mRNA_H-paniculata_contig1506.3003.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1506.3003.1
Unique NamemRNA_H-paniculata_contig1506.3003.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1506.3003.1 vs. uniprot
Match: D8LLW6_ECTSI (Response receiver n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLW6_ECTSI)

HSP 1 Score: 374 bits (961), Expect = 1.250e-115
Identity = 197/273 (72.16%), Postives = 219/273 (80.22%), Query Frame = 1
Query:    1 TLTLTQYQEAFISAAVDGAFLYDLNDDDLKSSLGVEHRLHRKKILNSILRLKAAESERIRPVTLKTAVSSRVATGFSPEPLQGNNFGQA----PLGDAAEAMGNAV---------ASGREATPV-IPINFKELVVLARRGKYKQIREILDPLPERRFDPGIVRVPYVEDFGTAYLDAYEQEPFNLNKVDNHGNTLLMVAAQNGNIKMAKLFVHKGANPNHQNKQGQTAGHYAVSYQFFDFSEWLFLPGGDGGGADDTLVNKFGLDPYDGLQAE 777
            TLTLTQYQEAFI+AAVDGAFLYDLNDDDLKSSLGVEHRLHRKKILNSI RLKAAE+ER+RPV L +A+SS+     SPE     +F Q      LGDA EA+G            ASG    PV +PI FKEL+VL RRGKYKQIREIL+PLP+RRFD   +RVPYV  FGTAY+DAYEQEPFNLNK D+HGNTLL+VAAQNGNIKMAKL+V+KGANPNHQNK GQ+AGHYAVSYQFF+ SEWLFL  G+GGGADDTL N FGL PYDGLQ +
Sbjct: 2176 TLTLTQYQEAFIAAAVDGAFLYDLNDDDLKSSLGVEHRLHRKKILNSIGRLKAAEAERVRPVALNSAMSSQKGMQGSPEGFHQQSFDQGFDPVILGDAGEALGRVGTADGGGSPGASGGGIGPVSVPIQFKELLVLTRRGKYKQIREILEPLPDRRFDTSTIRVPYVTGFGTAYVDAYEQEPFNLNKTDDHGNTLLIVAAQNGNIKMAKLYVYKGANPNHQNKAGQSAGHYAVSYQFFEMSEWLFLQDGNGGGADDTLENSFGLGPYDGLQPD 2448          
BLAST of mRNA_H-paniculata_contig1506.3003.1 vs. uniprot
Match: A0A7S3XN59_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XN59_HETAK)

HSP 1 Score: 277 bits (709), Expect = 2.740e-89
Identity = 154/274 (56.20%), Postives = 187/274 (68.25%), Query Frame = 1
Query:    1 TLTLTQYQEAFISAAVDGAFLYDLNDDDLKSSLGVEHRLHRKKILNSILRLKAAESERIRPVTLKT--------AVSSRVATGFSP-----EPLQGNNFGQA--PLGDAAEAMGNAVASGREATPVIPINFKELVVLARRGKYKQIREILDPLPERRFDPGIVRVPYVEDFGTAYLDAYEQEPFNLNKVDNHGNTLLMVAAQNGNIKMAKLFVHKGANPNHQNKQGQTAGHYAVSYQFFDFSEWLFLPGGDGGGADDTLVNKFGLDPYDGLQAE 777
            TL L+QYQEAF+ AAVDG FLYDL+DDDLK++LGVEHRLHRKKILN + RLK AE E  + +  +         A  S V +   P     +P  G+    A  P   AA  +G    + +    V  ++ KE+V   R GK+K+I E LDPLP R+FDP +VRVPYVEDFGTAY +AYE+E FNLNK D+ GNT L+VA QNGN K+A L V KGANPNHQN+QGQTAGHYA++YQFFDFS WLF P G  GG DDT+ N++GL  YDGL  E
Sbjct:   68 TLKLSQYQEAFVDAAVDGEFLYDLDDDDLKNTLGVEHRLHRKKILNFVARLKRAEFEHDQQLRRQMRAGXXXXXAGPSAVNSYMDPAVDAADPALGDPGTAALPPGALAAATVGADDPAAQARAAVNALDIKEIVGWVRHGKFKKIAEALDPLPNRKFDPALVRVPYVEDFGTAYQEAYEREVFNLNKADDFGNTPLLVAGQNGNRKIAALLVQKGANPNHQNQQGQTAGHYALAYQFFDFSSWLFDPAG--GGGDDTIENRYGLGVYDGLAPE 339          
BLAST of mRNA_H-paniculata_contig1506.3003.1 vs. uniprot
Match: A0A7S2B1B5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B1B5_9STRA)

