mRNA_H-paniculata_contig1506.3002.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1506.3002.1
Unique NamemRNA_H-paniculata_contig1506.3002.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1506.3002.1 vs. uniprot
Match: A0A0A9E0V2_ARUDO (Uncharacterized protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9E0V2_ARUDO)

HSP 1 Score: 56.6 bits (135), Expect = 1.340e-7
Identity = 23/32 (71.88%), Postives = 27/32 (84.38%), Query Frame = 3 
Query:  414 INPLLVGFGQQVCSAISPSCSICGINDICPSA 509
            INPLLVGFGQ +C+ + P C ICGIN+ICPSA
Sbjct:   15 INPLLVGFGQTICTPLRPKCDICGINNICPSA 46
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BLAST of mRNA_H-paniculata_contig1506.3002.1 vs. uniprot
Match: D7FTS9_ECTSI (Endonuclease III homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTS9_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 8.910e-7
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 3 
Query:  408 SEINPLLVGFGQQVCSAISPSCSICGINDICPSAETK*ELS 530
            SE+N LLVGFGQQVC A  PSCS CGI+ +CPSA+   +L+
Sbjct:  244 SEVNELLVGFGQQVCFATRPSCSACGISGLCPSADRHGDLA 284
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BLAST of mRNA_H-paniculata_contig1506.3002.1 vs. uniprot
Match: A0A0K9P5Z3_ZOSMR (Endonuclease III homolog n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9P5Z3_ZOSMR)

HSP 1 Score: 58.5 bits (140), Expect = 1.180e-6
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 3 
Query:  414 INPLLVGFGQQVCSAISPSCSICGINDICPSA 509
            INPLLVGFGQ +C+ I P C ICGIND+CPSA
Sbjct:  337 INPLLVGFGQTICAPIKPQCRICGINDLCPSA 368
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BLAST of mRNA_H-paniculata_contig1506.3002.1 vs. uniprot
Match: A0A1U7Z5L3_NELNU (Endonuclease III homolog n=3 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U7Z5L3_NELNU)

HSP 1 Score: 57.4 bits (137), Expect = 2.050e-6
Identity = 23/32 (71.88%), Postives = 27/32 (84.38%), Query Frame = 3 
Query:  414 INPLLVGFGQQVCSAISPSCSICGINDICPSA 509
            INPLLVGFGQ +C+ + P C ICGIND+CPSA
Sbjct:  221 INPLLVGFGQTICTPLRPHCEICGINDLCPSA 252
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BLAST of mRNA_H-paniculata_contig1506.3002.1 vs. uniprot
Match: A0A0E0MEL4_ORYPU (Endonuclease III homolog n=3 Tax=Oryza punctata TaxID=4537 RepID=A0A0E0MEL4_ORYPU)

HSP 1 Score: 57.8 bits (138), Expect = 2.460e-6
Identity = 28/49 (57.14%), Postives = 34/49 (69.39%), Query Frame = 3 
Query:  414 INPLLVGFGQQVCSAISPSCSICGINDICPSAETK*ELSWRNPQAHVIS 560
            INPLLVGFGQ +C+ + P C +CGIN+ICPSA    E S  NP+   IS
Sbjct:  310 INPLLVGFGQTICTPLRPKCDMCGINNICPSAFK--ESSSPNPKQKKIS 356
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BLAST of mRNA_H-paniculata_contig1506.3002.1 vs. uniprot
Match: A0A7J6XG56_THATH (Endonuclease iii-like protein n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6XG56_THATH)

HSP 1 Score: 54.7 bits (130), Expect = 2.820e-6
Identity = 23/32 (71.88%), Postives = 26/32 (81.25%), Query Frame = 3 
Query:  414 INPLLVGFGQQVCSAISPSCSICGINDICPSA 509
            INPLLVGFGQ VC+ + PSC IC IN +CPSA
Sbjct:   66 INPLLVGFGQTVCTPLRPSCGICNINHLCPSA 97
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BLAST of mRNA_H-paniculata_contig1506.3002.1 vs. uniprot
Match: UPI001CB99103 (endonuclease III homolog 1, chloroplastic-like isoform X1 n=2 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB99103)

HSP 1 Score: 56.6 bits (135), Expect = 5.100e-6
Identity = 23/32 (71.88%), Postives = 28/32 (87.50%), Query Frame = 3 
Query:  414 INPLLVGFGQQVCSAISPSCSICGINDICPSA 509
            INPLLVGFGQ +C+ + PSCS CGIN++CPSA
Sbjct:  310 INPLLVGFGQTICTPLRPSCSQCGINELCPSA 341
[Close]
BLAST of mRNA_H-paniculata_contig1506.3002.1 vs. uniprot
Match: A0A834YRF7_9MAGN (ENDO3c domain-containing protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A834YRF7_9MAGN)

