mRNA_H-paniculata_contig15051.3000.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15051.3000.1
Unique NamemRNA_H-paniculata_contig15051.3000.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15051.3000.1 vs. uniprot
Match: D8LRP9_ECTSI (Ribonuclease n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRP9_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 3.140e-34
Identity = 61/70 (87.14%), Postives = 66/70 (94.29%), Query Frame = 1 
Query:    1 TPQVGWVLRLISARELSDKMCRKTPFSLNVISHDAAAEMIRAVQTRGVMVTKVFVDTVGDPGFYQSKLEK 210
            TP+VGWVLRLISARELSDKMCRK P+SLNVISHDAAAE+IRAVQ RGV VT+V+VDTVGDP FYQSKLEK
Sbjct:  107 TPEVGWVLRLISARELSDKMCRKVPYSLNVISHDAAAELIRAVQARGVKVTQVYVDTVGDPAFYQSKLEK 176
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BLAST of mRNA_H-paniculata_contig15051.3000.1 vs. uniprot
Match: A0A6V1NB11_HETAK (Ribonuclease n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NB11_HETAK)

HSP 1 Score: 85.5 bits (210), Expect = 2.550e-18
Identity = 40/70 (57.14%), Postives = 52/70 (74.29%), Query Frame = 1 
Query:    1 TPQVGWVLRLISARELSDKMCRKTPFSLNVISHDAAAEMIRAVQTRGVMVTKVFVDTVGDPGFYQSKLEK 210
            TP VGWV+R ISA E+S++M RK P SLN+IS+ AA +MI+     GV +TKV+VDTVGDP  YQ +L +
Sbjct:   92 TPSVGWVIRSISAEEISNQMLRKVPVSLNIISYAAAMQMIQTALDDGVNITKVYVDTVGDPAAYQERLTR 161
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BLAST of mRNA_H-paniculata_contig15051.3000.1 vs. uniprot
Match: A0A5D6XNI5_9STRA (Ribonuclease n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XNI5_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.940e-17
Identity = 43/70 (61.43%), Postives = 56/70 (80.00%), Query Frame = 1 
Query:    1 TPQVGWVLRLISARELSDKMCRKTPFSLNVISHDAAAEMIRAVQTRGVMVTKVFVDTVGDPGFYQSKLEK 210
            T Q+GWV+RLISA+E+SDKM R+T  +LN +S +AA +MIRA Q +GV VT V+VDTVGDP +YQ+ L K
Sbjct:   92 TDQLGWVVRLISAQEISDKMQRQTS-NLNEMSRNAAIQMIRATQAKGVNVTHVYVDTVGDPKWYQTFLTK 160
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BLAST of mRNA_H-paniculata_contig15051.3000.1 vs. uniprot
Match: A0A3M6V9E7_9STRA (Ribonuclease n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V9E7_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 3.390e-17
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:    1 TPQVGWVLRLISARELSDKMCRKTPFSLNVISHDAAAEMIRAVQTRGVMVTKVFVDTVGDPGFYQSKLEK 210
            T  +GW++RLISA E+SDKM R+T  +LN IS DAA ++I  VQ +G +V KVFVDTVGDP +YQS L K
Sbjct:   83 TESLGWIVRLISAAEISDKMQRQTS-NLNEISRDAAIQLINEVQKKGAVVKKVFVDTVGDPRWYQSFLTK 151
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BLAST of mRNA_H-paniculata_contig15051.3000.1 vs. uniprot
Match: A0A0P1A837_PLAHL (Ribonuclease n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A837_PLAHL)

HSP 1 Score: 82.0 bits (201), Expect = 1.370e-16
Identity = 43/70 (61.43%), Postives = 55/70 (78.57%), Query Frame = 1 
Query:    1 TPQVGWVLRLISARELSDKMCRKTPFSLNVISHDAAAEMIRAVQTRGVMVTKVFVDTVGDPGFYQSKLEK 210
            T  +GW++RLISA E+SDKM R+T  +LN IS +AA ++IR VQ +GV+V KVFVDTVGDP +YQS L K
Sbjct:   84 TTGLGWIVRLISAAEISDKMQRQTS-NLNEISRNAAIQLIREVQKKGVVVKKVFVDTVGDPRWYQSFLTK 152
[Close]
BLAST of mRNA_H-paniculata_contig15051.3000.1 vs. uniprot
Match: A0A484DZ38_BRELC (Ribonuclease n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DZ38_BRELC)