HSP 1 Score: 265 bits (676), Expect = 9.540e-85
Identity = 146/279 (52.33%), Postives = 177/279 (63.44%), Query Frame = 1
Query:    1 TLTLTQYQEAFISAAVDGAFLYDLNDDDLKSSLGVEHRLHRKKILNSILRLKAAESERIRPVTLKTAVSSRVATGFSPEPLQGNNFGQAPLGDAAEAMGN---------------AVASGREATPVI------PINFKELVVLARRGKYKQIREILDPLPERRFDPGIVRVPYVEDFGTAYLDAYEQEPFNLNKVDNHGNTLLMVAAQNGNIKMAKLFVHKGANPNHQNKQGQTAGHYAVSYQFFDFSEWLFLPGGDGGGADDTLVNKFGLDPYDGLQA 774
            TL+L QY+EAF+ AAVDG FLYDLNDDDLK++LG+EHRLHRKKILN + RLKAAE+ER         +                       GD   AM N                  SG  A   +      P+   EL+   R  KYK++RE  D LP +RFDP +V+ PYVEDFGTAYLDAYE+E FNLNK+D  GNTL+++A+QNGN K+AKL V KGANPNHQN+QGQT+GH+A SY F+D   WLF P  +G GADDTL+N+FGL  YDGL A
Sbjct:   44 TLSLGQYREAFVDAAVDGNFLYDLNDDDLKNTLGIEHRLHRKKILNMVQRLKAAEAER--------NMXXXXXXXXXXXXXXXXXXXXXXPGDDYLAMANXXXXXXXXXXXXXXIVAVSGASAEQAVEDVERPPLVLDELIGWVRHSKYKKLREAFDHLPNKRFDPQLVKAPYVEDFGTAYLDAYEREAFNLNKMDEFGNTLMLIASQNGNEKIAKLLVEKGANPNHQNRQGQTSGHFANSYGFWDLLSWLFDP--EGAGADDTLLNRFGLGVYDGLSA 312          
BLAST of mRNA_H-paniculata_contig1506.3003.1 vs. uniprot
Match: A0A7S3ZRA3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZRA3_9STRA)

HSP 1 Score: 283 bits (725), Expect = 6.210e-84
Identity = 148/261 (56.70%), Postives = 190/261 (72.80%), Query Frame = 1
Query:    1 TLTLTQYQEAFISAAVDGAFLYDLNDDDLKSSLGVEHRLHRKKILNSILRLKAAESERIRP--VTLKTAVSSRVATGFSPEPLQGNNFGQAPLGDAAEAMGNAVASGREATPVIPINFKELVVLARRGKYKQIREILDPLPERRFDPGIVRVPYVEDFGTAYLDAYEQEPFNLNKVDNHGNTLLMVAAQNGNIKMAKLFVHKGANPNHQNKQGQTAGHYAVSYQFFDFSEWLFLPGGDGGGADDTLVNKFGLDPYDGLQAE 777
            TL+L QY+EAF+ AAVDGAFLYDL+DDDL+++LG+EHRLHRKKILN   +L+A+E ER +   V ++T  +   A G +P   Q +  G A   +AAE                P++F E++ L R GK  ++++ L P+ +++FDP IV+VPYVEDFGTAY+DAYE+E FNLNKV+ HGNT+L VAAQNGN+K+AKL V KGANPNHQNK GQTAGH+A +YQF+DF  WLF P  +GGGADDTL N +GL PYDGL  E
Sbjct: 1982 TLSLGQYREAFVDAAVDGAFLYDLDDDDLRNTLGIEHRLHRKKILNMTTKLRASEQERNKQMRVFMQTGQTGVAAAGATPLD-QYSKTGAAEGEEAAEEEEK------------PLDFDEVMALVRHGKVSRLKDALAPIAKKKFDPAIVKVPYVEDFGTAYVDAYERETFNLNKVNEHGNTMLHVAAQNGNVKIAKLLVEKGANPNHQNKGGQTAGHFANAYQFYDFLSWLFDP--NGGGADDTLENMYGLGPYDGLSVE 2227          
BLAST of mRNA_H-paniculata_contig1506.3003.1 vs. uniprot
Match: A0A836CMF0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMF0_9STRA)

HSP 1 Score: 253 bits (645), Expect = 3.440e-73
Identity = 134/260 (51.54%), Postives = 176/260 (67.69%), Query Frame = 1
Query:    1 TLTLTQYQEAFISAAVDGAFLYDLNDDDLKSSLGVEHRLHRKKILNSILRLKAAESERIRPVTLKTAVSSRVATGFSPEPLQGNNFGQAPLGDAA-EAMGNAVASGREATPVIPINFKELVVLARRGKYKQIREILDPLPERRFDPGIVRVPYVEDFGTAYLDAYEQEPFNLNKVDNHGNTLLMVAAQNGNIKMAKLFVHKGANPNHQNKQGQTAGHYAVSYQFFDFSEWLFLPGGDGGGADDTLVNKFGLDPYDGLQAE 777
            +L L QY+EAF  AA+DG+FLYDL+D+DL ++LGVEHRLHRKK+L +I RL+ AE+ER R +TL                        + L  AA +A+G     G    P  P+ F+EL  L R  K +++ E L  LP++R+DP   RV +V+  GTAY +AYE +PF+LNK D+HGNTLL+VAAQNG +K+A+L V KGAN NHQN+QGQTAGHYA +Y+F DF+EWL+   G+   ADDTL+N+FGL PYDGL  E
Sbjct: 2273 SLALPQYREAFADAAIDGSFLYDLSDEDLNNTLGVEHRLHRKKLLGAIDRLRRAEAERDRQLTLSAVARGXXXXXXXXXXXXXXXTRASTLSAAALDALGPG---GAGDAPPPPLKFEELAALTRHRKLRRLEEALAQLPDKRYDPNATRVQFVDGVGTAYTEAYEFQPFHLNKADDHGNTLLLVAAQNGALKVAQLLVRKGANANHQNRQGQTAGHYATAYRFLDFAEWLY---GEAR-ADDTLLNRFGLGPYDGLSTE 2525          
BLAST of mRNA_H-paniculata_contig1506.3003.1 vs. uniprot
Match: A0A7S2LVQ2_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LVQ2_9STRA)

HSP 1 Score: 211 bits (536), Expect = 3.330e-62
Identity = 121/289 (41.87%), Postives = 170/289 (58.82%), Query Frame = 1
Query:    1 TLTLTQYQEAFISAAVDGAFLYDLNDDDLKSSLGVEHRLHRKKILNSILRLKAAESE------------RIRPVTLKTAVSSRVATGFSPEPL---------QGNNFGQ----------APLGDAAEAMGNAVASGREATPVIPI-NFKELVVLARRGKYKQIREILDPLPERRFDPGIVRVPYVEDFGTAYLDAYEQEPFNLNKVDNHGNTLLMVAAQNGNIKMAKLFVHKGANPNHQNKQGQTAGHYAVSYQFFDFSEWLFLPGGDGGGADDTLVNKFGLDPYDGLQ 771
            +++L+QYQ AF   AVDG+ L +L DDDL+++LGVEHRLHRKK+L SI  LK   SE            + +P    T+    + +  SP            + +N  +          +P  + + ++ + +       P IP+ N  +L    R  K++ IR+ L  + +  F    +R+ +VE+ GTAY D YE+EPFNLN+VD HGNTL+ + AQ GNI++ KL V KGANPNHQNKQGQT GH+AV+YQF++F+ WLF     GGGA+D L N F L PYDGL+
Sbjct:  160 SISLSQYQSAFQEGAVDGSLLCELTDDDLRNTLGVEHRLHRKKLLFSIRCLKNYASEAQISQHQPFGNAQTQPQHFVTSSGQSIQSVMSPNSTLYGGDEAVTRDSNISRNRNEDYPNVSSPAAEKSNSVLDILTPSNRDKPGIPLCNINQLRAWVRHQKHENIRDALFHVADTPFHSRNLRLQFVEEIGTAYTDQYEREPFNLNRVDEHGNTLMHITAQTGNIRIGKLLVRKGANPNHQNKQGQTPGHFAVAYQFYEFASWLFDE--KGGGANDLLTNVFDLGPYDGLE 446          
BLAST of mRNA_H-paniculata_contig1506.3003.1 vs. uniprot
Match: A0A485LIE9_9STRA (Aste57867_21537 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LIE9_9STRA)

HSP 1 Score: 220 bits (560), Expect = 8.510e-62
Identity = 128/275 (46.55%), Postives = 160/275 (58.18%), Query Frame = 1
Query:    1 TLTLTQYQEAFISAAVDGAFLYDLNDDDLKSSLGVEHRLHRKKILNSILRLKAAES---ERI--RPVTLKTAVSSRVATGFSPEPLQGNNFGQAPLGDAAEAMGNAVASGREATPV-----------IPINFKELVVLARRGKYKQIREILDPLPERRFDPGIVRVPYVEDFGTAYLDAYEQEPFNLNKVDNHGNTLLMVAAQNGNIKMAKLFVHKGANPNHQNKQGQTAGHYAVSYQFFDFSEWLFLPGGDGGGADDTLVNKFGLDPYDGLQAE 777
            TL+L QY++AF    VDGA LYDL+D DL+ SLG+E  LHRKKIL ++ RLK AE    +R+  RP     AV+  VA      PL         +  A          G  A P+           IPI F EL  L R GK KQ++E L+  P++ FD   V+  +++  GT Y DA E + F+LNK D+HGNTLL++AAQN  +K+A+  V KGANPNHQNKQGQTAGHYA++Y FFD   WL  P  D GG  D L N  GL  YDGL  E
Sbjct: 1777 TLSLGQYKKAFADGTVDGALLYDLDDHDLRFSLGIEFELHRKKILQTVERLKQAEGVTRDRLYGRPAVAAAAVAPLVAGVQPASPLPTATAPSFAVAAAXXXXXXXXXXGASAAPLPQPAADVTLPPIPIRFDELCSLVRNGKLKQVKEALEKWPDKAFDKLSVKTQHIDGVGTVYEDALEHQAFHLNKSDDHGNTLLLMAAQNNLLKVAQFLVSKGANPNHQNKQGQTAGHYAMAYSFFDLGAWLLDP--DKGGGRDDLANMHGLTAYDGLSPE 2049          
BLAST of mRNA_H-paniculata_contig1506.3003.1 vs. uniprot
Match: A0A024TK00_9STRA (SAM domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TK00_9STRA)

HSP 1 Score: 218 bits (556), Expect = 1.530e-61
Identity = 126/269 (46.84%), Postives = 160/269 (59.48%), Query Frame = 1
Query:    1 TLTLTQYQEAFISAAVDGAFLYDLNDDDLKSSLGVEHRLHRKKILNSILRLKAAESERIRPVTLKTAVSSRVATGFSPEPLQGNNFGQAPL-----------GDAAEAMGNAVA--SGREATPVIPINFKELVVLARRGKYKQIREILDPLPERRFDPGIVRVPYVEDFGTAYLDAYEQEPFNLNKVDNHGNTLLMVAAQNGNIKMAKLFVHKGANPNHQNKQGQTAGHYAVSYQFFDFSEWLFLPGGDGGGADDTLVNKFGLDPYDGL 768
            TL+L QY++AF    VDG+ LYDLND DL+ SLG+E  LHRKKIL ++ RLK AE      V +    SS VA   +  P+Q      +P            G A +A G AV   S  E +P + I F E+  L R GK KQ++E  +  P++ FDP  V+V      GT Y D  E + F++NK D+HGN+LL++AAQN  +K+ +  V KGANPNHQNKQGQTAGHYA++Y FFD   WL  P  D GG  D LVN  GL  YDGL
Sbjct:  772 TLSLGQYKQAFSDGTVDGSLLYDLNDHDLRYSLGIEFDLHRKKILQAVERLKRAEG-----VVVDKLYSSPVA---ATAPMQAQQTATSPAMTLPSAGTVMNGPAPQAGGGAVPQPSTTEVSPSLVIRFDEICSLVRNGKLKQVKEAFEKWPDKAFDPVSVKVQNAAGVGTVYEDGVEHQAFHMNKTDDHGNSLLLLAAQNNLVKVCQFLVSKGANPNHQNKQGQTAGHYAMAYSFFDLGAWLLDP--DKGGGRDDLVNMHGLTAYDGL 1030          
BLAST of mRNA_H-paniculata_contig1506.3003.1 vs. uniprot
Match: A0A7S2SMC3_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SMC3_9STRA)

HSP 1 Score: 216 bits (549), Expect = 1.910e-61
Identity = 117/275 (42.55%), Postives = 160/275 (58.18%), Query Frame = 1
Query:    1 TLTLTQYQEAFISAAVDGAFLYDLNDDDLKSSLGVEHRLHRKKILNSILRLKAAE--------------SERIRPVTLKTAVSSRVATGFSPEPLQGNNFGQAPLGDAAEAMGNAVASGREATPVIP--INFKELVVLARRGKYKQIREILDPLPERRFDPGIVRVPYVEDFGTAYLDAYEQEPFNLNKVDNHGNTLLMVAAQNGNIKMAKLFVHKGANPNHQNKQGQTAGHYAVSYQFFDFSEWLFLPGGDGGGADDTLVNKFGLDPYDGLQAE 777
            TL L QY+  F  AA+DG FLYDLNDDDL+++LG+EH LHRKKILNSI RL+  E              +  +  +   T   + V  G +P  +   N   +P+ + A A   A++     T       N ++L  + R GK K+++  L  LP+  FD   V+ PY++ FGT Y +   ++P+ +NK D HGNTL +VAAQNG +K+A+    KGANPNHQN QGQTA HY ++Y F+DF  WL     +G GA+DTL N + L  YDGL  E
Sbjct:  509 TLKLEQYRTCFADAAIDGGFLYDLNDDDLRNTLGIEHNLHRKKILNSITRLRRMEEANSSQNLSNTSLSASTLMNINAATGRQTMVDPGIAPAMISAPNSPGSPVLNVASAPFGAISEDTGITGATSNVANPEKLSSMVRHGKLKELKPALANLPDTHFDENDVQTPYIQGFGTQYSERLNRQPWFINKADEHGNTLFLVAAQNGRLKVAQFLFAKGANPNHQNNQGQTALHYCMNYSFYDFGAWL-TDASEGAGANDTLTNMYDLTCYDGLTPE 782          
BLAST of mRNA_H-paniculata_contig1506.3003.1 vs. uniprot
Match: A0A3R6YCE5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6YCE5_9STRA)

HSP 1 Score: 218 bits (556), Expect = 2.960e-61
Identity = 126/269 (46.84%), Postives = 160/269 (59.48%), Query Frame = 1
Query:    1 TLTLTQYQEAFISAAVDGAFLYDLNDDDLKSSLGVEHRLHRKKILNSILRLKAAESERIRPVTLKTAVSSRVATGFSPEPLQGNNFGQAPL-----------GDAAEAMGNAVA--SGREATPVIPINFKELVVLARRGKYKQIREILDPLPERRFDPGIVRVPYVEDFGTAYLDAYEQEPFNLNKVDNHGNTLLMVAAQNGNIKMAKLFVHKGANPNHQNKQGQTAGHYAVSYQFFDFSEWLFLPGGDGGGADDTLVNKFGLDPYDGL 768
            TL+L QY++AF    VDG+ LYDLND DL+ SLG+E  LHRKKIL ++ RLK AE      V +    SS VA   +  P+Q      +P            G A +A G AV   S  E +P + I F E+  L R GK KQ++E  +  P++ FDP  V+V      GT Y D  E + F++NK D+HGN+LL++AAQN  +K+ +  V KGANPNHQNKQGQTAGHYA++Y FFD   WL  P  D GG  D LVN  GL  YDGL
Sbjct: 2086 TLSLGQYKQAFSDGTVDGSLLYDLNDHDLRYSLGIEFDLHRKKILQAVERLKRAEG-----VVVDKLYSSPVA---ATAPMQAQQTATSPAMTLPSAGTVMNGPAPQAGGGAVPQPSTTEVSPSLVIRFDEICSLVRNGKLKQVKEAFEKWPDKAFDPVSVKVQNAAGVGTVYEDGVEHQAFHMNKTDDHGNSLLLLAAQNNLVKVCQFLVSKGANPNHQNKQGQTAGHYAMAYSFFDLGAWLLDP--DKGGGRDDLVNMHGLTAYDGL 2344          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1506.3003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLW6_ECTSI1.250e-11572.16Response receiver n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A7S3XN59_HETAK2.740e-8956.20Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2B1B5_9STRA9.540e-8552.33Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3ZRA3_9STRA6.210e-8456.70Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A836CMF0_9STRA3.440e-7351.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2LVQ2_9STRA3.330e-6241.87Hypothetical protein n=2 Tax=Skeletonema marinoi T... [more]
A0A485LIE9_9STRA8.510e-6246.55Aste57867_21537 protein n=1 Tax=Aphanomyces stella... [more]
A0A024TK00_9STRA1.530e-6146.84SAM domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A7S2SMC3_9STRA1.910e-6142.55Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A3R6YCE5_9STRA2.960e-6146.84Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1506contigH-paniculata_contig1506:7453..10223 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score379.4
Seed ortholog evalue1.3e-102
Seed eggNOG ortholog2880.D8LLW6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size777
Cds size777