HSP 1 Score: 56.6 bits (135), Expect = 5.700e-6
Identity = 23/32 (71.88%), Postives = 27/32 (84.38%), Query Frame = 3 
Query:  414 INPLLVGFGQQVCSAISPSCSICGINDICPSA 509
            INPLLVGFGQ VC+ + P C +CGIND+CPSA
Sbjct:  389 INPLLVGFGQTVCTPLRPRCGMCGINDLCPSA 420
[Close]
BLAST of mRNA_H-paniculata_contig1506.3002.1 vs. uniprot
Match: A0A0D9XR50_9ORYZ (Endonuclease III homolog n=12 Tax=Oryzinae TaxID=1648021 RepID=A0A0D9XR50_9ORYZ)

HSP 1 Score: 56.2 bits (134), Expect = 6.540e-6
Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = 3 
Query:  414 INPLLVGFGQQVCSAISPSCSICGINDICPSAETK*ELSWRNPQAHVI 557
            INPLLVGFGQ +C+ + P C +CGIN+ICPSA    E S  NP+   I
Sbjct:  283 INPLLVGFGQTICTPLRPKCDMCGINNICPSAFK--ESSSPNPKQKKI 328
[Close]
BLAST of mRNA_H-paniculata_contig1506.3002.1 vs. uniprot
Match: A0A2J6L849_LACSA (Endonuclease III homolog n=4 Tax=Lactuca TaxID=4235 RepID=A0A2J6L849_LACSA)

HSP 1 Score: 56.2 bits (134), Expect = 6.620e-6
Identity = 22/32 (68.75%), Postives = 28/32 (87.50%), Query Frame = 3 
Query:  414 INPLLVGFGQQVCSAISPSCSICGINDICPSA 509
            INPLLVGFGQ VC+ + PSCS+C +N++CPSA
Sbjct:  285 INPLLVGFGQTVCTPLRPSCSLCSVNELCPSA 316
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1506.3002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0A9E0V2_ARUDO1.340e-771.88Uncharacterized protein n=1 Tax=Arundo donax TaxID... [more]
D7FTS9_ECTSI8.910e-763.41Endonuclease III homolog n=1 Tax=Ectocarpus silicu... [more]
A0A0K9P5Z3_ZOSMR1.180e-675.00Endonuclease III homolog n=1 Tax=Zostera marina Ta... [more]
A0A1U7Z5L3_NELNU2.050e-671.88Endonuclease III homolog n=3 Tax=Nelumbo nucifera ... [more]
A0A0E0MEL4_ORYPU2.460e-657.14Endonuclease III homolog n=3 Tax=Oryza punctata Ta... [more]
A0A7J6XG56_THATH2.820e-671.88Endonuclease iii-like protein n=1 Tax=Thalictrum t... [more]
UPI001CB991035.100e-671.88endonuclease III homolog 1, chloroplastic-like iso... [more]
A0A834YRF7_9MAGN5.700e-671.88ENDO3c domain-containing protein n=1 Tax=Tetracent... [more]
A0A0D9XR50_9ORYZ6.540e-656.25Endonuclease III homolog n=12 Tax=Oryzinae TaxID=1... [more]
A0A2J6L849_LACSA6.620e-668.75Endonuclease III homolog n=4 Tax=Lactuca TaxID=423... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1506contigH-paniculata_contig1506:5893..6509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size617
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1506.3002.1prot_H-paniculata_contig1506.3002.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1506 5929..6324 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929207.3897986-UTR-H-paniculata_contig1506:5892..59281622929207.3897986-UTR-H-paniculata_contig1506:5892..5928Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1506 5893..5928 +
1691480770.361786-UTR-H-paniculata_contig1506:5892..59281691480770.361786-UTR-H-paniculata_contig1506:5892..5928Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1506 5893..5928 +
1622929207.432387-UTR-H-paniculata_contig1506:6324..65091622929207.432387-UTR-H-paniculata_contig1506:6324..6509Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1506 6325..6509 +
1691480770.3775322-UTR-H-paniculata_contig1506:6324..65091691480770.3775322-UTR-H-paniculata_contig1506:6324..6509Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1506 6325..6509 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929207.4075947-CDS-H-paniculata_contig1506:5928..63241622929207.4075947-CDS-H-paniculata_contig1506:5928..6324Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1506 5929..6324 +
1691480770.3697548-CDS-H-paniculata_contig1506:5928..63241691480770.3697548-CDS-H-paniculata_contig1506:5928..6324Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1506 5929..6324 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1506.3002.1

>prot_H-paniculata_contig1506.3002.1 ID=prot_H-paniculata_contig1506.3002.1|Name=mRNA_H-paniculata_contig1506.3002.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
MCSDACTHGFTQGIIAYVRTNNGFSSHTKYDEYFVSPVPNRSSQSCGWLL
KFGEGSWSPFRLPSRVLFTPLGEVIIALNLKFRICQLPREVSLLGFSFAI
LLCGRQPPSSSSLSSLMFHFFLTGRKSIRCS*
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mRNA from alignment at H-paniculata_contig1506:5893..6509+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1506.3002.1 ID=mRNA_H-paniculata_contig1506.3002.1|Name=mRNA_H-paniculata_contig1506.3002.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=617bp|location=Sequence derived from alignment at H-paniculata_contig1506:5893..6509+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGTCGGTCCATTAGACACGGCACCGCGTGTATGTTATGTGTTCTGACGC
ATGTACGCATGGTTTTACTCAGGGCATTATCGCATACGTCCGTACCAACA
ACGGTTTCTCGTCACACACAAAATATGACGAGTATTTTGTATCTCCGGTC
CCAAACCGATCCTCCCAGAGTTGCGGGTGGTTGTTGAAATTTGGGGAAGG
TTCGTGGTCACCTTTCCGTTTGCCGAGTAGGGTTTTGTTCACTCCTCTCG
GCGAGGTCATAATCGCTTTAAATTTGAAGTTTCGAATCTGCCAGCTGCCG
CGAGAGGTTTCTCTGCTCGGCTTTTCGTTTGCAATTTTGCTGTGCGGAAG
ACAACCACCCTCGTCCTCGTCCCTGTCCTCGTTGATGTTTCACTTTTTTC
TTACAGGTCGGAAATCAATCCGCTGCTCGTAGGCTTCGGGCAGCAAGTGT
GTTCAGCAATATCACCGTCATGTTCGATTTGTGGCATCAATGACATATGC
CCCTCTGCCGAGACGAAATGAGAGCTATCATGGCGGAATCCGCAGGCACA
CGTAATTAGTGACTAGTATGCAAACACAGACCAACACTATCGCGGTGTTC
GGTTTTCACATTTATAC
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Coding sequence (CDS) from alignment at H-paniculata_contig1506:5893..6509+

>mRNA_H-paniculata_contig1506.3002.1 ID=mRNA_H-paniculata_contig1506.3002.1|Name=mRNA_H-paniculata_contig1506.3002.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig1506:5893..6509+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTTCTGACGCATGTACGCATGGTTTTACTCAGGGCATTATCGCATA
CGTCCGTACCAACAACGGTTTCTCGTCACACACAAAATATGACGAGTATT
TTGTATCTCCGGTCCCAAACCGATCCTCCCAGAGTTGCGGGTGGTTGTTG
AAATTTGGGGAAGGTTCGTGGTCACCTTTCCGTTTGCCGAGTAGGGTTTT
GTTCACTCCTCTCGGCGAGGTCATAATCGCTTTAAATTTGAAGTTTCGAA
TCTGCCAGCTGCCGCGAGAGGTTTCTCTGCTCGGCTTTTCGTTTGCAATT
TTGCTGTGCGGAAGACAACCACCCTCGTCCTCGTCCCTGTCCTCGTTGAT
GTTTCACTTTTTTCTTACAGGTCGGAAATCAATCCGCTGCTCGTAGATGT
GTTCTGACGCATGTACGCATGGTTTTACTCAGGGCATTATCGCATACGTC
CGTACCAACAACGGTTTCTCGTCACACACAAAATATGACGAGTATTTTGT
ATCTCCGGTCCCAAACCGATCCTCCCAGAGTTGCGGGTGGTTGTTGAAAT
TTGGGGAAGGTTCGTGGTCACCTTTCCGTTTGCCGAGTAGGGTTTTGTTC
ACTCCTCTCGGCGAGGTCATAATCGCTTTAAATTTGAAGTTTCGAATCTG
CCAGCTGCCGCGAGAGGTTTCTCTGCTCGGCTTTTCGTTTGCAATTTTGC
TGTGCGGAAGACAACCACCCTCGTCCTCGTCCCTGTCCTCGTTGATGTTT
CACTTTTTTCTTACAGGTCGGAAATCAATCCGCTGCTCGTAG
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