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Homology
BLAST of mRNA_H-paniculata_contig1504.2995.1 vs. uniprot
Match: D7G7Y9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Y9_ECTSI) HSP 1 Score: 74.7 bits (182), Expect = 8.510e-11 Identity = 50/105 (47.62%), Postives = 58/105 (55.24%), Query Frame = 1
Query: 1003 LSAWLEPRNEGKDAKKKNKRKAKGKI--------GFDGKDGGDANADHEYEDAESSCGNVVGEDWISERLGGLDPGGVARAKNSWADRERRHLTATDVALGAKRK 1293
LSAWLEPR + KR A G GF G +GG G G W+S+RL GLDP G ARAK+SW+DRERR+LT TD+ALGAKRK
Sbjct: 213 LSAWLEPRQPAT----RGKRTAHGTSVAEREPDGGFSGDEGG---------------GEDGGGRWMSDRLEGLDPTGAARAKDSWSDRERRNLTCTDIALGAKRK 298
BLAST of mRNA_H-paniculata_contig1504.2995.1 vs. uniprot
Match: A0A6H5KWK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWK6_9PHAE) HSP 1 Score: 73.6 bits (179), Expect = 2.100e-10 Identity = 44/97 (45.36%), Postives = 54/97 (55.67%), Query Frame = 1
Query: 1003 LSAWLEPRNEGKDAKKKNKRKAKGKIGFDGKDGGDANADHEYEDAESSCGNVVGEDWISERLGGLDPGGVARAKNSWADRERRHLTATDVALGAKRK 1293
LS WLEP K+ + + + G DG GD G W+S+RL GLDP G ARAK+SW+DRERR+LT TD+ALGAKRK
Sbjct: 210 LSGWLEPHQPATSGKQTVRGTSVAERGSDGGFSGDKGG-----------GEYGSSKWMSDRLEGLDPSGAARAKDSWSDRERRNLTCTDIALGAKRK 295
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | hypothetical protein |
Ec32 ortholog | Ec-06_009500.1 |
Exons | 3 |
Model size | 1937 |
Cds size | 1365 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1504.2995.1 >prot_H-paniculata_contig1504.2995.1 ID=prot_H-paniculata_contig1504.2995.1|Name=mRNA_H-paniculata_contig1504.2995.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=455bp
MDKAMMSFVKNTKNNRSAPVKQRRIKQRLDSGEEATQKPHPLFNPRIQIQ NINQALGTASSVSSMSRVRARVGVAVVRDKASREKPTAPIPSKGRKITSP RGSCSPVSIDHEDESGIEDDLWWMNTPLKTKTKSRARHQPSPSNLSLSPS NLPPSPPPQNAAIDDSSKSTEHGVDGAHVFAAFDGGYTFSDLDEDGDAYG DDVVYTGSAGAGEALSISSWLSPPQSVAARETKRTRSAEEAARPHRAKRA RPTKGVNSDNIGSSRSSAVTVDGLSNSATSRMWAKMGYSRHAGIGVASGA APVAKTTSSAGSSLSAWLEPRNEGKDAKKKNKRKAKGKIGFDGKDGGDAN ADHEYEDAESSCGNVVGEDWISERLGGLDPGGVARAKNSWADRERRHLTA TDVALGAKRKSSGKGNGRGWRTRADGAKVFVAATRGGTAAVAKGQAAFRM SLGR* back to topmRNA from alignment at H-paniculata_contig1504:13418..19274+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig1504.2995.1 ID=mRNA_H-paniculata_contig1504.2995.1|Name=mRNA_H-paniculata_contig1504.2995.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5857bp|location=Sequence derived from alignment at H-paniculata_contig1504:13418..19274+ (Halopteris paniculata Hal_grac_a_UBK monoicous) CGTCAGAAAGGCGAGATAGACAGGGAGTAAGAGACAACCTTTAGGCTCGT
AGAGACTTGCATCATGGACAAAGCAATGATGAGTTTTGTGAAAAACACAA
AAAACAATAGAAGTGCCCCTGTAAAGCAAAGGAGGATCAAGCAGCGATTG
GACTCCGGCGAAGAAGCCACACAAAAGCCACATCCTCTGTTCAATCCTCG
AATTCAAATTCAAAACATTAATCAAGCTCTTGGTACAGCTAGCTCTGTGT
CCAGCATGTCGCGTGTCCGAGCGCGAGTGGGTGTTGCTGTGGTACGGGAT
AAAGCTTCGAGAGAGAAACCTACTGCACCAATTCCATCCAAGGGCCGCAA
GATCACTTCACCCCGTGGTAGCTGCTCTCCAGGTGATTCCATACTGAGCT
TCGTTTAATGGTTGGGTTCTGATGTGTGTATTGGTATAGTATACATAGGC
ACGTCCTGAAAAGTAGGTATTTTCCCTGTTAACCCTTGTTTATCATTGCC
GGTCTACTGGTAATGTCGCTTGTCACTGGCACAGTACAGAGAGTTGCTGT
GTGCAGCACGTAAACAGACTGTAGGCATGTGTAAGAGAAGTATGCCCTTC
TACCATGTTAGCATAGTAAGAGTTTGTGTCAGAGGAGTCTCTTCAGTGTT
CAATTTCATTGATCATGCGCATCCCAAGGTTGTGTGACACGAGCTAACTA
CGTATTAATAATATAGTTTTTCGGGGCTTTGTGCGGTTAACTTTTTTATG
TTGAAAGCTTCTGATGCAGTTGATGTTTAGAGCGAAGCACACACTCAACG
TCGTGCATCTCATTTACCTTTATTTTACCGAAATCTATTGGTTGGTCGAT
GGTAGAGAACAGGTCTGCGAAAAGAGTTACACTTTAAGATACGAATCACT
TGAGTTCAGCGCAGGATTTAGCAAGCGACGAGAAATGGCTCTATCGATGT
GTCGATGTGTATATACTCACTTCGTGTAGGTTGCACCCTCCTTGTTTCGG
TACGCTTGCAACCACACCGAACGTTACACCTCCCGGACACATACGATACT
TCCATTTTTTTTTCACAAAAAATTGAAAGTATTCGGCTGAGTTTCAGAAT
GAGCTCGTGTGTTCTATGTGCCCCGGATATCTACGACTGGTAATAATATT
CGTAAATCCAATGGACGAAGGTGGGTACTGTATTCCATGTGTCCGCTCAT
TCTAAAACTCAGCCAAATACTGTGAATTTTCTGTGAAAACCTTTTGCAAG
TGGTCGCATTTGTTTGGGGGGTGGAACGTTATCATGGCACGGTTCGTCTG
CGTAGAAAGACAATCGTTTCGTACTTGAACCCTCTAGTGCACACACGCGC
GCCCCTGCAGCACATCGAAATGTGGTTTATCCCAACGGCAGCATCGCGGC
TGCGGTGTCCATGAGCACCGCATTTCCTTTTTCATGATATTCGCTACCCC
CCCCCCCGCGTTTTTGCAGTGTCTATTGACCACGAAGACGAATCAGGAAT
CGAAGACGACCTCTGGTGGATGAACACGCCTCTGAAAACGAAAACCAAGT
CCAGAGCACGGCACCAGCCTTCTCCGTCAAATCTTTCTCTTTCTCCGTCG
AACCTTCCTCCTTCTCCGCCTCCTCAAAACGCCGCAATAGATGACTCTTC
TAAATCCACTGAACATGGCGTAGATGGCGCCCACGTATTCGCTGCCTTCG
ACGGTGGGTACACATTTTCGGATCTAGACGAAGATGGAGATGCCTATGGT
GATGACGTTGTTTACACAGGGAGCGCAGGGGCGGGCGAGGCGCTGTCTAT
TTCGTCGTGGCTGTCGCCGCCTCAGAGCGTAGCCGCGCGGGAAACCAAAA
GGACCCGGTCTGCAGAAGAGGCAGCAAGACCCCACAGAGCGAAACGAGCA
CGGCCCACAAAGGGAGTGAATTCTGACAATATCGGCAGCTCTAGATCGTC
GGCAGTCACAGTCGACGGACTCTCGAATAGCGCGACAAGTAGAATGTGGG
CAAAGATGGGATATTCGCGTCATGCGGGGATCGGTGTTGCATCCGGCGCA
GCCCCAGTGGCCAAGACTACCAGCAGTGCCGGCAGCAGCTTGTCAGCGTG
GCTGGAACCGCGGAATGAGGGTAAAGACGCCAAGAAGAAAAACAAGCGAA
AGGCTAAAGGAAAAATTGGTTTCGACGGGAAGGACGGAGGAGACGCGAAT
GCTGACCACGAGTACGAGGATGCTGAGAGTTCCTGCGGTAATGTCGTTGG
CGAAGATTGGATATCAGAGCGACTGGGAGGGCTGGATCCAGGCGGGGTGG
CCAGGTACGACACGATTCTCCTTTCTCTCGGCTTGCTTGTCTTATGACCA
TTTTCACTGAAGCTAAAAATTTCGTATAACATTGCTCAGCTGGAGCAATC
GTTTGTATTCTCAAGTTCAGAAGAAAAACTGCCCGTCCATGGATATTATG
GTCAAAGAGTTGAGATCTTGCACAGTTAGTGTTGCTGGTGCTGTTGACGT
TGTTGGGACACATGTTGGCTTCCTATGCATACGCTATTAATATGGAACGG
AAAAAAAGAAGCACGAAAATAGGCACTGTTGGCTAGTGGGGGACGCGAAG
TACGTTTTTCTGCGTAAGATTCCCGTAGCTAAAGTGGCATAGTGGCGGGC
GTGATGAGGGCATGATGAATCCCGATACGCCGGTGTAGATGTCATGCCCG
GGAAAAGTAGAAGGCATGTGGCGTTATCGTTAATTTTCGTGCACTATGTT
TTGGGTCGATACGATGTATTTGTATCAGAATGATTCAACCTGATGAGACT
GGACAAAAATGGGCTCGATGTGTAGCATTCGCACAAGTTTGTCGGGGCTT
CGGAAGCCGTTCCAGAAGTCTTACGCTTGTATCCGTCCGTCACCTGTATT
GCATATCTCTTCCGCGAGTTGAAGTGATGCCCTAGAGTATCGTCTCAACC
GATATCTCGATGGCGGTGATGAACAGTTCGTCGACATCCAGTCATTCTTG
TATCATATGGGTGTTACAAAGCATCCAGCCGTCTGCGACTCGGCCAGTTT
TGTATTATACAGGTTAGAATAGAATAGAGTGAGTCAATGAACATAGCCGC
AACCTTCGAAATACGATATTTGGGGGGTGCCGGATGCCTCTTTGGCATGC
CGTCGCGCCAGCGTTGAAAGCTGTTCAGCACCTTAACCGCCGCCATCGGA
TCATGACCAATGACTATATGTTCGATTTCCCATATTAATAATAGTACTCA
CGGCAGTTGACTCGTACTCTACTGTTGTGTCATGCAGGCCAAGTTGCAGA
GGCCGGCCGTATTTTTTGGGGCATACGACAATATTTCAACTTTGAGATCT
GTACCCCGTCTTCAACTTTTGCGACTGGACGCATTAGGTTCGGAAGCTCC
GTCACAGACCTTAACCGCCGTCGTTTGACCATTGATCGTCATATCATAGT
TGACCCATAGTCCTCCCTCGAGTTGGATTTGTGACCTTTGGCACCCAATA
GGCCAAGATCTAGTTCACAACGATGTATGGTAGAGATATGTGGCTGGATC
GTTTCTCCGTTAATACAATTCACTATTATTAGCTTTACTTGTAGTCATGG
GAATGTCTTGAGGTGATGGAATAAACCACGAACTTCCAAAAGCGGTGCGC
ATGCGCTCGTATCCTTAACCGTCTTACATCTGGAGGAATAAAAAAACTGA
CATGAAGAAGCAATTTCTTTCACAGAAACTTCAACGCCTGATTACCAATT
ACGATAGATATAAGTCATGTTTTCATATCCCGACAGGTACGACTGTGGCA
GACCACCTGCTGCTGTGTCTATGGGACAACAGGACGTCACACACGTAGTG
ACTATCGTTCGCTACGAAACTCTCGGGATGTGCTGGTGCCTACCAGCTGT
CTCCCTCTCTATTTATTGTGTGCCACAGATGTTGTGCTGGATGCAATAGT
ACACCTGTTGAACGGCATGCAGTACTTTCTGCTTCCTTTTGTCGACTGGC
GCAGCAGCACTACGGCATCATACTGTTTGCGCTGTTCACGTGGCTGCCAC
TGCTTGATGGAGCCAATTTTGTACTCGGCTGTACCACTTCTACATGAAGC
ACACGGCGCTCCAGCTGCTGTGCCAGCCCTTGACATATGTGAATTTTGTA
CAAAACAATCCCCTTTTATACCTAGTGTCAACATCTGATAGTCTGAATTT
ATGCAGATAACCAAATTATGTCGTATTCCCCCTGTATTATGTGTCTTACT
TTGGTGGACATAAGAGTCTGATCTCAATGTGGCCAAAAAAGTTATGTCCG
TAGACATTCGGTACCCTCCCCCTCTCCCCCCCCCCCCTCCGACGCGACAC
TGTCGAAAATCGCGAGTCAAAAATTGTCACAATGCAGCCAGCCTGGTCTT
GGAGTTTAACGTGCTTGTAAGCCTTGTAGTGAAATGAAGGGTTGTATTGA
TCGTGTTGCTGGTGCTGGTGCTGGTGCTGGTGCTGCTGGTAATGTCCTGT
AAGGTCCCCCCTGACGCGCTTTGCCACTGCCGTGCAGTACTCTCGGATCG
ACAGTAGTGCATACAGCAATCCCAATCGCGTTGCCTTGTTTTGCCTTCCC
GTATACGGTGTTAACGGCACACTTGACAATTTCTCGCTTTAGACGGCAGG
CTGTCGCGTTCTTGCGCGAGCTCTTTAGCTCCCGCGAAAGATTGATTGAC
ACCAGGCTATCAGAGTTAGCCCCCCGGGCAACTTACACGTGCATTTCTCT
TCCCTGCATAGCCCTTCTTGCCAGTATACGTGTGATCTCGACCCTGCGAT
CTATTATTCCCGAGTTACAGTGCTCTGAGCACCGCAAGTTATGCTGCCAT
TGCCTCACAACACTAACCAATAAACATGAACCAATATGTACACCCATCCA
CCGACCAACCGACTTCACTTCGACAAATTTGGTAGAATTTTTGGACTACT
AAAACTATGTGATGATCTATTTTCTCGTCTACATGGGTTCTCATTCATGT
AAGATGCACCAACAACACGAACTATTTCGTTAATCCTTATCATGTCCTGT
ACACCTCCCTCCCTGGTAGTCCACCTCCTCTGTCCTTTTTGCTATACTGT
ATTTCAAACACCGCCCTTCGCTCACACGACCACAAAGAGCGAAGAACAGC
TGGGCGGACAGAGAGAGGCGCCACCTCACTGCTACTGATGTTGCGCTCGG
CGCTAAACGCAAGAGCTCGGGCAAAGGAAATGGGAGGGGCTGGAGAACTA
GAGCAGACGGAGCTAAGGTTTTCGTAGCGGCCACGAGGGGTGGCACCGCT
GCGGTGGCCAAAGGCCAGGCAGCATTCAGAATGTCTCTGGGTCGATAGAT
ACCGTCGGCAGGAGAATTGTTTATACAGAAAAGTAGATAGACGGGTCGCA
GCACACCCCCCCGTGGAAATGTAGAAACAGTTTACATGGACATGCAATCA
GGGTACTGTGTACTGTAGCAGTCAGTTGGAATGGCTGCTGCCTTCGAAAT
CCATCTCTCTTTTGCCAGCAGCAGACAGCAGCTCCAATGAATTAGGCAAT
TAACCGAGATGCATTTTTTGTGCCTCTGACATTAGTTGCCGGCGGGCGGC
GGTGTGGCTGTGTGCAGTGTGTGTGTGGAAGGTTGTGACGAGCACTTTCT
GGCGTTTTTGCTTCACTCTGTCTGGGAAGGTGATTCCATCAATTGACGAG
ATATGCGTCCATGGTCAGCAGCACCAAGTTAAATCAAGGCAATTCATCTG
ATACGATGCTATATTGGTACAAGTAGTCGTCACACGGCTTTCAAAAGTAC
ATCGTCTCGGTATCTGTCCAAGGTCCGGTCCACTGCCGGACATATAGGTT
TTAATAC back to topCoding sequence (CDS) from alignment at H-paniculata_contig1504:13418..19274+ >mRNA_H-paniculata_contig1504.2995.1 ID=mRNA_H-paniculata_contig1504.2995.1|Name=mRNA_H-paniculata_contig1504.2995.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2730bp|location=Sequence derived from alignment at H-paniculata_contig1504:13418..19274+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGACAAAGCAATGATGAGTTTTGTGAAAAACACAAAAAACAATAGAAG TGCCCCTGTAAAGCAAAGGAGGATCAAGCAGCGATTGGACTCCGGCGAAG AAGCCACACAAAAGCCACATCCTCTGTTCAATCCTCGAATTCAAATTCAA AACATTAATCAAGCTCTTGGTACAGCTAGCTCTGTGTCCAGCATGTCGCG TGTCCGAGCGCGAGTGGGTGTTGCTGTGGTACGGGATAAAGCTTCGAGAG AGAAACCTACTGCACCAATTCCATCCAAGGGCCGCAAGATCACTTCACCC CGTGGTAGCTGCTCTCCAGATGGACAAAGCAATGATGAGTTTTGTGAAAA ACACAAAAAACAATAGAAGTGCCCCTGTAAAGCAAAGGAGGATCAAGCAG CGATTGGACTCCGGCGAAGAAGCCACACAAAAGCCACATCCTCTGTTCAA TCCTCGAATTCAAATTCAAAACATTAATCAAGCTCTTGGTACAGCTAGCT CTGTGTCCAGCATGTCGCGTGTCCGAGCGCGAGTGGGTGTTGCTGTGGTA CGGGATAAAGCTTCGAGAGAGAAACCTACTGCACCAATTCCATCCAAGGG CCGCAAGATCACTTCACCCCGTGGTAGCTGCTCTCCAGTGTCTATTGACC ACGAAGACGAATCAGGAATCGAAGACGACCTCTGGTGGATGAACACGCCT CTGAAAACGAAAACCAAGTCCAGAGCACGGCACCAGCCTTCTCCGTCAAA TCTTTCTCTTTCTCCGTCGAACCTTCCTCCTTCTCCGCCTCCTCAAAACG CCGCAATAGATGACTCTTCTAAATCCACTGAACATGGCGTAGATGGCGCC CACGTATTCGCTGCCTTCGACGGTGGGTACACATTTTCGGATCTAGACGA AGATGGAGATGCCTATGGTGATGACGTTGTTTACACAGGGAGCGCAGGGG CGGGCGAGGCGCTGTCTATTTCGTCGTGGCTGTCGCCGCCTCAGAGCGTA GCCGCGCGGGAAACCAAAAGGACCCGGTCTGCAGAAGAGGCAGCAAGACC CCACAGAGCGAAACGAGCACGGCCCACAAAGGGAGTGAATTCTGACAATA TCGGCAGCTCTAGATCGTCGGCAGTCACAGTCGACGGACTCTCGAATAGC GCGACAAGTAGAATGTGGGCAAAGATGGGATATTCGCGTCATGCGGGGAT CGGTGTTGCATCCGGCGCAGCCCCAGTGGCCAAGACTACCAGCAGTGCCG GCAGCAGCTTGTCAGCGTGGCTGGAACCGCGGAATGAGGGTAAAGACGCC AAGAAGAAAAACAAGCGAAAGGCTAAAGGAAAAATTGGTTTCGACGGGAA GGACGGAGGAGACGCGAATGCTGACCACGAGTACGAGGATGCTGAGAGTT CCTGCGGTAATGTCGTTGGCGAAGATTGGATATCAGAGCGACTGGGAGGG CTGGATCCAGGCGGGGTGGCCAGTGTCTATTGACCACGAAGACGAATCAG GAATCGAAGACGACCTCTGGTGGATGAACACGCCTCTGAAAACGAAAACC AAGTCCAGAGCACGGCACCAGCCTTCTCCGTCAAATCTTTCTCTTTCTCC GTCGAACCTTCCTCCTTCTCCGCCTCCTCAAAACGCCGCAATAGATGACT CTTCTAAATCCACTGAACATGGCGTAGATGGCGCCCACGTATTCGCTGCC TTCGACGGTGGGTACACATTTTCGGATCTAGACGAAGATGGAGATGCCTA TGGTGATGACGTTGTTTACACAGGGAGCGCAGGGGCGGGCGAGGCGCTGT CTATTTCGTCGTGGCTGTCGCCGCCTCAGAGCGTAGCCGCGCGGGAAACC AAAAGGACCCGGTCTGCAGAAGAGGCAGCAAGACCCCACAGAGCGAAACG AGCACGGCCCACAAAGGGAGTGAATTCTGACAATATCGGCAGCTCTAGAT CGTCGGCAGTCACAGTCGACGGACTCTCGAATAGCGCGACAAGTAGAATG TGGGCAAAGATGGGATATTCGCGTCATGCGGGGATCGGTGTTGCATCCGG CGCAGCCCCAGTGGCCAAGACTACCAGCAGTGCCGGCAGCAGCTTGTCAG CGTGGCTGGAACCGCGGAATGAGGGTAAAGACGCCAAGAAGAAAAACAAG CGAAAGGCTAAAGGAAAAATTGGTTTCGACGGGAAGGACGGAGGAGACGC GAATGCTGACCACGAGTACGAGGATGCTGAGAGTTCCTGCGGTAATGTCG TTGGCGAAGATTGGATATCAGAGCGACTGGGAGGGCTGGATCCAGGCGGG GTGGCCAGAGCGAAGAACAGCTGGGCGGACAGAGAGAGGCGCCACCTCAC TGCTACTGATGTTGCGCTCGGCGCTAAACGCAAGAGCTCGGGCAAAGGAA ATGGGAGGGGCTGGAGAACTAGAGCAGACGGAGCTAAGGTTTTCGTAGCG GCCACGAGGGGTGGCACCGCTGCGGTGGCCAAAGGCCAGGCAGCATTCAG AATGTCTCTGGGTCGATAGAGCGAAGAACAGCTGGGCGGACAGAGAGAGG CGCCACCTCACTGCTACTGATGTTGCGCTCGGCGCTAAACGCAAGAGCTC GGGCAAAGGAAATGGGAGGGGCTGGAGAACTAGAGCAGACGGAGCTAAGG TTTTCGTAGCGGCCACGAGGGGTGGCACCGCTGCGGTGGCCAAAGGCCAG GCAGCATTCAGAATGTCTCTGGGTCGATAG back to top
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