HSP 1 Score: 80.1 bits (196), Expect = 2.520e-16
Identity = 40/70 (57.14%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:    1 TPQVGWVLRLISARELSDKMCRKTPFSLNVISHDAAAEMIRAVQTRGVMVTKVFVDTVGDPGFYQSKLEK 210
            T  +GW++RLISA E+SDKM R+T  +LN +S DAA ++I  +Q +GV+V KVFVDTVGDP +YQ+ L K
Sbjct:   84 TEDLGWIVRLISAAEISDKMQRQTR-NLNEMSRDAAIQLINEIQKKGVLVKKVFVDTVGDPRWYQNFLTK 152
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BLAST of mRNA_H-paniculata_contig15051.3000.1 vs. uniprot
Match: A0A6A3Y691_9STRA (Ribonuclease n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Y691_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 3.550e-16
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:    1 TPQVGWVLRLISARELSDKMCRKTPFSLNVISHDAAAEMIRAVQTRGVMVTKVFVDTVGDPGFYQSKLEK 210
            T  +GW++RLISA E+SDKM R+T  +LN IS DAA ++I  VQ +G +V KVFVDTVGDP +YQS L K
Sbjct:   83 TEGLGWIVRLISAVEISDKMQRQTS-NLNEISRDAAIQLINEVQKKGTVVKKVFVDTVGDPRWYQSFLTK 151
[Close]
BLAST of mRNA_H-paniculata_contig15051.3000.1 vs. uniprot
Match: A0A835YL34_9STRA (Ribonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL34_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 3.710e-16
Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = 1 
Query:    7 QVGWVLRLISARELSDKMCRKTPFSLNVISHDAAAEMIRAVQTRGVMVTKVFVDTVGDPGFYQSKLEK 210
            ++GWVLR++ ARELS +M R+ P SLN ISH AAAEMIR    R V +T V+VDTVGDP  Y   L +
Sbjct:   58 RIGWVLRVLGARELSARMLRRAPHSLNAISHAAAAEMIRHALGRAVALTHVYVDTVGDPDNYARALRR 125
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BLAST of mRNA_H-paniculata_contig15051.3000.1 vs. uniprot
Match: A0A081AN68_PHYPR (Ribonuclease n=1 Tax=Phytophthora parasitica P1976 TaxID=1317066 RepID=A0A081AN68_PHYPR)

HSP 1 Score: 78.2 bits (191), Expect = 4.400e-16
Identity = 40/70 (57.14%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:    1 TPQVGWVLRLISARELSDKMCRKTPFSLNVISHDAAAEMIRAVQTRGVMVTKVFVDTVGDPGFYQSKLEK 210
            T  +GW++RLISA E+SDKM R+T  +LN +S DAA ++I  VQ +G +V KVFVDTVGDP +YQ+ L K
Sbjct:   85 TEGLGWIVRLISAAEISDKMQRQTS-NLNEMSRDAAIQLINEVQKKGAVVKKVFVDTVGDPRWYQTFLTK 153
[Close]
BLAST of mRNA_H-paniculata_contig15051.3000.1 vs. uniprot
Match: A0A8J5M4W1_9STRA (Ribonuclease n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5M4W1_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 4.760e-16
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:    1 TPQVGWVLRLISARELSDKMCRKTPFSLNVISHDAAAEMIRAVQTRGVMVTKVFVDTVGDPGFYQSKLEK 210
            T  +GW++RLISA E+SDKM R+T  +LN IS DAA ++I  VQ +G +V KVFVDTVGDP +YQS L K
Sbjct:   84 TEGLGWIVRLISAAEISDKMQRQTS-NLNEISRDAAIQLINEVQKKGAVVKKVFVDTVGDPRWYQSFLTK 152
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15051.3000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRP9_ECTSI3.140e-3487.14Ribonuclease n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A6V1NB11_HETAK2.550e-1857.14Ribonuclease n=1 Tax=Heterosigma akashiwo TaxID=28... [more]
A0A5D6XNI5_9STRA1.940e-1761.43Ribonuclease n=1 Tax=Pythium brassicum TaxID=14850... [more]
A0A3M6V9E7_9STRA3.390e-1760.00Ribonuclease n=1 Tax=Peronospora effusa TaxID=5428... [more]
A0A0P1A837_PLAHL1.370e-1661.43Ribonuclease n=1 Tax=Plasmopara halstedii TaxID=47... [more]
A0A484DZ38_BRELC2.520e-1657.14Ribonuclease n=1 Tax=Bremia lactucae TaxID=4779 Re... [more]
A0A6A3Y691_9STRA3.550e-1660.00Ribonuclease n=3 Tax=Phytophthora TaxID=4783 RepID... [more]
A0A835YL34_9STRA3.710e-1657.35Ribonuclease n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A081AN68_PHYPR4.400e-1657.14Ribonuclease n=1 Tax=Phytophthora parasitica P1976... [more]
A0A8J5M4W1_9STRA4.760e-1660.00Ribonuclease n=1 Tax=Phytophthora aleatoria TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15051contigH-paniculata_contig15051:889..1101 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.9
Seed ortholog evalue1.9e-27
Seed eggNOG ortholog2880.D8LRP9
KEGG koko:K06618,ko:K10743
KEGG Pathwayko01522,ko03030,ko04110,ko04218,ko04934,ko05161,ko05165,ko05166,ko05167,ko05169,ko05200,ko05203,ko05212,ko05214,ko05215,ko05218,ko05219,ko05220,ko05222,ko05223,ko05224,ko05225,ko05226,map01522,map03030,map04110,map04218,map04934,map05161,map05165,map05166,map05167,map05169,map05200,map05203,map05212,map05214,map05215,map05218,map05219,map05220,map05222,map05223,map05224,map05225,map05226
KEGG ModuleM00692
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576
EggNOG free text desc.RNA-DNA hybrid ribonuclease activity
EggNOG OGsCOG0164@1,KOG2299@2759
EC3.1.26.4
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03000,ko03032
Exons1
Model size213
Cds size213
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929207.1554215-CDS-H-paniculata_contig15051:888..11011622929207.1554215-CDS-H-paniculata_contig15051:888..1101Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15051 889..1101 -
1691480770.3162642-CDS-H-paniculata_contig15051:888..11011691480770.3162642-CDS-H-paniculata_contig15051:888..1101Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15051 889..1101 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15051.3000.1prot_H-paniculata_contig15051.3000.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15051 889..1101 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15051.3000.1

