mRNA_H-paniculata_contig15040.2996.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15040.2996.1
Unique NamemRNA_H-paniculata_contig15040.2996.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15040.2996.1 vs. uniprot
Match: D7G1M3_ECTSI (SpoU_methylase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M3_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 1.120e-13
Identity = 63/210 (30.00%), Postives = 85/210 (40.48%), Query Frame = 1 
Query:  517 SQARFSVTVPRTRGAQNQTHSITKAVTNGLAPLLSGVNAG--VGLLQVLNTTASLSVAPVSSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERPRGNNTDIINSRSRQTTQTTSSAVALELRDGKVIWRAGHELWLAVAGAEDLPSQGYSRDERVNEAARRGGSSSPAEHSSTSTNRPRGCNGDPPNGSARFNAPRGSARYDFVIIW 1140
            SQARFSVT+P  RG  ++  ++TK VTNGL PLL G  AG  VGLL VLNTTASL+V+ +   +                                               +    ++ VAL +RD   +W  G ELW+++A  ED    G + D+                                    A    PRGSARYDF+++W
Sbjct:   25 SQARFSVTLPPPRGPDDRCRAVTKVVTNGLVPLLEGFTAGEGVGLLHVLNTTASLAVSSIPPPTTTVQEAAGTVGATAV--------------------------------SPAPPATTVALTIRDSSAVWGQGQELWMSLAQEEDTSCGGSADDD------------------------------------ALAKVPRGSARYDFLVLW 166
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15040.2996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1M3_ECTSI1.120e-1330.00SpoU_methylase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15040contigH-paniculata_contig15040:3083..5258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue7.3e-14
Seed eggNOG ortholog2880.D7G1M3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.SpoU rRNA Methylase family
EggNOG OGs2S6AC@2759,COG0566@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1436
Cds size1434
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929206.5658727-CDS-H-paniculata_contig15040:3084..43831622929206.5658727-CDS-H-paniculata_contig15040:3084..4383Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15040 3085..4383 -
1691480770.1202128-CDS-H-paniculata_contig15040:3084..43831691480770.1202128-CDS-H-paniculata_contig15040:3084..4383Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15040 3085..4383 -
1622929206.5827265-CDS-H-paniculata_contig15040:5123..52581622929206.5827265-CDS-H-paniculata_contig15040:5123..5258Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15040 5124..5258 -
1691480770.1307418-CDS-H-paniculata_contig15040:5123..52581691480770.1307418-CDS-H-paniculata_contig15040:5123..5258Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15040 5124..5258 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15040.2996.1prot_H-paniculata_contig15040.2996.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15040 3085..5258 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15040.2996.1

>prot_H-paniculata_contig15040.2996.1 ID=prot_H-paniculata_contig15040.2996.1|Name=mRNA_H-paniculata_contig15040.2996.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=478bp
LFLWWDSLQAGKGGNRMKGTKGGGLIMGEMVAGLMLAAVMLLIPQTIAWR
KNPPDILRSQRTNHERQRKYYCTLQRQQQQRHQRSAMMATIDTSSSSSSP
ANLPPNTFPPTTAATITATSMVTLTESRVETRSIDTARRTAATPRVSSNI
TTTSTIATTRKTATLASLSSAWSQARFSVTVPRTRGAQNQTHSITKAVTN
GLAPLLSGVNAGVGLLQVLNTTASLSVAPVSSASTTLLAAAAATAGENSL
PHDDNNSGNRNDSSERPRGNNTDIINSRSRQTTQTTSSAVALELRDGKVI
WRAGHELWLAVAGAEDLPSQGYSRDERVNEAARRGGSSSPAEHSSTSTNR
PRGCNGDPPNGSARFNAPRGSARYDFVIIWPTATTAAAATANVSGQENLD
ATALVATTPSGNKYGNGIQNEESSGTGEGDARRYSDNGSHSISSTHDTDE
AAEVGSAATAAGEGDTGPDLGLVEGNSR
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mRNA from alignment at H-paniculata_contig15040:3083..5258-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15040.2996.1 ID=mRNA_H-paniculata_contig15040.2996.1|Name=mRNA_H-paniculata_contig15040.2996.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2176bp|location=Sequence derived from alignment at H-paniculata_contig15040:3083..5258- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTTTTTATGGTGGGATAGTTTACAGGCAGGGAAGGGTGGAAATAGGAT
GAAAGGAACCAAGGGGGGTGGCCTGATAATGGGCGAAATGGTAGCTGGCC
TCATGTTAGCGGCTGTGATGCTCTTGATACCGCAGGTACGCTTGCGTCCA
GACACGACAAAGTTGTTCATCAAGTGTGAATTTTGAAATGTCAAACGATC
GACATATGGGAAACGCGTACGTTGTCATGTATCCCTCTGCTGGTCGGTCA
TCTCTGGCGATACTCACTCCTCTGTGGCGCAGTCGTTTTATCTTCAAGAT
GCAGCGACTTGTGCTTCTCCATAGGCTAACATCGATACCTTAGCTCTACA
TACGGATATCTTTTCTTATTAGCCTACAGCACCAGTACCGACAGTACAGT
GTCCGACCTACCACACTGGAGCGTTACGTCGGAGCTGTCAAATTCAACAG
CAGGTCGTTAGGGAAGATGCGGTGAGTACTTGCCACGCAGATACAGGTAT
ACATGCAGGGTTCAATCAGTCCCAGCTGCCCACGTCTCTTCGCTGTAGAC
TGTCTGTAATCTATTGGACTACGTTGGCGAACTATCCTGTTCGCGCGGTG
CTGCACTCTTTGTACTGTATTGCTGCTGCCCTATTGATGCTGTGTGAAAC
CATTACCTACTCTACACACCACTCCTTTCAGTTTGTGGGCGACACAGGCA
GGTACACAACCCTGACTCTTTCTCTTCGGTCTGTGTCCAGAGGCTTGTTC
GTGTGGCAAACCATACACACCATACCAATCACGTTGAAAGTCACAGACAC
TAACATTTTACCTGTACGATGACTCTCTACACCTAAAACTGTCCTGTGGC
GTGTGCGCTCTGTCTCTCCAAACAGACCATAGCGTGGCGAAAGAACCCGC
CCGACATTCTCCGATCGCAGCGGACAAACCACGAGCGACAACGAAAGTAC
TACTGTACCCTCCAACGCCAACAACAGCAAAGACATCAACGCTCAGCGAT
GATGGCAACAATTGATACTAGCAGTAGCAGCTCATCCCCCGCCAACCTTC
CTCCCAACACCTTCCCTCCAACAACCGCAGCAACAATCACGGCGACGTCG
ATGGTCACGTTGACTGAGTCTCGAGTGGAAACTAGAAGCATTGACACCGC
CAGAAGAACAGCGGCGACCCCTCGCGTCAGCAGCAACATCACCACCACCT
CTACCATCGCCACCACCAGAAAAACGGCAACACTGGCATCTTTATCCTCG
GCTTGGTCGCAGGCACGTTTCTCAGTCACCGTTCCTCGGACGCGAGGTGC
ACAAAACCAAACCCATTCCATCACAAAGGCCGTCACCAACGGACTAGCCC
CATTGCTCTCTGGCGTCAACGCGGGCGTTGGTCTCCTGCAAGTGCTGAAC
ACGACGGCGTCCCTCTCCGTGGCGCCTGTCAGCTCTGCTAGCACTACTCT
GCTGGCGGCAGCGGCAGCTACGGCGGGGGAGAACTCTCTGCCCCACGACG
ACAATAATAGCGGAAACCGTAACGACAGCAGCGAGCGACCACGCGGGAAC
AACACCGATATTATTAATAGCAGGAGCAGACAAACAACACAAACAACGTC
CTCTGCGGTAGCCCTGGAGCTTCGCGACGGGAAAGTAATCTGGCGCGCGG
GGCACGAGCTGTGGTTAGCCGTGGCAGGAGCCGAAGACCTCCCCTCACAA
GGATATTCAAGGGATGAGAGAGTAAATGAAGCAGCAAGGAGAGGAGGATC
GAGTTCCCCCGCCGAGCATAGCAGTACCTCTACGAACAGACCCCGAGGTT
GCAACGGTGATCCGCCAAATGGGTCCGCACGGTTCAATGCGCCGAGAGGG
TCCGCGCGGTATGACTTCGTTATCATTTGGCCGACCGCGACCACCGCCGC
CGCCGCCACCGCCAACGTTAGCGGACAGGAAAACTTGGACGCAACTGCAC
TTGTTGCAACGACTCCCAGCGGCAACAAGTACGGCAATGGCATCCAGAAT
GAGGAAAGTAGCGGTACTGGTGAGGGTGACGCCAGACGTTATAGCGATAA
CGGCAGTCACAGCATTAGTAGTACTCATGACACGGACGAAGCGGCAGAGG
TAGGCTCGGCGGCGACGGCGGCGGGCGAGGGTGATACAGGACCGGACCTG
GGGCTAGTAGAGGGCAACTCACGAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig15040:3083..5258-

>mRNA_H-paniculata_contig15040.2996.1 ID=mRNA_H-paniculata_contig15040.2996.1|Name=mRNA_H-paniculata_contig15040.2996.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2868bp|location=Sequence derived from alignment at H-paniculata_contig15040:3083..5258- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTTTTTATGGTGGGATAGTTTACAGGCAGGGAAGGGTGGAAATAGGAT
GAAAGGAACCAAGGGGGGTGGCCTGATAATGGGCGAAATGGTAGCTGGCC
TCATGTTAGCGGCTGTGATGCTCTTGATACCGCAGCTGTTTTTATGGTGG
GATAGTTTACAGGCAGGGAAGGGTGGAAATAGGATGAAAGGAACCAAGGG
GGGTGGCCTGATAATGGGCGAAATGGTAGCTGGCCTCATGTTAGCGGCTG
TGATGCTCTTGATACCGCAGACCATAGCGTGGCGAAAGAACCCGCCCGAC
ATTCTCCGATCGCAGCGGACAAACCACGAGCGACAACGAAAGTACTACTG
TACCCTCCAACGCCAACAACAGCAAAGACATCAACGCTCAGCGATGATGG
CAACAATTGATACTAGCAGTAGCAGCTCATCCCCCGCCAACCTTCCTCCC
AACACCTTCCCTCCAACAACCGCAGCAACAATCACGGCGACGTCGATGGT
CACGTTGACTGAGTCTCGAGTGGAAACTAGAAGCATTGACACCGCCAGAA
GAACAGCGGCGACCCCTCGCGTCAGCAGCAACATCACCACCACCTCTACC
