mRNA_H-paniculata_contig1505.2999.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1505.2999.1
Unique NamemRNA_H-paniculata_contig1505.2999.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1505.2999.1 vs. uniprot
Match: A0A6H5JXN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN7_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 2.000e-5
Identity = 17/52 (32.69%), Postives = 32/52 (61.54%), Query Frame = -2 
Query:  234 YFNAVWKQAHPTVRLKSGSGFIKCDECVRFNQMLHGSRGVQAVRGSTARGEV 389
            YFN +W++  P ++L     F+KC +C   N+ LHG+ G++ ++ +  R E+
Sbjct:   32 YFNQIWREERPLIKLARFGDFMKCSDCTEINEKLHGAPGIRPIQDTRQRAEI 83
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1505.2999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JXN7_9PHAE2.000e-532.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1505contigH-paniculata_contig1505:9101..9659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size453
Cds size288
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1505.2999.1prot_H-paniculata_contig1505.2999.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1505 9101..9494 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929206.9915237-CDS-H-paniculata_contig1505:9100..93301622929206.9915237-CDS-H-paniculata_contig1505:9100..9330Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1505 9101..9330 -
1691480770.281853-CDS-H-paniculata_contig1505:9100..93301691480770.281853-CDS-H-paniculata_contig1505:9100..9330Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1505 9101..9330 -
1622929207.0386817-CDS-H-paniculata_contig1505:9436..94941622929207.0386817-CDS-H-paniculata_contig1505:9436..9494Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1505 9437..9494 -
1691480770.2915666-CDS-H-paniculata_contig1505:9436..94941691480770.2915666-CDS-H-paniculata_contig1505:9436..9494Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1505 9437..9494 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929207.0825243-UTR-H-paniculata_contig1505:9494..96591622929207.0825243-UTR-H-paniculata_contig1505:9494..9659Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1505 9495..9659 -
1691480770.3062093-UTR-H-paniculata_contig1505:9494..96591691480770.3062093-UTR-H-paniculata_contig1505:9494..9659Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1505 9495..9659 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1505.2999.1

>prot_H-paniculata_contig1505.2999.1 ID=prot_H-paniculata_contig1505.2999.1|Name=mRNA_H-paniculata_contig1505.2999.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
MIWSARPVYHPRQLLSTHHTWASTSPLAVEPRTACTPRLPCSIWLNLTHS
SHLMKPLPLLSRTVGCACFHTALKYAHVARKVHAFSRWMFVISSL*
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mRNA from alignment at H-paniculata_contig1505:9101..9659-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1505.2999.1 ID=mRNA_H-paniculata_contig1505.2999.1|Name=mRNA_H-paniculata_contig1505.2999.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=559bp|location=Sequence derived from alignment at H-paniculata_contig1505:9101..9659- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATGGAAATCAGTATTGGTGTGTTATTTGGAGAAATAACTATGACAAGAA
CATTGACGCCACGCCCGAGAACAGGCAAAAAACCCACAGTTTTGCAACAA
GCATGCACCGTCAAGTTTGACACAGTCACGTGCACCTGACTGCCTCTACG
TTTGTGAGCCTGTGAATGATTTGGTCCGCTCGACCCGTCTATCACCCCAG
GCAGCTTCTTAGCACACATCACAGTTCTTCTCTTACTTCGTTCACACACG
TACTACACAAACTTCGTTCGCAAACGCACTGCCCTTAATGCGTTCACACA
TGGCTTGCCTAGCTGCCGGTGTTTCCCAGCTTGGGCTTCGACTTCTCCCC
TTGCGGTTGAGCCGCGTACTGCCTGCACTCCACGGCTGCCATGTAGCATC
TGGTTGAATCTCACGCATTCATCACACTTAATGAAGCCACTGCCGCTCTT
GAGCCGCACCGTAGGGTGCGCCTGCTTCCATACTGCGTTGAAGTACGCCC
ACGTTGCTCGGAAGGTCCATGCATTTTCCCGGTGGATGTTCGTCATTTCG
TCGTTGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1505:9101..9659-

>mRNA_H-paniculata_contig1505.2999.1 ID=mRNA_H-paniculata_contig1505.2999.1|Name=mRNA_H-paniculata_contig1505.2999.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig1505:9101..9659- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTTGGTCCGCTCGACCCGTCTATCACCCCAGGCAGCTTCTTAGCAC
ACATCACAATGATTTGGTCCGCTCGACCCGTCTATCACCCCAGGCAGCTT
CTTAGCACACATCACACTTGGGCTTCGACTTCTCCCCTTGCGGTTGAGCC
GCGTACTGCCTGCACTCCACGGCTGCCATGTAGCATCTGGTTGAATCTCA
CGCATTCATCACACTTAATGAAGCCACTGCCGCTCTTGAGCCGCACCGTA
GGGTGCGCCTGCTTCCATACTGCGTTGAAGTACGCCCACGTTGCTCGGAA
GGTCCATGCATTTTCCCGGTGGATGTTCGTCATTTCGTCGTTGTAGCTTG
GGCTTCGACTTCTCCCCTTGCGGTTGAGCCGCGTACTGCCTGCACTCCAC
GGCTGCCATGTAGCATCTGGTTGAATCTCACGCATTCATCACACTTAATG
AAGCCACTGCCGCTCTTGAGCCGCACCGTAGGGTGCGCCTGCTTCCATAC
TGCGTTGAAGTACGCCCACGTTGCTCGGAAGGTCCATGCATTTTCCCGGT
GGATGTTCGTCATTTCGTCGTTGTAG
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