>prot_H-paniculata_contig15051.3000.1 ID=prot_H-paniculata_contig15051.3000.1|Name=mRNA_H-paniculata_contig15051.3000.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
TPQVGWVLRLISARELSDKMCRKTPFSLNVISHDAAAEMIRAVQTRGVMV
TKVFVDTVGDPGFYQSKLEK*
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mRNA from alignment at H-paniculata_contig15051:889..1101-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15051.3000.1 ID=mRNA_H-paniculata_contig15051.3000.1|Name=mRNA_H-paniculata_contig15051.3000.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=213bp|location=Sequence derived from alignment at H-paniculata_contig15051:889..1101- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGCCGCAGGTCGGGTGGGTGCTGCGGCTCATTTCTGCAAGAGAACTTTC
CGACAAGATGTGCCGTAAGACGCCCTTCAGCCTCAACGTTATCTCTCACG
ACGCAGCGGCCGAAATGATCCGCGCCGTCCAGACACGCGGTGTCATGGTT
ACCAAGGTATTCGTGGACACGGTGGGAGATCCGGGGTTTTACCAGTCCAA
GCTCGAGAAGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig15051:889..1101-

>mRNA_H-paniculata_contig15051.3000.1 ID=mRNA_H-paniculata_contig15051.3000.1|Name=mRNA_H-paniculata_contig15051.3000.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig15051:889..1101- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGCCGCAGGTCGGGTGGGTGCTGCGGCTCATTTCTGCAAGAGAACTTTC
CGACAAGATGTGCCGTAAGACGCCCTTCAGCCTCAACGTTATCTCTCACG
ACGCAGCGGCCGAAATGATCCGCGCCGTCCAGACACGCGGTGTCATGGTT
ACCAAGGTATTCGTGGACACGGTGGGAGATCCGGGGTTTTACCAGTCCAA
GCTCGAGAAGTGAACGCCGCAGGTCGGGTGGGTGCTGCGGCTCATTTCTG
CAAGAGAACTTTCCGACAAGATGTGCCGTAAGACGCCCTTCAGCCTCAAC
GTTATCTCTCACGACGCAGCGGCCGAAATGATCCGCGCCGTCCAGACACG
CGGTGTCATGGTTACCAAGGTATTCGTGGACACGGTGGGAGATCCGGGGT
TTTACCAGTCCAAGCTCGAGAAGTGA
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