mRNA_H-paniculata_contig1502.2989.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1502.2989.1
Unique NamemRNA_H-paniculata_contig1502.2989.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1502.2989.1 vs. uniprot
Match: D7G463_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G463_ECTSI)

HSP 1 Score: 286 bits (732), Expect = 8.270e-84
Identity = 167/320 (52.19%), Postives = 217/320 (67.81%), Query Frame = 1
Query:  130 SGFHRQKRPGGSGNGSRYKSEKQPNRNLNHEFATPRVKSAAKSRKAVALLNSIVDAKDDLLKQAIVSMDRSARNHLISKNNDFVKFEEQRKKQREEFAMTRKTTTAAEHKFATERVKQVVRAKAASEVFEAILRSKGKRLAGMVKKIPKADKDGFLQQISGESKNVMQKLNTQAVTLCKKRNRG-KKNVDAARYIRGEVMVLRRRVTEDVQNVIQEKDQELEKFVANMDQEQMERTLTDFVPSGMDDLSVWKRDRQKRAWKRLSAFGLVRDDPSLYQQWKQQRQVGKSIQQRACKIHEVLGSTCAADAARRPPWSADLHY 1086
            SG H+Q R  G G+GS   S++ P ++L+H F TPRVKSAAKSR+AV+LLN IV  KD LLK AI  M+R  +  L SKNNDF+KFE QR KQREEF  T+   T AEH  AT+R++Q  RAK   E  +   + + K L   VK+IPK+ +D F++++SG +K   +     A+++   R R  +KN+D  RY R EVM L RRV  DVQ  IQ KD EL K VA MD+E++ R L DF P+G +D+++WKRDR+KR+W+RLSAFG+VR+DPSLY+QW QQR    + Q        +LG+TCA DAARRPPWS DLHY
Sbjct:   91 SGTHKQ-REHGKGDGS---SKQPPPKSLDHAFVTPRVKSAAKSRQAVSLLNRIVGEKDTLLKDAIQGMERKDKALLTSKNNDFLKFEAQRAKQREEFRQTKNNRTVAEHPHATKRIRQEARAKTTLEELKERGQKRRKALTTSVKRIPKSQRDSFVRKVSGVTKGSGKACTENALSMPSPRARKIQKNLDTTRYARAEVMGLSRRVKADVQRAIQVKDDELGKMVAMMDEEEL-RALADFGPTGKEDINLWKRDRRKRSWRRLSAFGMVRNDPSLYRQWAQQRYQRLASQAEGTNTDRMLGTTCATDAARRPPWSTDLHY 405          
BLAST of mRNA_H-paniculata_contig1502.2989.1 vs. uniprot
Match: A0A6H5JGV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGV0_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 3.850e-42
Identity = 151/427 (35.36%), Postives = 207/427 (48.48%), Query Frame = 1
Query:  463 ATERVKQVVRAKAASEVFEAILRSKGKRLAGMVKKIPKADKDGFLQQISGESKNVMQKLNTQAVTLCKKRNRG---KKNVDAARYIRGEVMVLRRRVTEDVQNVIQEKDQELEKFVANMDQEQMERTLTDFVPSGMDDLSVWKRDRQKRAWKRLSAFGLVRDDPSLYQQWKQQRQVGKSIQQRACKIHEVLGSTCAADAARRPPWSADLHYVRPPSPRKLTATCKTVEGDLH-KNASDRPQTAGGTRTPESDPSEVEEGETTNDSKTNIRSSSGRRVVIARARPVSAPPVQRGTISRRLIARGTALAPTPPEAPPPASSRSCSLARLARVFYQSSVASTMS--GGHHIAQEGISVDTEQLTNTSSSRSTEFHVGNRPA---GSRRRRENINNSTTST------GRSRPEDGLETAEQRLEEVRLLLA 1698
            AT RV+ + R++    VF +I+ +  K+L G V  + K                        A+   +++++     KN D  +++ G    L RRV  DVQ  IQ KD EL K VA MD+E++ R L DF P+G +D+++WKRDR+KR+W+RLSAFG+VR+DPSLY+QW QQR    + Q        +LG+TCA DAARRPPWS DLHY            C+  +     K    R Q A     P SD S +  G           SS      +A+ RP SAP      +S R   R TA  P              SLARLARVFYQS+VAST S  G     Q+  S++         + S  F V ++P    G   + ++   +TTS       G +     L+  E+R+E VRLL A
Sbjct:   61 ATARVQHMERSREMVSVFNSIVYAHDKQLKGAVLTLTKQQXXXXXXXXXXXXXXXXXXXXXXAIQGMERKDKALLTSKNNDFLKFVMG----LSRRVKADVQRAIQVKDYELGKMVAMMDEEEL-RALVDFGPTGKEDINLWKRDRRKRSWRRLSAFGMVRNDPSLYRQWAQQRYQRLASQAEVTNTDRMLGTTCATDAARRPPWSTDLHYSH---------RCRAQQQQPGIKQQQQRQQRASIADLPVSDESSIATGLGRLKCVHTAPSSRHPARAVAKNRPASAPSGAVERVSPRQDQRETARTP--------------SLARLARVFYQSTVASTASTLGECSSRQQPSSIEYLSGEIPDPAESVCFQVSSQPEAHEGEASKDDSHAQTTTSVVHGERNGDTIRSSALDGVEKRMESVRLLWA 459          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1502.2989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G463_ECTSI8.270e-8452.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGV0_9PHAE3.850e-4235.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1502contigH-paniculata_contig1502:8676..12732 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score288.5
Seed ortholog evalue7.2e-75
Seed eggNOG ortholog2880.D7G463
Preferred nameRPS7
KEGG koko:K02993,ko:K11592
KEGG Pathwayko03010,ko05206,map03010,map05206
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000956,GO:0001838,GO:0001841,GO:0001843,GO:0002009,GO:0002181,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0003730,GO:0003735,GO:0004857,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0007399,GO:0008104,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0014020,GO:0015031,GO:0015833,GO:0015935,GO:0016070,GO:0016071,GO:0016072,GO:0016331,GO:0019222,GO:0019439,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0021915,GO:0022613,GO:0022626,GO:0022627,GO:0023051,GO:0023056,GO:0030097,GO:0030154,GO:0030162,GO:0030234,GO:0030684,GO:0030686,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031647,GO:0031974,GO:0031981,GO:0032040,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035148,GO:0035239,GO:0035295,GO:0042176,GO:0042177,GO:0042254,GO:0042274,GO:0042886,GO:0042981,GO:0043009,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045861,GO:0046483,GO:0046700,GO:0046907,GO:0048027,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048583,GO:0048584,GO:0048598,GO:0048646,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0051438,GO:0051444,GO:0051641,GO:0051649,GO:0051726,GO:0055105,GO:0055106,GO:0060255,GO:0060429,GO:0060562,GO:0060606,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072175,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0098772,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901796,GO:1901798,GO:1902253,GO:1902255,GO:1902531,GO:1902533,GO:1903050,GO:1903051,GO:1903320,GO:1903321,GO:1903362,GO:1903363,GO:1904666,GO:1904667,GO:1990904,GO:1990948,GO:2000058,GO:2000059,GO:2001233,GO:2001235,GO:2001242,GO:2001244
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsKOG3320@1,KOG3320@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03036
Exons8
Model size1830
Cds size1818
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929204.8235884-CDS-H-paniculata_contig1502:8675..90181622929204.8235884-CDS-H-paniculata_contig1502:8675..9018Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1502 8676..9018 -
1691480769.2214305-CDS-H-paniculata_contig1502:8675..90181691480769.2214305-CDS-H-paniculata_contig1502:8675..9018Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1502 8676..9018 -
1622929204.8370624-CDS-H-paniculata_contig1502:9177..96621622929204.8370624-CDS-H-paniculata_contig1502:9177..9662Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1502 9178..9662 -
1691480769.2323816-CDS-H-paniculata_contig1502:9177..96621691480769.2323816-CDS-H-paniculata_contig1502:9177..9662Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1502 9178..9662 -
1622929204.8502066-CDS-H-paniculata_contig1502:10032..103141622929204.8502066-CDS-H-paniculata_contig1502:10032..10314Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1502 10033..10314 -
1691480769.2406073-CDS-H-paniculata_contig1502:10032..103141691480769.2406073-CDS-H-paniculata_contig1502:10032..10314Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1502 10033..10314 -
1622929204.8606837-CDS-H-paniculata_contig1502:10758..108751622929204.8606837-CDS-H-paniculata_contig1502:10758..10875Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1502 10759..10875 -
1691480769.2545774-CDS-H-paniculata_contig1502:10758..108751691480769.2545774-CDS-H-paniculata_contig1502:10758..10875Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1502 10759..10875 -
1622929204.8704548-CDS-H-paniculata_contig1502:11149..112691622929204.8704548-CDS-H-paniculata_contig1502:11149..11269Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1502 11150..11269 -
1691480769.2726233-CDS-H-paniculata_contig1502:11149..112691691480769.2726233-CDS-H-paniculata_contig1502:11149..11269Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1502 11150..11269 -
1622929204.880602-CDS-H-paniculata_contig1502:11480..115761622929204.880602-CDS-H-paniculata_contig1502:11480..11576Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1502 11481..11576 -
1691480769.2815347-CDS-H-paniculata_contig1502:11480..115761691480769.2815347-CDS-H-paniculata_contig1502:11480..11576Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1502 11481..11576 -
1622929204.8949296-CDS-H-paniculata_contig1502:11988..122441622929204.8949296-CDS-H-paniculata_contig1502:11988..12244Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1502 11989..12244 -