ATCGCCACCACCAGAAAAACGGCAACACTGGCATCTTTATCCTCGGCTTG
GTCGCAGGCACGTTTCTCAGTCACCGTTCCTCGGACGCGAGGTGCACAAA
ACCAAACCCATTCCATCACAAAGGCCGTCACCAACGGACTAGCCCCATTG
CTCTCTGGCGTCAACGCGGGCGTTGGTCTCCTGCAAGTGCTGAACACGAC
GGCGTCCCTCTCCGTGGCGCCTGTCAGCTCTGCTAGCACTACTCTGCTGG
CGGCAGCGGCAGCTACGGCGGGGGAGAACTCTCTGCCCCACGACGACAAT
AATAGCGGAAACCGTAACGACAGCAGCGAGCGACCACGCGGGAACAACAC
CGATATTATTAATAGCAGGAGCAGACAAACAACACAAACAACGTCCTCTG
CGGTAGCCCTGGAGCTTCGCGACGGGAAAGTAATCTGGCGCGCGGGGCAC
GAGCTGTGGTTAGCCGTGGCAGGAGCCGAAGACCTCCCCTCACAAGGATA
TTCAAGGGATGAGAGAGTAAATGAAGCAGCAAGGAGAGGAGGATCGAGTT
CCCCCGCCGAGCATAGCAGTACCTCTACGAACAGACCCCGAGGTTGCAAC
GGTGATCCGCCAAATGGGTCCGCACGGTTCAATGCGCCGAGAGGGTCCGC
GCGGTATGACTTCGTTATCATTTGGCCGACCGCGACCACCGCCGCCGCCG
CCACCGCCAACGTTAGCGGACAGGAAAACTTGGACGCAACTGCACTTGTT
GCAACGACTCCCAGCGGCAACAAGTACGGCAATGGCATCCAGAATGAGGA
AAGTAGCGGTACTGGTGAGGGTGACGCCAGACGTTATAGCGATAACGGCA
GTCACAGCATTAGTAGTACTCATGACACGGACGAAGCGGCAGAGGTAGGC
TCGGCGGCGACGGCGGCGGGCGAGGGTGATACAGGACCGGACCTGGGGCT
AGTAGAGGGCAACTCACGAACCATAGCGTGGCGAAAGAACCCGCCCGACA
TTCTCCGATCGCAGCGGACAAACCACGAGCGACAACGAAAGTACTACTGT
ACCCTCCAACGCCAACAACAGCAAAGACATCAACGCTCAGCGATGATGGC
AACAATTGATACTAGCAGTAGCAGCTCATCCCCCGCCAACCTTCCTCCCA
ACACCTTCCCTCCAACAACCGCAGCAACAATCACGGCGACGTCGATGGTC
ACGTTGACTGAGTCTCGAGTGGAAACTAGAAGCATTGACACCGCCAGAAG
AACAGCGGCGACCCCTCGCGTCAGCAGCAACATCACCACCACCTCTACCA
TCGCCACCACCAGAAAAACGGCAACACTGGCATCTTTATCCTCGGCTTGG
TCGCAGGCACGTTTCTCAGTCACCGTTCCTCGGACGCGAGGTGCACAAAA
CCAAACCCATTCCATCACAAAGGCCGTCACCAACGGACTAGCCCCATTGC
TCTCTGGCGTCAACGCGGGCGTTGGTCTCCTGCAAGTGCTGAACACGACG
GCGTCCCTCTCCGTGGCGCCTGTCAGCTCTGCTAGCACTACTCTGCTGGC
GGCAGCGGCAGCTACGGCGGGGGAGAACTCTCTGCCCCACGACGACAATA
ATAGCGGAAACCGTAACGACAGCAGCGAGCGACCACGCGGGAACAACACC
GATATTATTAATAGCAGGAGCAGACAAACAACACAAACAACGTCCTCTGC
GGTAGCCCTGGAGCTTCGCGACGGGAAAGTAATCTGGCGCGCGGGGCACG
AGCTGTGGTTAGCCGTGGCAGGAGCCGAAGACCTCCCCTCACAAGGATAT
TCAAGGGATGAGAGAGTAAATGAAGCAGCAAGGAGAGGAGGATCGAGTTC
CCCCGCCGAGCATAGCAGTACCTCTACGAACAGACCCCGAGGTTGCAACG
GTGATCCGCCAAATGGGTCCGCACGGTTCAATGCGCCGAGAGGGTCCGCG
CGGTATGACTTCGTTATCATTTGGCCGACCGCGACCACCGCCGCCGCCGC
CACCGCCAACGTTAGCGGACAGGAAAACTTGGACGCAACTGCACTTGTTG
CAACGACTCCCAGCGGCAACAAGTACGGCAATGGCATCCAGAATGAGGAA
AGTAGCGGTACTGGTGAGGGTGACGCCAGACGTTATAGCGATAACGGCAG
TCACAGCATTAGTAGTACTCATGACACGGACGAAGCGGCAGAGGTAGGCT
CGGCGGCGACGGCGGCGGGCGAGGGTGATACAGGACCGGACCTGGGGCTA
GTAGAGGGCAACTCACGA
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