mRNA_H-paniculata_contig15058.3001.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15058.3001.1
Unique NamemRNA_H-paniculata_contig15058.3001.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15058.3001.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.840e-15
Identity = 34/73 (46.58%), Postives = 48/73 (65.75%), Query Frame = 2 
Query:    5 GSTDVTHIGWSYTPASHTHLYTGKEGFRTLAYEATVDHSRPVFGMTKGMAGAVNDESLTRFDKTVQAVQVDGL 223
            GSTDVTHI W   P +    YTGKEG+ T+AY+ TVDH++ V  +T G  G+ ND+S+ R+D  V  ++ D +
Sbjct:  231 GSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPI 303
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BLAST of mRNA_H-paniculata_contig15058.3001.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 6.790e-13
Identity = 32/72 (44.44%), Postives = 47/72 (65.28%), Query Frame = 2 
Query:    2 VGSTDVTHIGWSYTPASHTHLYTGKEGFRTLAYEATVDHSRPVFGMTKGMAGAVNDESLTRFDKTVQAVQVD 217
            +GSTDVTHIGWS  P +    YTGKEG  T+ Y+ TV+H+  V  +T+G  G+ ND+++   D+ V  ++ D
Sbjct:  201 MGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTD 272
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BLAST of mRNA_H-paniculata_contig15058.3001.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 5.220e-11
Identity = 31/72 (43.06%), Postives = 44/72 (61.11%), Query Frame = 2 
Query:    2 VGSTDVTHIGWSYTPASHTHLYTGKEGFRTLAYEATVDHSRPVFGMTKGMAGAVNDESLTRFDKTVQAVQVD 217
            V S D THI W   P S T+ + GKEG+ TL YEA+ DHS  +   TKG  GA ND+++ + D +V  ++ +
Sbjct:  184 VASVDCTHISWPACPFSETNTHKGKEGYTTLVYEASCDHSGRILSSTKGFPGAENDKTVVKRDLSVLRMREE 255
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BLAST of mRNA_H-paniculata_contig15058.3001.1 vs. uniprot
Match: A0A6H5K8G0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8G0_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 2.240e-9
Identity = 30/72 (41.67%), Postives = 43/72 (59.72%), Query Frame = 2 
Query:    2 VGSTDVTHIGWSYTPASHTHLYTGKEGFRTLAYEATVDHSRPVFGMTKGMAGAVNDESLTRFDKTVQAVQVD 217
            V S D THI     P S T+ + GKEG+ TL YEA+ DHS  +   TKG  GA ND+++ + D +V  ++ +
Sbjct:  172 VASVDCTHISLPACPFSETNTHKGKEGYTTLVYEASCDHSGRILSSTKGFPGAENDKTVVKRDLSVLRMREE 243
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BLAST of mRNA_H-paniculata_contig15058.3001.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 3.880e-9
Identity = 25/60 (41.67%), Postives = 39/60 (65.00%), Query Frame = 2 
Query:   44 PASHTHLYTGKEGFRTLAYEATVDHSRPVFGMTKGMAGAVNDESLTRFDKTVQAVQVDGL 223
            P +    YTGKEG+ T+AY+ TVDH++ V  +T G  G+ ND+S+ R+D  V  ++ D +
Sbjct:    3 PYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPI 62
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BLAST of mRNA_H-paniculata_contig15058.3001.1 vs. uniprot
Match: A0A7S2W9F9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W9F9_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 5.910e-9
Identity = 26/62 (41.94%), Postives = 38/62 (61.29%), Query Frame = 2 
Query:    5 GSTDVTHIGWSYTPASHTHLYTGKEGFRTLAYEATVDHSRPVFGMTKGMAGAVNDESLTRFD 190
            GS +V H GW   P+  THL+ GKEGF T+A++  V H + V  ++ G  GA ND+ + + D
Sbjct:  107 GSMEVVHRGWDKCPSEFTHLFKGKEGFPTVAFQVIVTHRKKVLHVSLGYPGARNDKQIVKVD 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15058.3001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JAU4_9PHAE1.840e-1546.58Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBE2_9PHAE6.790e-1344.44Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV45_9PHAE5.220e-1143.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8G0_9PHAE2.240e-941.67DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JTC6_9PHAE3.880e-941.67DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S2W9F9_9STRA5.910e-941.94Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15058contigH-paniculata_contig15058:3345..4298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size352
Cds size183
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15058.3001.1prot_H-paniculata_contig15058.3001.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15058 3512..4298 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929207.2159314-UTR-H-paniculata_contig15058:3344..35111622929207.2159314-UTR-H-paniculata_contig15058:3344..3511Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15058 3345..3511 +
1691480770.3298059-UTR-H-paniculata_contig15058:3344..35111691480770.3298059-UTR-H-paniculata_contig15058:3344..3511Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15058 3345..3511 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929207.2280889-CDS-H-paniculata_contig15058:3511..36431622929207.2280889-CDS-H-paniculata_contig15058:3511..3643Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15058 3512..3643 +
1691480770.344336-CDS-H-paniculata_contig15058:3511..36431691480770.344336-CDS-H-paniculata_contig15058:3511..3643Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15058 3512..3643 +
1622929207.2634127-CDS-H-paniculata_contig15058:4247..42981622929207.2634127-CDS-H-paniculata_contig15058:4247..4298Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15058 4248..4298 +
1691480770.352157-CDS-H-paniculata_contig15058:4247..42981691480770.352157-CDS-H-paniculata_contig15058:4247..4298Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15058 4248..4298 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15058.3001.1

>prot_H-paniculata_contig15058.3001.1 ID=prot_H-paniculata_contig15058.3001.1|Name=mRNA_H-paniculata_contig15058.3001.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
MNPSLVSTRQFKPYRSMAYKLRDRDGVKQVKKGLYLIVDGEYHGSRSLVC
CNSRGISVEYT
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mRNA from alignment at H-paniculata_contig15058:3345..4298+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15058.3001.1 ID=mRNA_H-paniculata_contig15058.3001.1|Name=mRNA_H-paniculata_contig15058.3001.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=954bp|location=Sequence derived from alignment at H-paniculata_contig15058:3345..4298+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTAGGTTCGACTGATGTCACCCACATTGGATGGAGTTACACCCCGGCAT
CGCATACCCATCTCTACACGGGCAAGGAAGGATTCCGGACTCTCGCATAC
GAGGCAACGGTAGACCACTCGAGGCCGGTATTTGGAATGACGAAGGGAAT
GGCCGGAGCAGTGAACGATGAATCCCTCACTCGTTTCGACAAGACAGTTC
AAGCCGTACAGGTCGATGGCTTACAAGCTCCGCGATAGGGACGGCGTGAA
ACAGGTGAAGAAGGGCCTTTACCTCATCGTCGACGGAGAATATCACGGGG
TGAGTCACCTGCTGTTGTTTGATGGTCATTGCTACTGCATCACTCTACGG
AAACGCGTTGCATACTTTGACGTTATGCGGCGACAATTCCTTCGTTTCTG
ACAAGCATACCCCGTTTAGTGTTGTGTTTCAACCGCACCCCACCTCCGAT
GTACGACTTTGTTGCCCAACGTAAACGGCTGCCCGACGTCCCACTTTGTG
ACCCACAACTCTAGACTCACCGGATATTTGTTTCAAATGTTACCACTGGA
CGAGGTGCAAACTATGAGACAGCAGGCTTCCTGGACATAAGTAGCGGCTA
CGCGAAATCCGTAGGTCGTACGACGTGGCGTATCTCGTTTAAAGCGCAGG
CCATGCCACCGTTGACAAGGACTTTGCTAGGATGATAAGACGCTTATGTG
TCTTTTTTTATTGTCGATTTCAACCGTCGGTGTTGTTGATGTCGTCTTCA
GCTTCAATTTCCTCCGTACCGCTGAGTGATCAAGGATTAAGGCTGAGGTA
AATCGTATAAGCCGGGCGTTTCAACATCTGACACGGTTGGCCAGATGCCG
AATAAGAACAACGTGTATCGACACTGTTTTCTCGTTTCCCCTCTTATTTG
CAGTCGAGGAGTCTAGTGTGCTGCAACTCGAGAGGAATTAGCGTGGAGTA
CACG
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Coding sequence (CDS) from alignment at H-paniculata_contig15058:3345..4298+

>mRNA_H-paniculata_contig15058.3001.1 ID=mRNA_H-paniculata_contig15058.3001.1|Name=mRNA_H-paniculata_contig15058.3001.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig15058:3345..4298+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATCCCTCACTCGTTTCGACAAGACAGTTCAAGCCGTACAGGTCGAT
GGCTTACAAGCTCCGCGATAGGGACGGCGTGAAACAGGTGAAGAAGGGCC
TTTACCTCATCGTCGACGGAGAATATCACGGGATGAATCCCTCACTCGTT
TCGACAAGACAGTTCAAGCCGTACAGGTCGATGGCTTACAAGCTCCGCGA
TAGGGACGGCGTGAAACAGGTGAAGAAGGGCCTTTACCTCATCGTCGACG
GAGAATATCACGGGTCGAGGAGTCTAGTGTGCTGCAACTCGAGAGGAATT
AGCGTGGAGTACACGTCGAGGAGTCTAGTGTGCTGCAACTCGAGAGGAAT
TAGCGTGGAGTACACG
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