSI+Q+ Y KG++EKF + + NP TP Sbjct: 83 RALTSKWIFKIKYDALGNIERYKARLVIRGYEQIKYIDYEEIFAPVIRLESLRLLLALVAINDWECEQTDVDTAFLNGDLAEEVYMIQPEGLEEAGKED---LVCQLLQALYGLKQAPRAWHKKLTDYLKSKGFVKLDSDSCIYVRTGGSGVAIIGIYVDDLLLIADTASRIQEMKSMLS----AGFKCKDMGAVHHILGLRVKRNRALKTLSIDQTAYAKGVIEKFNLMQLNPCKTP 313
BLAST of mRNA_H-paniculata_contig15060.3005.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE) HSP 1 Score: 132 bits (331), Expect = 1.210e-31 Identity = 78/226 (34.51%), Postives = 127/226 (56.19%), Query Frame = 1 Query: 34 SRWVFKVKSDNSYKARVMGQGWGQEASRDYGNIDSPVYRIQSVRMVTTVAAEMDLDVIQLDAQTAFLNAPLKEEVYVPLPLAFEKTGSVTDVPLVMKLLLSLYDLRQSPQNWWVTMDRYFGEIEFVALKSDRCVYVYIAKDDGEVTAF------VTSKLSKVAVILTLYLMKRLKMTDLGDVYLVLGMKITWDGKIGTLSINQSGYTKGILEKFVIDKCNPATTPG 693 +R+VFK+K+D+ +KAR++ G Q A R +G +PV R+ S+RM+ +A E +V QLD AFLNA +VYV E+ T +V KL SLY L QSP W ++ + +SD CVY++++ D+ + A +T ++ LM +MTD+G+V V+G+++ D + GTL+I+Q Y + IL+++ +++ NP +TPG Sbjct: 268 TRFVFKIKADSRFKARLVAGGHRQRAGRHFGRNYAPVTRLGSIRMLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPG 493
BLAST of mRNA_H-paniculata_contig15060.3005.1 vs. uniprot
Match: A0A8J5YVE7_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YVE7_9ROSI) HSP 1 Score: 132 bits (331), Expect = 1.310e-31 Identity = 77/229 (33.62%), Postives = 125/229 (54.59%), Query Frame = 1 Query: 22 KSIGSRWVFKVKS------DNSYKARVMGQGWGQEASRDYGNIDSPVYRIQSVRMVTTVAAEMDLDVIQLDAQTAFLNAPLKEEVYVPLPLAFEKTGSVTDVPLVMKLLLSLYDLRQSPQNWWVTMDRYFGEIEFVALKSDRCVYVYIAKDDGEV-------TAFVTSKLSKVAVILTLYLMKRLKMTDLGDVYLVLGMKITWDGKIGTLSINQSGYTKGILEKFVIDK 669 ++IG +WVF K D YKAR++ +G+ Q+ DY ++ SPV + S+R++ + A+++L++ QLD TAFL+ L+EE+Y+ P +E G + V KL SLY L+QSP+ W+ D + ++ K D CVY+ D + + SK K L L + +M DLG+V +LGM+I+ D + G L +NQ Y K +L+ F +++ Sbjct: 310 RAIGCKWVFAKKDRSPSKKDVRYKARLVAKGYAQKEGIDYNDVFSPVVKHSSIRILLALVAQLNLELAQLDVNTAFLHGELEEEIYMTQPEGYEDAGGIN---WVCKLNKSLYGLKQSPRQWYKRFDSFMRRQKYTRSKYDNCVYLQKLHDRSFIYLLLYVDDMLIASKSQKEIDKLKAQLNEEFEMKDLGEVKKILGMEISRDRQKGKLCLNQKQYLKKVLQCFGVNE 535
BLAST of mRNA_H-paniculata_contig15060.3005.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE) HSP 1 Score: 131 bits (329), Expect = 2.530e-31 Identity = 96/233 (41.20%), Postives = 126/233 (54.08%), Query Frame = 1 Query: 73 KARVMGQG--WGQEASRDYGNI-DSPVY-------------RIQSVRMVTTVAAEMDLDVIQLDAQTAFLNAPLKEEVYVPLPLAFE---KTGSVTDVPLVMKLLLSLYDLRQSPQNWWVTMDRYFGEIEFVALKSDRCVYVYIAKDDGEV--TAFVTSKL-----SKVAVILTLYLMKRLKMTDLGDVYLVLGMKITWDGKIGTLSINQSGYTKGILEKFVIDKCNPATTPG 693 +AR M G W A R+ N+ + VY RI+S + V ++LD