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1506.3003.1prot_H-paniculata_contig1506.3003.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1506 7453..10223 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929207.4874043-CDS-H-paniculata_contig1506:7452..76081622929207.4874043-CDS-H-paniculata_contig1506:7452..7608Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1506 7453..7608 -
1691480770.3866014-CDS-H-paniculata_contig1506:7452..76081691480770.3866014-CDS-H-paniculata_contig1506:7452..7608Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1506 7453..7608 -
1622929207.5090563-CDS-H-paniculata_contig1506:7936..80591622929207.5090563-CDS-H-paniculata_contig1506:7936..8059Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1506 7937..8059 -
1691480770.3980956-CDS-H-paniculata_contig1506:7936..80591691480770.3980956-CDS-H-paniculata_contig1506:7936..8059Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1506 7937..8059 -
1622929207.5232515-CDS-H-paniculata_contig1506:8819..89411622929207.5232515-CDS-H-paniculata_contig1506:8819..8941Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1506 8820..8941 -
1691480770.4110005-CDS-H-paniculata_contig1506:8819..89411691480770.4110005-CDS-H-paniculata_contig1506:8819..8941Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1506 8820..8941 -
1622929207.536286-CDS-H-paniculata_contig1506:9437..96151622929207.536286-CDS-H-paniculata_contig1506:9437..9615Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1506 9438..9615 -
1691480770.4187884-CDS-H-paniculata_contig1506:9437..96151691480770.4187884-CDS-H-paniculata_contig1506:9437..9615Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1506 9438..9615 -
1622929207.5509334-CDS-H-paniculata_contig1506:10025..102231622929207.5509334-CDS-H-paniculata_contig1506:10025..10223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1506 10026..10223 -
1691480770.4262576-CDS-H-paniculata_contig1506:10025..102231691480770.4262576-CDS-H-paniculata_contig1506:10025..10223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1506 10026..10223 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1506.3003.1

>prot_H-paniculata_contig1506.3003.1 ID=prot_H-paniculata_contig1506.3003.1|Name=mRNA_H-paniculata_contig1506.3003.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=259bp
TLTLTQYQEAFISAAVDGAFLYDLNDDDLKSSLGVEHRLHRKKILNSILR
LKAAESERIRPVTLKTAVSSRVATGFSPEPLQGNNFGQAPLGDAAEAMGN
AVASGREATPVIPINFKELVVLARRGKYKQIREILDPLPERRFDPGIVRV
PYVEDFGTAYLDAYEQEPFNLNKVDNHGNTLLMVAAQNGNIKMAKLFVHK
GANPNHQNKQGQTAGHYAVSYQFFDFSEWLFLPGGDGGGADDTLVNKFGL
DPYDGLQAE
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mRNA from alignment at H-paniculata_contig1506:7453..10223-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1506.3003.1 ID=mRNA_H-paniculata_contig1506.3003.1|Name=mRNA_H-paniculata_contig1506.3003.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2771bp|location=Sequence derived from alignment at H-paniculata_contig1506:7453..10223- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTCTCACTTTGACCCAGTACCAAGAGGCATTTATTTCGGCGGCTGTGGA TGGGGCTTTCCTTTACGATCTGAACGACGACGATCTAAAGAGCTCCCTCG GCGTGGAGCACCGGCTGCACCGAAAGAAGATCCTGAATTCCATCCTCAGG CTCAAGGCTGCGGAGTCGGAGAGAATCCGACCGGTAACCCTGAAAACAGT TATTTTTTCGCCGTTTGCTTTTTTGCCTTGCGTCGGGTGTTTGGGGATTT AACTTGATTTTCCAAGCCTTGCGTTTTCGGGCCGACTAAGGGTGGGGGGC GAGATACTCTTCGTGTGCCGTTGGAAGACTCCAGCCACCACGCTAATGTT GTGAGGGATAGTGGCGTATGATATTGTACATCACCGTTACCCACCGTTAC CCCCAAACGCGCCTTGCCATATGGTTGCACAGGAGAAAGAGTCGTCTTTC TTACTAACCAGGTCAACTGTCTTGATCCTCATATTTAGGTTAACTTCATC TACATATCCCTACGCGCCGCACAAACAATTCGCGGCCGAATAAAATATAT CCATCATCGTGTTGAAACCTGTGCCTGTGTGCTGCTGTTGTCGAGAACAT TCAAACAGGCAGTGTCGAGCCGTGTAGCAACGGGCTTCTCCCCCGAGCCA CTTCAAGGTAACAACTTTGGTCAGGCGCCGCTGGGCGATGCAGCTGAAGC TATGGGGAATGCAGTGGCGTCGGGGCGTGAGGCGACCCCCGTCATACCGA TTAATTTCAAGGAGTTGGTGGTGCTCGCACGCCGAGGTATAGCAATAGGG GTGGGAAGGATACACTGATGCGAGCGAATGTTACCGTTGTGTATATTGAA GTCGGTATCCGTGGGCAGGCCAGCGTTTGCAGCTGACTTGCGTGTGTAAA ATAACGCGAAGGAACTTCAATGTTTTGAGCAGGGCGGACACGGGCCGCAC AACTTCACAAGAAGTCCACGTACCCAAAACTATTGATGTGTACATGTGGT GAAGTAAATACCCAGCTTTGCGCTCTCGCATCGCAAATAGTAAAATATTC CTACCATAGAGAATTTTCCGTCGAAAAGCATAGAGTACAGTGCTACGCAA TAGACCTTTGCGAGAGTACGGATCACAAAGATACTAAGTAGAACCTGGTG AGAGAATTGTATAAACCCCATTTTTGCTTGCGTTTGTTTTTAGACCGCAA TTTCTTATGTTACTGCGTAACGAACAGCATCTTTCGTGCTCCCATTTCAT TTCGTTCATACGTTTCACTAACTGTGCATCAGGCAAGTACAAGCAGATCC GGGAGATACTGGATCCTTTGCCAGAGCGCCGGTTTGACCCCGGCATCGTC CGCGTGCCATATGTAGAAGATTTCGGTACTGCATACCTCGACGCCTACGA GCAGGTACCTACTATCATGCATCCAAATATGAGCATCCACGTTAAACTAC TGAATATATCTATATATGTATATATAGAGAGAGAGAGAGATATTCATATT TAATATTTAACTTTCAATATTCAGGATAAATCTTCACTTTAAAAATATAG TTAACTACTCAATACGAATGTCCATATACAGATGGAATGCTCACGCCCAA TGTTAACATGAATATTAACGGCAAAGATTTCGTGGAATCTCTGTTCAGAT GGAATGTTCCGATGGAATTCTCACATTGAAACTGGGGCCATAGTAAAATT CCTTGGACCGATACACGTGAAGCTAACCTTTAACCCAGAACCCCAAGTCG CTATCCCCAGCCCTAAATCAAATCCCGTCAATCCTACTGTGCGCTGGCAA AACTTGGAATTAGAATTTGCATCTGGTGTCCATGGAAGCAAATCGATATT ATTGGACATTCAAATGCTCATATTAAAGTTCGTGTTGAACGTATATTTCA ATGTTCAAGTGGGTATTAATTTATTTTTTCAAATAGGAGTGTCAATACTA TATATGCACCATGGTGACGAGGACAACGTTCCGATGATCTCGCACAGCCT GGCAATTATTCCAAAAAGATTCAAGCCCAGCAAATACAACGCAGTGGCCA TAATTGTCTCTGCCCCGCCCTCACCCCCCCGTACCCCCTAACCTCTCTCC CTCCCTCCTATACACTCTATCTGATGCTCGGAACAATTTTCTCCACCTGC CCTCATGTTTACAGGAACCGTTCAACCTGAACAAGGTCGACAACCATGGC AATACCCTTCTCATGGTGGCCGCGCAAAACGGCAACATCAAGATGGCCAA ACTCTTCGTGCACAAGGGAGCCAATCCCAACCACCAGGTAGCCTTTTCGA GGGAGACTAACCCTTCCAGTACACCCCGTGAAAACAGGACTGGTGGCAGA CACCTTACCACCCCCCCCCCCCCCGCCCCTCCGCTTCCCATGTGCGTGCC AGCCGGTTACATCGAATAGCTACTTCGTTGACCGCTGTAGTAATAAACAG GGTCGATGATGAGGAAAAGGGAGGGCGATTAATCTTGCTTGGGCACACTC ATACTCGCAAACTGCTACCGTCCTCGCCTGTCGAATATACATCGAGCGTG AACTAAGACGATGAAGACTAATAGTCGCTGTTGTTGCTTTACACCCGAAA TACCTTCGTCTGCAGAATAAACAAGGGCAGACGGCCGGCCACTACGCGGT GAGCTACCAGTTCTTCGATTTCAGCGAGTGGCTCTTCCTGCCAGGCGGAG ACGGGGGCGGCGCCGATGACACACTCGTGAACAAGTTTGGACTGGACCCT TATGATGGGCTCCAGGCGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1506:7453..10223-

>mRNA_H-paniculata_contig1506.3003.1 ID=mRNA_H-paniculata_contig1506.3003.1|Name=mRNA_H-paniculata_contig1506.3003.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1554bp|location=Sequence derived from alignment at H-paniculata_contig1506:7453..10223- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTCTCACTTTGACCCAGTACCAAGAGGCATTTATTTCGGCGGCTGTGGA
TGGGGCTTTCCTTTACGATCTGAACGACGACGATCTAAAGAGCTCCCTCG
GCGTGGAGCACCGGCTGCACCGAAAGAAGATCCTGAATTCCATCCTCAGG
CTCAAGGCTGCGGAGTCGGAGAGAATCCGACCGGTAACCCTGAAAACAAC
TCTCACTTTGACCCAGTACCAAGAGGCATTTATTTCGGCGGCTGTGGATG
GGGCTTTCCTTTACGATCTGAACGACGACGATCTAAAGAGCTCCCTCGGC
GTGGAGCACCGGCTGCACCGAAAGAAGATCCTGAATTCCATCCTCAGGCT
CAAGGCTGCGGAGTCGGAGAGAATCCGACCGGTAACCCTGAAAACAGCAG
TGTCGAGCCGTGTAGCAACGGGCTTCTCCCCCGAGCCACTTCAAGGTAAC
AACTTTGGTCAGGCGCCGCTGGGCGATGCAGCTGAAGCTATGGGGAATGC
AGTGGCGTCGGGGCGTGAGGCGACCCCCGTCATACCGATTAATTTCAAGG
AGTTGGTGGTGCTCGCACGCCGAGGCAGTGTCGAGCCGTGTAGCAACGGG
CTTCTCCCCCGAGCCACTTCAAGGTAACAACTTTGGTCAGGCGCCGCTGG
GCGATGCAGCTGAAGCTATGGGGAATGCAGTGGCGTCGGGGCGTGAGGCG
ACCCCCGTCATACCGATTAATTTCAAGGAGTTGGTGGTGCTCGCACGCCG
AGGCAAGTACAAGCAGATCCGGGAGATACTGGATCCTTTGCCAGAGCGCC
GGTTTGACCCCGGCATCGTCCGCGTGCCATATGTAGAAGATTTCGGTACT
GCATACCTCGACGCCTACGAGCAGGCAAGTACAAGCAGATCCGGGAGATA
CTGGATCCTTTGCCAGAGCGCCGGTTTGACCCCGGCATCGTCCGCGTGCC
ATATGTAGAAGATTTCGGTACTGCATACCTCGACGCCTACGAGCAGGAAC
CGTTCAACCTGAACAAGGTCGACAACCATGGCAATACCCTTCTCATGGTG
GCCGCGCAAAACGGCAACATCAAGATGGCCAAACTCTTCGTGCACAAGGG
AGCCAATCCCAACCACCAGGAACCGTTCAACCTGAACAAGGTCGACAACC
ATGGCAATACCCTTCTCATGGTGGCCGCGCAAAACGGCAACATCAAGATG
GCCAAACTCTTCGTGCACAAGGGAGCCAATCCCAACCACCAGAATAAACA
AGGGCAGACGGCCGGCCACTACGCGGTGAGCTACCAGTTCTTCGATTTCA
GCGAGTGGCTCTTCCTGCCAGGCGGAGACGGGGGCGGCGCCGATGACACA
CTCGTGAACAAGTTTGGACTGGACCCTTATGATGGGCTCCAGGCGGAGAA
TAAACAAGGGCAGACGGCCGGCCACTACGCGGTGAGCTACCAGTTCTTCG
ATTTCAGCGAGTGGCTCTTCCTGCCAGGCGGAGACGGGGGCGGCGCCGAT
GACACACTCGTGAACAAGTTTGGACTGGACCCTTATGATGGGCTCCAGGC
GGAG
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