1691480769.2895913-CDS-H-paniculata_contig1502:11988..122441691480769.2895913-CDS-H-paniculata_contig1502:11988..12244Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1502 11989..12244 -
1622929204.9859672-CDS-H-paniculata_contig1502:12601..127201622929204.9859672-CDS-H-paniculata_contig1502:12601..12720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1502 12602..12720 -
1691480769.2993853-CDS-H-paniculata_contig1502:12601..127201691480769.2993853-CDS-H-paniculata_contig1502:12601..12720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1502 12602..12720 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929205.004433-UTR-H-paniculata_contig1502:12720..127321622929205.004433-UTR-H-paniculata_contig1502:12720..12732Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1502 12721..12732 -
1691480769.3107564-UTR-H-paniculata_contig1502:12720..127321691480769.3107564-UTR-H-paniculata_contig1502:12720..12732Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1502 12721..12732 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1502.2989.1prot_H-paniculata_contig1502.2989.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1502 8676..12720 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1502.2989.1

>prot_H-paniculata_contig1502.2989.1 ID=prot_H-paniculata_contig1502.2989.1|Name=mRNA_H-paniculata_contig1502.2989.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=606bp
MVGIFNKIVRSHDLQLYRAVHKLTQEQRDRIVRVNHEQFSGFHRQKRPGG
SGNGSRYKSEKQPNRNLNHEFATPRVKSAAKSRKAVALLNSIVDAKDDLL
KQAIVSMDRSARNHLISKNNDFVKFEEQRKKQREEFAMTRKTTTAAEHKF
ATERVKQVVRAKAASEVFEAILRSKGKRLAGMVKKIPKADKDGFLQQISG
ESKNVMQKLNTQAVTLCKKRNRGKKNVDAARYIRGEVMVLRRRVTEDVQN
VIQEKDQELEKFVANMDQEQMERTLTDFVPSGMDDLSVWKRDRQKRAWKR
LSAFGLVRDDPSLYQQWKQQRQVGKSIQQRACKIHEVLGSTCAADAARRP
PWSADLHYVRPPSPRKLTATCKTVEGDLHKNASDRPQTAGGTRTPESDPS
EVEEGETTNDSKTNIRSSSGRRVVIARARPVSAPPVQRGTISRRLIARGT
ALAPTPPEAPPPASSRSCSLARLARVFYQSSVASTMSGGHHIAQEGISVD
TEQLTNTSSSRSTEFHVGNRPAGSRRRRENINNSTTSTGRSRPEDGLETA
EQRLEEVRLLLAASQLSAEAVTRNIMSGYFERKRAREPNRRKREKAHISS
RVPQPP
back to top

mRNA from alignment at H-paniculata_contig1502:8676..12732-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1502.2989.1 ID=mRNA_H-paniculata_contig1502.2989.1|Name=mRNA_H-paniculata_contig1502.2989.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4057bp|location=Sequence derived from alignment at H-paniculata_contig1502:8676..12732- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGATTCCAGACTATGGTGGGTATTTTCAACAAAATTGTGCGGTCACACGA TCTTCAACTTTACAGAGCTGTGCACAAGCTGACACAGGAACAAAGGGATC GGATAGTACGTGTGAACCACGAGCAGTTCAGGTGATCCGCATTCAGGGTG GAGGAGGTTGTTCGAATGTAACTCTAGCTTCTCCGCTTTTTTAGTTAGAC ATCACGCCGCTGCCCTTCACTAGAAAGATATATGTGCGAAAAAAGCCCTG GTACTTGGAGCATTCCACAATTATCCTGTAAGGTGCAAATTTTGGAGCAC CGAACCAGGACCAAGTCCACCGTCGAAGCAAATAGGTAGCACATTCGGTG TGACCAGGCAGTTAGCTAGGTAGTCGAGCGATGATTTATTGGGGCGCCGT GGAAGAACATGTTTCCTTTTATGCGCGCCGGTCTTTAATGGAGACATACT ACACCGCTGCTACCGCCATATTTTCTGCACTCCTACAGTGGATTTCACAG GCAAAAAAGACCTGGAGGAAGCGGAAACGGTTCGCGATATAAGTCAGAAA AACAACCGAATCGTAACTTGAATCACGAGTTCGCCACTCCGCGTGTGAAA AGCGCGGCAAAAAGCAGGAAAGCTGTTGCTCTCCTTAATAGTATTGTAGA TGCCAAGGACGATCTTTTGAAGCAGGCGATTGTCTCTATGGATCGGAGTG CGCGCAACCACCTCATCAGCAAGAACAACGACTTCGTAAAATTCGTGAGT ACCCCCGTTTGATTTCTAGGGTACGATTCATGGTCGCTTGTCGTGATGTG CACAACATAGTTATGTATTTCGGATTCCAGGACCCCTGCAACGTCTCTCG TGCGACCAAGAACTAAGCAATCGACTCGATTAAAGTCAACGTATCTGCGG GAGCTTGAGGAGCATCAGCTGATCACACGGTGTCGGTGTTTTCGCTCGAA TACCCGTCCAAACTCCTTAGATTTGACCTAAGACGGTTGGCATTGACTAT AATCCGTTAACAAGTGTAATGCTGGCCCCGCTACACGCTGCCGTTAACCC GCGTGCCGTTTTTGTCATCCTGGATAGCTACCAGGTTCTCCAGGTCGTTT GTAAGCACTACGTTTTGTCGGAGTTTCCCAACCCGTACTTGGATATGAAT TGACAGGAGGAACAACGGAAGAAACAGCGAGAAGAGTTCGCGATGACCAG AAAGACTACCACTGCTGCCGAACACAAATTTGCTACGGAAAGGGTGAAGC AGGTTCGCTCCTTCAATTAATTGAATTGGTTGGATGTAGACCTGGCAGCA ACATAGCTTGTCTTGCAACCATTCGAGGTATCAACATACTGTCCAAGTGT TTCCGTGAGCTCATATGTTGCCTTTTTGTCGGCAAGGGAAATGAAATCGT CCCCACCGTTCTGTTCGTGCGAATGACACTGCTACTGGGTCGATGCCCTT GGTGTGGCAACAGGTGGTAAGGGCGAAGGCAGCTTCTGAGGTATTCGAAG CGATACTTCGGTCAAAAGGCAAGCGACTGGCTGGTATGGTTAAAAAAATA CCCAAGGCCGACAAGGATGGTTTTCTTCAACAGGTGGAGAAGTTCGTGCA ATCCAGACCGTGGAGTCCGTTGTTTTTTGTGCCTCCGAGTTCACAGCATG GTAGAGCAATTTAATGACAACGTTTTGGTGGTACTCCTTCCCCAGACGAG AGTATACGCACCTCTCGGAGAGAATCGTATCAGATGTCGCCCCATTTTTT TGCTATTGCTCCGGCTGTCGAGCTGTCCTGTCAGATATATCTCATAGCAC CTATTTTATTAATCGGTCTACATTTTACGTTCTCCGTGTTTCAATTGTTT TATACAGATATCAGGCGAAAGTAAGAACGTGATGCAGAAACTCAACACGC AAGCTGTCACATTGTGCAAGAAGCGAAATAGGGGCAAGAAAAACGTGGAT GCCGCACGGTATATTCGAGGAGAGGTAGGTATGTCGAAAGTACTACAAGG TCCGAACGTGCAAAACAATGACAGGAGAGGTGGATGGGAGTTGGAAAACT TGTACTGCTGGGGAAAACTAGTTCTAACAATCACTGGTTCGTTAGAACAG CTAATCTCATCCCCGAACTGAGAAGGCGTGTACGCAACAAGCTGAAATAC CGTAGATAGAATGGAGTGACTTACGCTTGAGATTTTTTCAGCTGCTGCCT CACGAGGAAGAGGTGGGGTCACCTCTTAGATATATTGGGTGGATTAGGCA CTACTACGTATTGTCTTAGACCGCCGCAGTGCTACGTACCAAACACACCG GGGGGAACGGCAGAGACATGATTCCGTATGCACGTCCTCCGCTGCCCATG AGCCAGTGCAGCCTCGCTCATCTAATGAGCATCATGGATCTAATGCACTC GCTCTTCCCACTACGTAGGTAATGGTCTTGAGAAGACGAGTGACGGAGGA TGTTCAAAACGTCATTCAAGAGAAGGACCAGGAGCTCGAAAAATTCGTTG CGAACATGGACCAAGAGCAGATGGAGCGAACTCTAACAGACTTTGTTCCG TCCGGGATGGATGACCTTTCCGTGTGGAAACGAGATCGCCAGAAACGGGC TTGGAAACGCCTGTCTGCCTTCGGCCTAGTTCGAGACGACCCGTCTTTGT ATCAACAGTGGAAGCAACAGAGGCAAGTTGGCAAGTCAATCCAACAGCGT GTTAAGGAAGAGCTACGAAAAATACAAAATAACGCTTTTCGGTGGGGAGG AACTTTATCGGGATCATACCGGGATTCAGACGCAGTGTTGGTGCTGGGAG GGAACGTTTGCTGCTTGGTCAAGTATGACGGTGTTTGCGCAACGATTTTG AGCATTGCTCTACTATGCGCACTCCCACTCGAACTAACCGAAATCGCGCT GGCCGGGCTGCCATGAGGATGAGAAAATCATACAACAATAAGTTTTTCTA CCAGGAGAGAAGGCAGGATGAACTTAGATCCTTGATCCCTTCTCGGAAAC GCCCCTGTAATATGTCTTCATCTCATTCAGGCACCACCGAGCAAGGTCGG ACAACCCAGAGCTCGGACAGGCATGCAAAATACACGAGGTGCTTGGTTCA ACATGCGCTGCCGATGCCGCTCGTCGCCCACCTTGGTCAGCTGATTTGCA CTATGTTCGTCCCCCGTCACCACGAAAACTCACCGCGACATGCAAGACAG TCGAAGGTGACCTGCACAAGAACGCTTCAGACAGACCTCAGACCGCTGGA GGAACGAGAACGCCGGAATCAGATCCAAGCGAAGTCGAAGAAGGCGAGAC TACAAATGATTCTAAGACTAACATTCGATCATCATCTGGACGAAGGGTGG TAATCGCGCGAGCTAGACCAGTTTCAGCACCCCCGGTTCAGCGTGGCACT ATCTCCCGCCGTCTCATCGCGCGCGGCACGGCTCTTGCACCAACCCCTCC TGAAGCACCACCGCCGGCAAGCTCACGATCTTGTAGTCTAGCGCGACTTG CCCGCGTATTCTACCAATCGAGCGTGGCGTCAACAATGTCTGGCGGGCAT CATATGTCGGAAACAAGCAGAGGCGCCCGAGATCACCTCCATTCGCAGCG AGGAAGCACAGTGCAGATATCGCAGCAATCATCATCATGTCTTCTTGCGA CACAAGTTACGCCCGAATTTTCCCCTGCAATTAGGCATACCTATTTGAGA AAAGGGGACCAAAGTGCACAGGAAGGCATTAGTGTCGATACAGAGCAGCT CACAAATACTAGCAGCAGTAGATCGACGGAGTTCCACGTTGGAAATAGAC CAGCAGGAAGCAGGAGAAGAAGAGAGAACATCAACAATAGCACTACAAGC ACTGGGAGAAGCAGACCGGAGGATGGTCTAGAGACAGCTGAGCAGCGACT AGAGGAAGTACGACTGCTGTTGGCAGCGTCGCAGCTCTCGGCAGAGGCTG TGACCAGAAACATTATGAGTGGGTACTTCGAGCGGAAGCGTGCGAGAGAG CCGAATCGCCGAAAACGAGAGAAAGCACACATATCGTCGCGTGTGCCGCA GCCACCT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1502:8676..12732-

>mRNA_H-paniculata_contig1502.2989.1 ID=mRNA_H-paniculata_contig1502.2989.1|Name=mRNA_H-paniculata_contig1502.2989.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3636bp|location=Sequence derived from alignment at H-paniculata_contig1502:8676..12732- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGGTATTTTCAACAAAATTGTGCGGTCACACGATCTTCAACTTTA
CAGAGCTGTGCACAAGCTGACACAGGAACAAAGGGATCGGATAGTACGTG
TGAACCACGAGCAGTTCAGATGGTGGGTATTTTCAACAAAATTGTGCGGT
CACACGATCTTCAACTTTACAGAGCTGTGCACAAGCTGACACAGGAACAA
AGGGATCGGATAGTACGTGTGAACCACGAGCAGTTCAGTGGATTTCACAG
GCAAAAAAGACCTGGAGGAAGCGGAAACGGTTCGCGATATAAGTCAGAAA
AACAACCGAATCGTAACTTGAATCACGAGTTCGCCACTCCGCGTGTGAAA
AGCGCGGCAAAAAGCAGGAAAGCTGTTGCTCTCCTTAATAGTATTGTAGA
TGCCAAGGACGATCTTTTGAAGCAGGCGATTGTCTCTATGGATCGGAGTG
CGCGCAACCACCTCATCAGCAAGAACAACGACTTCGTAAAATTCTGGATT
TCACAGGCAAAAAAGACCTGGAGGAAGCGGAAACGGTTCGCGATATAAGT
CAGAAAAACAACCGAATCGTAACTTGAATCACGAGTTCGCCACTCCGCGT
GTGAAAAGCGCGGCAAAAAGCAGGAAAGCTGTTGCTCTCCTTAATAGTAT
TGTAGATGCCAAGGACGATCTTTTGAAGCAGGCGATTGTCTCTATGGATC
GGAGTGCGCGCAACCACCTCATCAGCAAGAACAACGACTTCGTAAAATTC
GAGGAACAACGGAAGAAACAGCGAGAAGAGTTCGCGATGACCAGAAAGAC
TACCACTGCTGCCGAACACAAATTTGCTACGGAAAGGGTGAAGCAGGAGG
AACAACGGAAGAAACAGCGAGAAGAGTTCGCGATGACCAGAAAGACTACC
ACTGCTGCCGAACACAAATTTGCTACGGAAAGGGTGAAGCAGGTGGTAAG
GGCGAAGGCAGCTTCTGAGGTATTCGAAGCGATACTTCGGTCAAAAGGCA
AGCGACTGGCTGGTATGGTTAAAAAAATACCCAAGGCCGACAAGGATGGT
TTTCTTCAACAGGTGGTAAGGGCGAAGGCAGCTTCTGAGGTATTCGAAGC
GATACTTCGGTCAAAAGGCAAGCGACTGGCTGGTATGGTTAAAAAAATAC
CCAAGGCCGACAAGGATGGTTTTCTTCAACAGATATCAGGCGAAAGTAAG
AACGTGATGCAGAAACTCAACACGCAAGCTGTCACATTGTGCAAGAAGCG
AAATAGGGGCAAGAAAAACGTGGATGCCGCACGGTATATTCGAGGAGAGA
TATCAGGCGAAAGTAAGAACGTGATGCAGAAACTCAACACGCAAGCTGTC
ACATTGTGCAAGAAGCGAAATAGGGGCAAGAAAAACGTGGATGCCGCACG
GTATATTCGAGGAGAGGTAATGGTCTTGAGAAGACGAGTGACGGAGGATG
TTCAAAACGTCATTCAAGAGAAGGACCAGGAGCTCGAAAAATTCGTTGCG
AACATGGACCAAGAGCAGATGGAGCGAACTCTAACAGACTTTGTTCCGTC
CGGGATGGATGACCTTTCCGTGTGGAAACGAGATCGCCAGAAACGGGCTT
GGAAACGCCTGTCTGCCTTCGGCCTAGTTCGAGACGACCCGTCTTTGTAT
CAACAGTGGAAGCAACAGAGGCAAGTTGGCAAGTCAATCCAACAGCGTGT
AATGGTCTTGAGAAGACGAGTGACGGAGGATGTTCAAAACGTCATTCAAG
AGAAGGACCAGGAGCTCGAAAAATTCGTTGCGAACATGGACCAAGAGCAG
ATGGAGCGAACTCTAACAGACTTTGTTCCGTCCGGGATGGATGACCTTTC
CGTGTGGAAACGAGATCGCCAGAAACGGGCTTGGAAACGCCTGTCTGCCT
TCGGCCTAGTTCGAGACGACCCGTCTTTGTATCAACAGTGGAAGCAACAG
AGGCAAGTTGGCAAGTCAATCCAACAGCGTGCATGCAAAATACACGAGGT
GCTTGGTTCAACATGCGCTGCCGATGCCGCTCGTCGCCCACCTTGGTCAG
CTGATTTGCACTATGTTCGTCCCCCGTCACCACGAAAACTCACCGCGACA
TGCAAGACAGTCGAAGGTGACCTGCACAAGAACGCTTCAGACAGACCTCA
GACCGCTGGAGGAACGAGAACGCCGGAATCAGATCCAAGCGAAGTCGAAG
AAGGCGAGACTACAAATGATTCTAAGACTAACATTCGATCATCATCTGGA
CGAAGGGTGGTAATCGCGCGAGCTAGACCAGTTTCAGCACCCCCGGTTCA
GCGTGGCACTATCTCCCGCCGTCTCATCGCGCGCGGCACGGCTCTTGCAC
CAACCCCTCCTGAAGCACCACCGCCGGCAAGCTCACGATCTTGTAGTCTA
GCGCGACTTGCCCGCGTATTCTACCAATCGAGCGTGGCGTCAACAATGTC
TGGCGGGCATCATATGCATGCAAAATACACGAGGTGCTTGGTTCAACATG
CGCTGCCGATGCCGCTCGTCGCCCACCTTGGTCAGCTGATTTGCACTATG
TTCGTCCCCCGTCACCACGAAAACTCACCGCGACATGCAAGACAGTCGAA
GGTGACCTGCACAAGAACGCTTCAGACAGACCTCAGACCGCTGGAGGAAC
GAGAACGCCGGAATCAGATCCAAGCGAAGTCGAAGAAGGCGAGACTACAA
ATGATTCTAAGACTAACATTCGATCATCATCTGGACGAAGGGTGGTAATC
GCGCGAGCTAGACCAGTTTCAGCACCCCCGGTTCAGCGTGGCACTATCTC
CCGCCGTCTCATCGCGCGCGGCACGGCTCTTGCACCAACCCCTCCTGAAG
CACCACCGCCGGCAAGCTCACGATCTTGTAGTCTAGCGCGACTTGCCCGC
GTATTCTACCAATCGAGCGTGGCGTCAACAATGTCTGGCGGGCATCATAT
TGCACAGGAAGGCATTAGTGTCGATACAGAGCAGCTCACAAATACTAGCA
GCAGTAGATCGACGGAGTTCCACGTTGGAAATAGACCAGCAGGAAGCAGG
AGAAGAAGAGAGAACATCAACAATAGCACTACAAGCACTGGGAGAAGCAG
ACCGGAGGATGGTCTAGAGACAGCTGAGCAGCGACTAGAGGAAGTACGAC
TGCTGTTGGCAGCGTCGCAGCTCTCGGCAGAGGCTGTGACCAGAAACATT
ATGAGTGGGTACTTCGAGCGGAAGCGTGCGAGAGAGCCGAATCGCCGAAA
ACGAGAGAAAGCACACATATCGTCGCGTGTGCCGCAGCCACCTTGCACAG
GAAGGCATTAGTGTCGATACAGAGCAGCTCACAAATACTAGCAGCAGTAG
ATCGACGGAGTTCCACGTTGGAAATAGACCAGCAGGAAGCAGGAGAAGAA
GAGAGAACATCAACAATAGCACTACAAGCACTGGGAGAAGCAGACCGGAG
GATGGTCTAGAGACAGCTGAGCAGCGACTAGAGGAAGTACGACTGCTGTT
GGCAGCGTCGCAGCTCTCGGCAGAGGCTGTGACCAGAAACATTATGAGTG
GGTACTTCGAGCGGAAGCGTGCGAGAGAGCCGAATCGCCGAAAACGAGAG
AAAGCACACATATCGTCGCGTGTGCCGCAGCCACCT
back to top