Q+D TAFL A + E V+V P FE K G LVM+L SLY L QSP NW+ T+D + EI FV LKSD CVY+Y DD +V T +V L S ++ L +R KMTD+G+V LVLGM+I D G L+I+Q YTK ILE+F + +C P +TPG Sbjct: 618 EARAMSDGEQWNAAAEREIANMKERQVYKLVPRTAVPPGRKRIKSKWVFKPVQFNLELD--QMDLSTAFLYADILENVFVEQPPGFEVKDKDGG----DLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLY-DHDDVQVYLTLYVDDLLLAGNNSNAISMIKKKLKQRFKMTDMGEVKLVLGMEIKRDRNQGALTISQEAYTKSILERFGMSECKPTSTPG 843
BLAST of mRNA_H-paniculata_contig15060.3005.1 vs. uniprot
Match: A0A6A3HNZ7_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3HNZ7_9STRA) HSP 1 Score: 130 bits (327), Expect = 2.650e-31 Identity = 83/236 (35.17%), Postives = 137/236 (58.05%), Query Frame = 1 Query: 22 KSIGSRWVFKVK-----SDNSYKARVMGQGWGQEASRDYGNIDSPVYRIQSVRMVTTVAAEMDLDVIQLDAQTAFLNAPLKEEVYVPLPLAFEKTGSVTDVPLVMKLLLSLYDLRQSPQNWWVTMDRYFGEIEFVALKSDRCVYVYIAKDDGE---VTAFVTSKLSKVAVILTLYLMKRL-----KMTDLGDVYLVLGMKITWDGKIGTLSINQSGYTKGILEKFVIDKCNPATTP 690 K + +RWVF+VK + + +KAR++ +G+ Q DY + SPV R++S+R++ T+AA + +V Q+D TAFLN + EVY+ P F+ G V +LL SLY L+Q+P+ W+ + + E F LK++ CV V + DG+ + +V + I + MKR+ +M DLG+++ +LG ++T + + T+ I+QS YTK +LE+F ++KCN TP Sbjct: 320 KVLRNRWVFRVKYLADGNIDRFKARLVIKGFMQVCGIDYLEVYSPVVRLESLRVLLTLAAVWNYEVHQMDVTTAFLNGKIDVEVYMEQPEGFKVPGKEN---WVCRLLKSLYGLKQAPRVWFQLLKAFLEEQGFALLKAEACVAVKVI--DGQLVFIPLYVDDLILFAPNIKLINEMKRMFIERFEMKDLGELHYILGWEVTRNRQERTIFISQSKYTKAVLERFNMEKCNGCKTP 550 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15060.3005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig15060.3005.1 >prot_H-paniculata_contig15060.3005.1 ID=prot_H-paniculata_contig15060.3005.1|Name=mRNA_H-paniculata_contig15060.3005.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=232bp DQNNSRPKSIGSRWVFKVKSDNSYKARVMGQGWGQEASRDYGNIDSPVYRback to top mRNA from alignment at H-paniculata_contig15060:4513..5267- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig15060.3005.1 ID=mRNA_H-paniculata_contig15060.3005.1|Name=mRNA_H-paniculata_contig15060.3005.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=755bp|location=Sequence derived from alignment at H-paniculata_contig15060:4513..5267- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig15060:4513..5267- >mRNA_H-paniculata_contig15060.3005.1 ID=mRNA_H-paniculata_contig15060.3005.1|Name=mRNA_H-paniculata_contig15060.3005.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1392bp|location=Sequence derived from alignment at H-paniculata_contig15060:4513..5267- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |