mRNA_H-paniculata_contig1502.2990.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig1502.2990.1 vs. uniprot
Match: D7G462_ECTSI (Nicolin 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G462_ECTSI) HSP 1 Score: 196 bits (497), Expect = 7.280e-59 Identity = 104/222 (46.85%), Postives = 125/222 (56.31%), Query Frame = 1 Query: 109 MPVFVGPFVLSRRTRPCPTYFELSFLGNNGSTKQQVSESARTRLGAIIFRNYYCSHITIKQRWESNGNIGAAATCGGIGGTVESDPWVTVLRDRALMTDPHFEDDAQDWHVITVEEFDQGKYDADSTAQLRIYLYQPSPMWKTIALQHVKCVSWSELVDGRGNVRDSGEFGRGIGEGASELLPMCVDSSRIPVIAPHHRESHLDELCRGIGEQVNIFGGNSR 774 +P F+GP V SR+T PCPTYFE+SFL + ++ RL AI+F+N+YCSHITIKQR + AA CG + DPW+T+LRDR LM DPH EDDAQ WHV+ EEFD +YDA+STA +RIYLYQ SPMWKT L HVK V WS G D E + +L +LCRGI EQV IFG R Sbjct: 17 IPAFIGPLVRSRQTTPCPTYFEVSFL------ESKLPRKPARRLDAIVFKNFYCSHITIKQR-RQRFDTATAADCG-----KDGDPWLTILRDRPLMEDPHHEDDAQYWHVVRSEEFDPEEYDAESTAPIRIYLYQSSPMWKTFGLHHVKAVGWSRAGSSNGGRDDEREA-----------------------------DGNLGDLCRGISEQVKIFGDKHR 197
BLAST of mRNA_H-paniculata_contig1502.2990.1 vs. uniprot
Match: A0A0H5QY21_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5QY21_9EUKA) HSP 1 Score: 88.2 bits (217), Expect = 1.970e-17 Identity = 53/147 (36.05%), Postives = 72/147 (48.98%), Query Frame = 1 Query: 163 TYFELSFLGNNGSTK---------QQVSESARTRLGAIIFRNYYCSHITIKQRWESNGNIGAAATCGGIGGTVESDPWVTVLRDRALMTDPHFEDDAQDWHVITVEEFDQGKYDADSTAQLRIYLYQPSPMWKTIALQHVKCVSWSE 576 TY ELS+ N S Q++ SA + I+FRN+YC +TI Q + + GA W T+LR LMTDPH+EDDAQ H I+ +EF++ LR YL QPSP WK+ L+ + C + E Sbjct: 7 TYQELSYTVTNDSAHSGPRPCLIYQEIQFSAPANIDHIVFRNFYCFALTITQSTANGSSDGAPY-------------WTTILRSYKLMTDPHYEDDAQYSHRISSDEFEEPFSREVPVYALRFYLEQPSPNWKSFGLRDLSCFTKRE 140
BLAST of mRNA_H-paniculata_contig1502.2990.1 vs. uniprot
Match: A0A836CPK3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPK3_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 9.570e-17 Identity = 53/161 (32.92%), Postives = 83/161 (51.55%), Query Frame = 1 Query: 109 MPVFVGPFVLSRRTRPCPTYFELSFLGNNGSTKQQVSESARTRLGAI-IFRNYYCSHITIK-QRWESNGNIGAAATCGGIGGTVESDPWVTVLRDRALMTDPHFEDDAQDWHVITVEEF--------DQGKYDADSTAQ-LRIYLYQPSPMWKTIALQHVK 558 +P+ +GP V +R RPC YFE++ L + +T GA+ +F+NYY SH+T++ QR GG ++ W TVL LM DPH+E DAQ WHV+ + + + G + D + +R+ L+Q SP+W+ + L+H K Sbjct: 15 LPILLGPLVQTRSQRPCLLYFEVTLL-----------QPKQTPPGAVFVFQNYYASHVTLRVQR----------------GGASDAFDWETVLDRHPLMRDPHYEGDAQHWHVLPLPQRVVELANGNEGGGGEGDGGVRCVRVCLHQSSPLWERVELRHFK 148
BLAST of mRNA_H-paniculata_contig1502.2990.1 vs. uniprot
Match: A0A7S0TAL6_9STRA (Hypothetical protein n=1 Tax=Chrysocystis fragilis TaxID=1411660 RepID=A0A7S0TAL6_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 1.640e-14 Identity = 55/156 (35.26%), Postives = 73/156 (46.79%), Query Frame = 1 Query: 133 VLSRRTRPCPTYFELSFLGNNGSTKQQVSESARTRLGAIIFRNYYCSHITIKQRWESNGNIGAAATCGGIGGTVESDPWVTVLRDRALMTDPHFEDDAQDWHVITVEEFD--------QGKYDADSTAQ-----LRIYLYQPSPMWKTIALQHVKC 561 VL+R RPCP Y ++ F V + RL I+FRN+Y + I + QR ++ G+ GA WV VL D LM PHFEDDAQ WH + F G A + + LR + QPS MW TI L+H++C Sbjct: 30 VLTRAERPCPIYQDVRF----------VPKKEHARLDFIVFRNHYVASIAVYQR-QAEGD-GAR--------------WVEVLGDLCLMKRPHFEDDAQAWHTLYTSRFRPAFDSHLCSGAAAASRSGEAPLGSLRFKIRQPSMMWSTIELRHLRC 159
BLAST of mRNA_H-paniculata_contig1502.2990.1 vs. uniprot
Match: A0A7S0CQL1_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CQL1_9EUKA) HSP 1 Score: 79.0 bits (193), Expect = 4.130e-14 Identity = 42/127 (33.07%), Postives = 68/127 (53.54%), Query Frame = 1 Query: 211 QVSESARTRLGAIIFRNYYCSHITIKQ-RWESNGNIGAAATCGGIGGTVESDPWVTVLRDRALMTDPHFEDDAQDWHVITVEEFDQGKYDADSTAQLRIYLYQPSPMWKTIALQHVKCVSWSELVDG 588 +V + ++G + FRN+YC+ I++K + G W ++R LM DPHFEDDAQD H+I+ ++F++ TA +R YLYQPSP W++ L ++C + S+ + G Sbjct: 28 EVKFGSPVQVGFLCFRNFYCASISVKGLAYIEEGKAN----------------WKIMIRRHPLMKDPHFEDDAQDQHIISSQQFEESFGHRPVTA-VRFYLYQPSPNWESYNLMDMRCYTTSKALKG 137
BLAST of mRNA_H-paniculata_contig1502.2990.1 vs. uniprot
Match: A0A3P3Y8X5_PLABS (Uncharacterized protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y8X5_PLABS) HSP 1 Score: 82.4 bits (202), Expect = 6.460e-14 Identity = 47/137 (34.31%), Postives = 62/137 (45.26%), Query Frame = 1 Query: 151 RPCPTYFELSFLGNNGSTKQQVSESARTRLGAIIFRNYYCSHITIKQRWESNGNIGAAATCGGIGGTVESDPWVTVLRDRALMTDPHFEDDAQDWHVITVEEFDQGKYDADSTAQLRIYLYQPSPMWKTIALQHVKC 561 RPC Y E++F + I FRNYYC+ I+IKQ G + W +L R LMTD H+EDDAQ +H I++ EF LR YL QPSP W++ L+ +KC Sbjct: 62 RPCVIYQEIAF-------------DKPANIECIKFRNYYCASISIKQL--------TIPLVDAFGTAAKESDWTAILSSRQLMTDAHYEDDAQHYHTISISEFGACFLKEIPVHALRFYLEQPSPNWRSFGLRDLKC 177
BLAST of mRNA_H-paniculata_contig1502.2990.1 vs. uniprot
Match: A0A7S3JF62_9SPIT (Hypothetical protein n=1 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3JF62_9SPIT) HSP 1 Score: 67.0 bits (162), Expect = 3.630e-10 Identity = 38/106 (35.85%), Postives = 57/106 (53.77%), Query Frame = 1 Query: 247 IIFRNYYCSHITIKQ---RWESNGNIGAAATCGGIGGTVESDPWVTVLRDRALMTDPHFEDDAQDWHVITVEEFDQGKYDADSTAQLRIYLYQPSPMWKTIALQHV 555 ++F+N+Y + ITIKQ E+ + AA W T+L + LM + HFE DAQ+WH+I E F++ K+D + LRI+L PSP W L+ + Sbjct: 39 MLFQNFYVASITIKQYKGENETKAELEKAAN------------WKTILPNYKLMNNAHFEGDAQNWHIIGTELFNE-KFDRSDLSVLRIFLNAPSPSWLDFYLKSI 131
BLAST of mRNA_H-paniculata_contig1502.2990.1 vs. uniprot
Match: A0A6A5BXG1_NAEFO (Uncharacterized protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5BXG1_NAEFO) HSP 1 Score: 60.1 bits (144), Expect = 2.180e-7 Identity = 43/139 (30.94%), Postives = 61/139 (43.88%), Query Frame = 1 Query: 133 VLSRRTRPCPTYFELSFLGNNGSTKQQVSESARTRLGAIIFRNYYCSHITIKQRWESNGNIGAAATCGGIGGTVESDPWVTVLRDRALMTDPHFEDDAQDWHVITVEEFDQGKYDADSTAQ-LRIYLYQPSPMWKTIAL 546 V + RPC Y ++ F T++ IIFRNYYCSHITIK + + NG +T+L LM + ++E+D+Q++ I + Y D LR Y YQ SP WK+ L Sbjct: 15 VKEQSKRPCLIYQDIKF-------------EKPTQIAFIIFRNYYCSHITIKYKAQ-NGTF------------------ITLLSKYQLMENANYENDSQNYVRINCGKDFNSNYKKDMQFNNLRFYYYQTSPNWKSFCL 121
BLAST of mRNA_H-paniculata_contig1502.2990.1 vs. uniprot
Match: A0A2P1N6T8_NAEFO (GS28 n=2 Tax=Naegleria fowleri TaxID=5763 RepID=A0A2P1N6T8_NAEFO) HSP 1 Score: 60.1 bits (144), Expect = 1.470e-6 Identity = 43/139 (30.94%), Postives = 61/139 (43.88%), Query Frame = 1 Query: 133 VLSRRTRPCPTYFELSFLGNNGSTKQQVSESARTRLGAIIFRNYYCSHITIKQRWESNGNIGAAATCGGIGGTVESDPWVTVLRDRALMTDPHFEDDAQDWHVITVEEFDQGKYDADSTAQ-LRIYLYQPSPMWKTIAL 546 V + RPC Y ++ F T++ IIFRNYYCSHITIK + + NG +T+L LM + ++E+D+Q++ I + Y D LR Y YQ SP WK+ L Sbjct: 15 VKEQSKRPCLIYQDIKF-------------EKPTQIAFIIFRNYYCSHITIKYKAQ-NGTF------------------ITLLSKYQLMENANYENDSQNYVRINCGKDFNSNYKKDMQFNNLRFYYYQTSPNWKSFCL 121
BLAST of mRNA_H-paniculata_contig1502.2990.1 vs. uniprot
Match: A0A1V9ZT81_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZT81_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 2.180e-6 Identity = 40/115 (34.78%), Postives = 53/115 (46.09%), Query Frame = 1 Query: 214 VSESARTRLGAIIFRNYYCSHITIKQRWESNGNIGAAATCGGIGGTVESDPWVTVLRDRALMTDPHFEDDAQDWHVITVEEFDQGKYDADSTAQLRIYLYQPSPMWKTIALQHVK 558 V A RL + F+NYY + + I Q + A GGTV T+L LM + HFEDDAQ+WHVI E+ D YL QPSP+W L+ ++ Sbjct: 35 VGLEAPARLSHLSFQNYYTASLRIDQ-------VAAG------GGTV------TLLETYPLMVNVHFEDDAQNWHVIKKEQLHG--LDTTRATSFVFYLNQPSPLWDKWELRQLR 128 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1502.2990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1502.2990.1 >prot_H-paniculata_contig1502.2990.1 ID=prot_H-paniculata_contig1502.2990.1|Name=mRNA_H-paniculata_contig1502.2990.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=238bp MNNSFATSSTMPVFVGPFVLSRRTRPCPTYFELSFLGNNGSTKQQVSESAback to top mRNA from alignment at H-paniculata_contig1502:15433..17403+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1502.2990.1 ID=mRNA_H-paniculata_contig1502.2990.1|Name=mRNA_H-paniculata_contig1502.2990.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1971bp|location=Sequence derived from alignment at H-paniculata_contig1502:15433..17403+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1502:15433..17403+ >mRNA_H-paniculata_contig1502.2990.1 ID=mRNA_H-paniculata_contig1502.2990.1|Name=mRNA_H-paniculata_contig1502.2990.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1428bp|location=Sequence derived from alignment at H-paniculata_contig1502:15433..17403+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |