mRNA_H-paniculata_contig15007.2980.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15007.2980.1
Unique NamemRNA_H-paniculata_contig15007.2980.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig15007.2980.1 vs. uniprot
Match: A0A6H5GI29_9HEMI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GI29_9HEMI)

HSP 1 Score: 139 bits (351), Expect = 4.890e-32
Identity = 79/239 (33.05%), Postives = 131/239 (54.81%), Query Frame = 1
Query:    1 LIDNGVWTQMERPNNKLVVSTMMLYRRTIGEDGNVEKYKCRLVAHGNRQI*SVHFQEASSSASAVTRTKMTLSLAAIQDWELRHVDFERAYLQAPVDEEILVKIPVEYWEFPGAVGCLDKAICRLVQAGRCWSMKVTADITAKEFEQSYTDPCVFLKILDREVVAVIIIFVDDLLMSTKGPKTMDELLVDLRSDHELKGLGDAMYYLGCHKTRDRQKRKLRIDQHLYARSKAERFGISN 717
            L+ N  +  ++ P  K  +S   +Y+  I E     +YK RLV  G  Q+  + FQE  S     +  +  +S+AA++DW++ H+D + AYL   ++EEI V+ P  + E  G V  L KA+  L QAGRCW+ K+T  +   +F +S +DPC+F++  +  +V ++ ++VDD+++ +       ++   L    E+K LG     LG + TRDR +R+L IDQ  Y     +RF + N
Sbjct:  251 LVKNNTYEVVDLPPGKKTLSMKWVYK--IKETEGDRRYKARLVVRGCAQVPGLDFQETYSPVVKYSSLRFLMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAGRCWNEKITEVLAQMKFHRSKSDPCIFVRNTESAIV-IVALWVDDVIVFSDNAGEKSKVKSSLAHHFEMKDLGPIHRCLGMNVTRDRARRQLSIDQTHYIEQVLKRFSMEN 486          
BLAST of mRNA_H-paniculata_contig15007.2980.1 vs. uniprot
Match: A0A6H5GGZ1_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GGZ1_9HEMI)

HSP 1 Score: 139 bits (351), Expect = 7.910e-32
Identity = 79/239 (33.05%), Postives = 131/239 (54.81%), Query Frame = 1
Query:    1 LIDNGVWTQMERPNNKLVVSTMMLYRRTIGEDGNVEKYKCRLVAHGNRQI*SVHFQEASSSASAVTRTKMTLSLAAIQDWELRHVDFERAYLQAPVDEEILVKIPVEYWEFPGAVGCLDKAICRLVQAGRCWSMKVTADITAKEFEQSYTDPCVFLKILDREVVAVIIIFVDDLLMSTKGPKTMDELLVDLRSDHELKGLGDAMYYLGCHKTRDRQKRKLRIDQHLYARSKAERFGISN 717
            L+ N  +  ++ P  K  +S   +Y+  I E     +YK RLV  G  Q+  + FQE  S     +  +  +S+AA++DW++ H+D + AYL   ++EEI V+ P  + E  G V  L KA+  L QAGRCW+ K+T  +   +F +S +DPC+F++  +  +V ++ ++VDD+++ +       ++   L    E+K LG     LG + TRDR +R+L IDQ  Y     +RF + N
Sbjct:  856 LVKNNTYEVVDLPPGKKTLSMKWVYK--IKETEGDRRYKARLVVRGCAQVPGLDFQETYSPVVKYSSLRFLMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAGRCWNEKITEVLAQMKFHRSKSDPCIFVRNTESAIV-IVALWVDDVIVFSDNAGEKSKVKSSLAHHFEMKDLGPIHRCLGMNVTRDRARRQLSIDQTHYIEQVLKRFSMEN 1091          
BLAST of mRNA_H-paniculata_contig15007.2980.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY)

HSP 1 Score: 137 bits (344), Expect = 6.500e-31
Identity = 79/260 (30.38%), Postives = 135/260 (51.92%), Query Frame = 1
Query:   13 GVWTQMERPNNKLVVSTMMLYRRTIGEDGNVEKYKCRLVAHGNRQI*SVHFQEASSSASAVTRTKMTLSLAAIQDWELRHVDFERAYLQAPVDEEILVKIPVEYWEFPGAVGCLDKAICRLVQAGRCWSMKVTADITAKEFEQSYTDPCVFLKILDREVVAVIIIFVDDLLMSTKGPKTMDELLVDLRSDHELKGLGDAMYYLGCHKTRDRQKRKLRIDQHLYARSKAERFGISNTSVLPATANTMKKYYRPKTSEEAEE 792
            G W   + P ++  V    +++R   ++G V KYK RLVA G  QI  + F E  +    +   +  L+LA + +WE+  +D + AYL   + EEI ++ P  + +  G +  L K +  L Q+GR W+ K+  ++T   +++   DPCV+L       V +I ++VDDLL+ T  PK M+EL  DL+   E+  LG+    +G    RDR+  K++I Q  Y  S  +R+ + N + +    +    +     +EEA++
Sbjct:  937 GTWELQDLPKDRNAVGCKWVFQRKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRICRLRKTLYGLKQSGREWNRKLHRELTELGYKRLEADPCVYLWERKEGEVQIITVWVDDLLLFTNSPKLMEELKRDLQDLFEVTDLGEPQKIVGIEIERDREAGKIQISQQHYIESILKRYQLENANAVGMPLDPNVAFTAEDENEEADD 1196          
BLAST of mRNA_H-paniculata_contig15007.2980.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 134 bits (337), Expect = 5.270e-30
Identity = 75/234 (32.05%), Postives = 128/234 (54.70%), Query Frame = 1
Query:   13 GVWTQMERPNNKLVVSTMMLYRRTIGEDGNVEKYKCRLVAHGNRQI*SVHFQEASSSASAVTRTKMTLSLAAIQDWELRHVDFERAYLQAPVDEEILVKIPVEYWEFPGAVGCLDKAICRLVQAGRCWSMKVTADITAKEFEQSYTDPCVFLKILDREVVAVIIIFVDDLLMSTKGPKTMDELLVDLRSDHELKGLGDAMYYLGCHKTRDRQKRKLRIDQHLYARSKAERFGIS 714
            GV+ ++ RP ++ ++ +  +++   G DG VEKYK RLVA G  Q+  + + E  +  +     ++ L+LAA  DWE+  +D + A+L   ++EEI +K+P  +     AV  L KA+  L QA R W  K++A++    F +   D CVF K +DR    +I ++VDD ++ +     + +   DL S  ++  LG+  + L    TR+RQ+R +R+ Q  Y     ER G++
Sbjct: 1025 GVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAELKTLGFTRLQADHCVFYKNMDRHP-PIIAVYVDDNMVLSDSLDLVTKTKSDLGSRFDMTDLGEVCWILNMEVTRNRQERTIRLSQSQYIEDILERHGMA 1257          
BLAST of mRNA_H-paniculata_contig15007.2980.1 vs. uniprot
Match: A0A401GXA0_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GXA0_9APHY)

HSP 1 Score: 125 bits (315), Expect = 5.730e-30
Identity = 75/226 (33.19%), Postives = 120/226 (53.10%), Query Frame = 1
Query:   13 GVWTQMERPNNKLVVSTMMLYRRTIGEDGNVEKYKCRLVAHGNRQI*SVHFQEASSSASAVTRTKMTLSLAAIQDWELRHVDFERAYLQAPVDEEILVKIPVEYWEFPGAVGCLDKAICRLVQAGRCWSMKVTADITAKEFEQSYTDPCVFLKILDREVVAVIIIFVDDLLMSTKGPKTMDELLVDLRSDHELKGLGDAMYYLGCHKTRDRQKRKLRIDQHLYARS 690
            G W   + P ++  V    ++++   ++G V KYK RLVA G  QI  + F E  +    +   +  L+LA + +WE+  +D + AYL   + EEI ++ P  + +  G V  L K +  L Q+G  W+ K+   +T   ++Q   DPCV+L+    EV  +I ++VDDLL+ T  PK M+EL  DL+   E+  LG+    +G    RDR+  K++I Q  Y  S
Sbjct:    2 GTWELQDLPKDRNAVGCKWVFQKKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVHLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFNDGSGHVCRLHKTLYGLKQSGHKWNRKLHRKLTELGYKQLEADPCVYLQEQKGEV-QIITVWVDDLLLFTNSPKLMEELKRDLQDLFEVTDLGEPQKIIGFEIERDREAGKIQILQQHYIES 226          
BLAST of mRNA_H-paniculata_contig15007.2980.1 vs. uniprot
Match: A0A6G0HFF8_LARCR (Copia protein Gag-int-pol protein Copia VLP protein Copia protease n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0HFF8_LARCR)

HSP 1 Score: 125 bits (313), Expect = 1.450e-27
Identity = 78/253 (30.83%), Postives = 134/253 (52.96%), Query Frame = 1
Query:    1 LIDNGVWTQMERPNNKLVVSTMMLYRRTIGEDGNVEKYKCRLVAHGNRQI*SVHFQEASSSASAVTRTKMTLSLAAIQDWELRHVDFERAYLQAPVDEEILVKIPVEYWEFPGA---VGCLDKAICRLVQAGRCWSMKVTADITAKEFEQSYTDPCVFLKILDREVVAVIIIFVDDLLMSTKGPKTMDELLVDLRSDHELKGLGDAMYYLGCHKTRDRQKRKLRIDQHLYARSKAERFGI--SNTSVLPATAN 744
            L++N  W  +E P ++  + +  +++     DG VE+YKCRLVA G  Q   V + E  S     +  +  LS A   +  +  +D   A+L   ++EEI ++ P  Y + PG    V  L K+I  L Q+ RCWS   T  +    F QS +DPCVF++   R+ + ++ ++VDDL++ T+  ++M EL V L+  +++K +G+  Y LG    +D+    + + Q  Y  +  +++G+  +N    PA AN
Sbjct:   24 LLENETWDLVELPKDRKPIGSRWVFKVKHHSDGEVERYKCRLVAKGYSQNYGVDYDETFSPVVRFSSIRTLLSFAVQNNLHVHQMDVVTAFLNGHLEEEIYMEQPDGYIK-PGQEHLVCKLKKSIYGLKQSPRCWSKTFTESMKDIGFNQSTSDPCVFVRA--RQELEILAVYVDDLILITESLESMTELKVALKKKYKMKDMGELSYILGISVIQDKTNNSVYLHQKHYIEAVLQKYGMDKANPVTTPADAN 273          
BLAST of mRNA_H-paniculata_contig15007.2980.1 vs. uniprot
Match: A0A401GH23_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GH23_9APHY)

HSP 1 Score: 127 bits (318), Expect = 1.580e-27
Identity = 76/257 (29.57%), Postives = 134/257 (52.14%), Query Frame = 1
Query:   19 WTQMERPNNKLVVSTMMLYRRTIGEDGNVEKYKCRLVAHGNRQI*SVHFQEASSSASAVTRTKMTLSLAAIQDWELRHVDFERAYLQAPVDEEILVKIPVEYWEFPGAVGCLDKAICRLVQAGRCWSMKVTADITAKEFEQSYTDPCVFLKILDREVVAVIIIFVDDLLMSTKGPKTMDELLVDLRSDHELKGLGDAMYYLGCHKTRDRQKRKLRIDQHLYARSKAERFGISNTSV--LPATANTMKKYYRPKTSEE 783
            W  +E P ++  V    +  +   ++G + KYK RLV  G  QI  + + E  +    +   +  L LAAI DWE+  +D + AYL   + EE+ ++ P  Y +    V  L K +  L Q+GR W++ +   +    F++ ++DPC +++I   + + ++ ++VDDLL+ T     MD+L  +LR+  E+  LG+    +G    RDR KR ++I Q  Y  S   + G++N +   +P   NT+ +   P+T +E
Sbjct: 1476 WELVEPPEDRKPVGNKWVLVKKTNKEGEIIKYKARLVVKGYSQIPGMDYTETFAPVVRLETIRAILGLAAILDWEIGQMDVKGAYLNGTLKEEVYMRQPEGYSDGTYRVCKLKKTLYGLKQSGREWNIVLNRKLLDAGFKRLFSDPCAYIRI-KGDKIEIVTVWVDDLLIFTNDCALMDQLKRELRNMFEVTDLGEPRKIVGIEIERDRSKRTIKISQTKYIESILHKNGLTNANTVGMPLDPNTVLEKEEPETDDE 1731          
BLAST of mRNA_H-paniculata_contig15007.2980.1 vs. uniprot
Match: A0A0A9Z683_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=3 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Z683_LYGHE)

HSP 1 Score: 126 bits (316), Expect = 2.580e-27
Identity = 80/271 (29.52%), Postives = 142/271 (52.40%), Query Frame = 1
Query:    4 IDNGVWTQMERPNNKLVVSTMMLYRRTIGEDGNVEKYKCRLVAHGNRQI*SVHFQEASSSASAVTRTKMTLSLAAIQDWELRHVDFERAYLQAPVDEEILVKIPVEYWEFPGAVGCLDKAICRLVQAGRCWSMKVTADITAKEFEQSYTDPCVFLKILDREVVAVIIIFVDDLLMSTKGPKTMDELLVDLRSDHELKGLGDAMYYLGCHKTRDRQKRKLRIDQHLYARSKAERFGISNTS--VLPATANT-MKKYYRPKTSEEAEEMQVFP 807
            ++NG W  ++ P  K+ +++  ++R      G + K+K RLV  G  Q   + F+E  S     +  +  L+LAA +D ++  +D   A+LQ  + EEI ++ P  Y E  G V  L K++  L QA R W++K+   +      QS  DPC++ K   +++V V + +VDDLL+ +   K   E+   L    ++  +G+A + LG   +RDR+++K+ +DQ  Y  +   RFG+ N +    P   N  + K  +P + +E ++M+  P
Sbjct:  867 LENGTWELVDLPPGKVPLNSKWVFRTKRDVTGKIVKHKARLVVKGCAQRKGLDFEETFSPVVRYSSIRYLLALAAKRDMDIHQMDAVSAFLQGDLTEEIYMRQPEGYQE-SGKVCRLRKSLYGLKQASRVWNIKLDRSLKTIGLRQSKFDPCIYYKSSQKKMVFVAV-WVDDLLIFSDDKKLTQEVKSQLMKCFKMTDIGEAKFVLGFQISRDRERKKIWMDQRAYIDNVLIRFGMENCNPAATPLDPNIKLSKDQQPSSPDERKKMEAIP 1135          
BLAST of mRNA_H-paniculata_contig15007.2980.1 vs. uniprot
Match: A0A6G0J2S8_LARCR (Copia protein Gag-int-pol protein Copia VLP protein Copia protease n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0J2S8_LARCR)

HSP 1 Score: 124 bits (311), Expect = 4.210e-27
Identity = 78/253 (30.83%), Postives = 133/253 (52.57%), Query Frame = 1
Query:    1 LIDNGVWTQMERPNNKLVVSTMMLYRRTIGEDGNVEKYKCRLVAHGNRQI*SVHFQEASSSASAVTRTKMTLSLAAIQDWELRHVDFERAYLQAPVDEEILVKIPVEYWEFPGA---VGCLDKAICRLVQAGRCWSMKVTADITAKEFEQSYTDPCVFLKILDREVVAVIIIFVDDLLMSTKGPKTMDELLVDLRSDHELKGLGDAMYYLGCHKTRDRQKRKLRIDQHLYARSKAERFGI--SNTSVLPATAN 744
            L++N  W  +E P ++  +    +++     DG VE+YKCRLVA G  Q   V + E  S     +  +  LS A   +  +  +D   A+L   ++EEI ++ P  Y + PG    V  L K+I  L Q+ RCWS   T  +    F QS +DPCVF++   R+ + ++ ++VDDL++ T+  ++M EL V L+  +++K +G+  Y LG    +D+    + + Q  Y  +  +++G+  +N    PA AN
Sbjct:  163 LLENETWDLVELPKDRKPIGQRWVFKVKHHSDGEVERYKCRLVAKGYSQNYGVDYDETFSPVVRFSSIRTLLSFAVQNNLHVHQMDVVTAFLNGHLEEEIYMEQPDGYIK-PGQEHLVCKLKKSIYGLKQSPRCWSKTFTESMKDIGFNQSTSDPCVFVRA--RQELEILAVYVDDLILITESLESMTELKVALKKKYKMKDMGELSYILGISVIQDKTNNSVYLHQKHYIEAVLQKYGMDKANPVTTPADAN 412          
BLAST of mRNA_H-paniculata_contig15007.2980.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 7.230e-27
Identity = 72/245 (29.39%), Postives = 126/245 (51.43%), Query Frame = 1
Query:   13 GVWTQM-ERPNNKLVVSTMMLYRRTIGEDGNVEKYKCRLVAHGNRQI*SVHFQEASSSASAVTRTKMTLSLAAIQDWELRHVDFERAYLQAPVDEEILVKIPVEYWEFPGAVGCLDKAICRLVQAGRCWSMKVTADITAKEFEQSYTDPCVFLKILDREVVAVIIIFVDDLLMSTKGPKTMDELLVDLRSDHELKGLGDAMYYLGCHKTRDRQKRKLRIDQHLYARSKAERFGISNTSVLPATAN 744
            G +T++ E P  +  + +  ++     E G +  +K R+VA G  QI  + F  +SS+  +    K  +++A  +  +L H D ++AY+ A + EEI ++ P       G V  +++A+  L Q GR W  +    +    +EQ   DPCVF K++D EVV +I+I+VDD+L++    +  +EL   L     +K LG+  +Y GC    D +    ++ Q  Y  S  +RF ++ T+  PA  +
Sbjct:  530 GTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQGGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGER-EELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATD 773          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15007.2980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5GI29_9HEMI4.890e-3233.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5GGZ1_9HEMI7.910e-3233.05Integrase catalytic domain-containing protein (Fra... [more]
A0A401GYH9_9APHY6.500e-3130.38Uncharacterized protein n=6 Tax=Sparassis crispa T... [more]
A0A0C2WN23_AMAMK5.270e-3032.05Integrase catalytic domain-containing protein (Fra... [more]
A0A401GXA0_9APHY5.730e-3033.19Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0HFF8_LARCR1.450e-2730.83Copia protein Gag-int-pol protein Copia VLP protei... [more]
A0A401GH23_9APHY1.580e-2729.57Uncharacterized protein n=1 Tax=Sparassis crispa T... [more]
A0A0A9Z683_LYGHE2.580e-2729.52Retrovirus-related Pol polyprotein from transposon... [more]
A0A6G0J2S8_LARCR4.210e-2730.83Copia protein Gag-int-pol protein Copia VLP protei... [more]
A0A6H5JI74_9PHAE7.230e-2729.39Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15007contigH-paniculata_contig15007:1140..2481 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.1
Seed ortholog evalue1.3e-15
Seed eggNOG ortholog164328.Phyra71619
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3QHW0@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size1342
Cds size642
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15007.2980.1prot_H-paniculata_contig15007.2980.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15007 1633..2274 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929203.8161967-UTR-H-paniculata_contig15007:1139..16321622929203.8161967-UTR-H-paniculata_contig15007:1139..1632Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15007 1140..1632 -
1691480768.8124282-UTR-H-paniculata_contig15007:1139..16321691480768.8124282-UTR-H-paniculata_contig15007:1139..1632Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15007 1140..1632 -
1622929203.843964-UTR-H-paniculata_contig15007:2274..24811622929203.843964-UTR-H-paniculata_contig15007:2274..2481Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15007 2275..2481 -
1691480768.8352518-UTR-H-paniculata_contig15007:2274..24811691480768.8352518-UTR-H-paniculata_contig15007:2274..2481Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15007 2275..2481 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929203.8282707-CDS-H-paniculata_contig15007:1632..22741622929203.8282707-CDS-H-paniculata_contig15007:1632..2274Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15007 1633..2274 -
1691480768.8242853-CDS-H-paniculata_contig15007:1632..22741691480768.8242853-CDS-H-paniculata_contig15007:1632..2274Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15007 1633..2274 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15007.2980.1

>prot_H-paniculata_contig15007.2980.1 ID=prot_H-paniculata_contig15007.2980.1|Name=mRNA_H-paniculata_contig15007.2980.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=214bp
MTLSLAAIQDWELRHVDFERAYLQAPVDEEILVKIPVEYWEFPGAVGCLD
KAICRLVQAGRCWSMKVTADITAKEFEQSYTDPCVFLKILDREVVAVIII
FVDDLLMSTKGPKTMDELLVDLRSDHELKGLGDAMYYLGCHKTRDRQKRK
LRIDQHLYARSKAERFGISNTSVLPATANTMKKYYRPKTSEEAEEMQVFP
TGRQWGRSYGRRQ*
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mRNA from alignment at H-paniculata_contig15007:1140..2481-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15007.2980.1 ID=mRNA_H-paniculata_contig15007.2980.1|Name=mRNA_H-paniculata_contig15007.2980.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1342bp|location=Sequence derived from alignment at H-paniculata_contig15007:1140..2481- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCATCGACAACGGGGTTTGGACGCAGATGGAGCGCCCGAATAACAAGCT GGTCGTGAGCACGATGATGCTCTACAGAAGGACAATCGGTGAGGACGGTA ACGTGGAGAAATACAAATGCCGCCTGGTTGCTCACGGGAACCGTCAGATC TAGAGCGTCCACTTCCAGGAAGCTTCGTCCTCTGCATCCGCAGTGACCAG AACAAAAATGACATTGTCGCTTGCGGCAATCCAGGACTGGGAACTTCGGC ACGTCGACTTTGAACGAGCGTATCTTCAGGCGCCCGTCGACGAGGAGATT CTCGTCAAAATTCCGGTAGAATACTGGGAGTTCCCAGGAGCGGTGGGGTG CCTCGACAAGGCAATTTGCAGATTGGTGCAAGCCGGCAGATGCTGGAGTA TGAAGGTTACCGCGGATATCACGGCGAAAGAGTTTGAGCAATCGTACACC GATCCGTGTGTGTTCCTCAAGATCCTAGACAGGGAGGTGGTCGCAGTCAT CATCATATTCGTGGACGACCTGTTGATGAGCACCAAGGGACCCAAAACCA TGGACGAGTTGCTGGTCGACCTACGATCGGATCATGAGCTCAAAGGCCTG GGAGATGCAATGTATTATTTAGGATGCCACAAAACCCGTGATAGACAAAA GAGGAAGCTCAGGATCGACCAGCACCTCTACGCGAGGTCCAAAGCCGAGC GTTTTGGGATATCCAATACCAGCGTGCTTCCGGCCACGGCGAACACCATG AAAAAATACTACAGACCGAAGACCTCAGAGGAAGCCGAGGAGATGCAGGT GTTCCCAACAGGGAGGCAGTGGGGGCGCTCATATGGACGGCGACAATGAC GCGACCCGACATCGCACACGCCGTACACACTACGGCAAAGTTCTGTGAGA ACACAGCGATGGCGCACAAGAGAGCTGTGAAGATTCTGTCGTACATACTA AGGATCGAAGACCTGGGACTCACCTACGGCGGACAGGGCTGCCGGGTCGA AGTTTTGGCTTACGTTGATTCAGACTACGCGACGTGCCAGGACAGCCAAC GCTCATTCTCTGGTAGAGTGGTACTGCTGGGGGGGGCGCGAGCAGTTGGC ACTCGAGGACTCAGGAGATGACGGCGGTGGGGACAATAGAAGCGGAGTAC GTCGCATTGGCGGAGACCGTGAACGAAGTACTGTTTCTGTGCCAAGTGCA AGCGTCCATCATGCCGATGCTAGAACACTACCCCGTAATAGTTGAGGAAG AGAGCCAAGGGGCCGAAAAGATGGCCTACAACAAGCACAACAGTCGGAGG ACGCGTCACATCGACATGAAGCACCACATTGTTCGCAATGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig15007:1140..2481-

>mRNA_H-paniculata_contig15007.2980.1 ID=mRNA_H-paniculata_contig15007.2980.1|Name=mRNA_H-paniculata_contig15007.2980.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1284bp|location=Sequence derived from alignment at H-paniculata_contig15007:1140..2481- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACATTGTCGCTTGCGGCAATCCAGGACTGGGAACTTCGGCACGTCGA
CTTTGAACGAGCGTATCTTCAGGCGCCCGTCGACGAGGAGATTCTCGTCA
AAATTCCGGTAGAATACTGGGAGTTCCCAGGAGCGGTGGGGTGCCTCGAC
AAGGCAATTTGCAGATTGGTGCAAGCCGGCAGATGCTGGAGTATGAAGGT
TACCGCGGATATCACGGCGAAAGAGTTTGAGCAATCGTACACCGATCCGT
GTGTGTTCCTCAAGATCCTAGACAGGGAGGTGGTCGCAGTCATCATCATA
TTCGTGGACGACCTGTTGATGAGCACCAAGGGACCCAAAACCATGGACGA
GTTGCTGGTCGACCTACGATCGGATCATGAGCTCAAAGGCCTGGGAGATG
CAATGTATTATTTAGGATGCCACAAAACCCGTGATAGACAAAAGAGGAAG
CTCAGGATCGACCAGCACCTCTACGCGAGGTCCAAAGCCGAGCGTTTTGG
GATATCCAATACCAGCGTGCTTCCGGCCACGGCGAACACCATGAAAAAAT
ACTACAGACCGAAGACCTCAGAGGAAGCCGAGGAGATGCAGGTGTTCCCA
ACAGGGAGGCAGTGGGGGCGCTCATATGGACGGCGACAATGAATGACATT
GTCGCTTGCGGCAATCCAGGACTGGGAACTTCGGCACGTCGACTTTGAAC
GAGCGTATCTTCAGGCGCCCGTCGACGAGGAGATTCTCGTCAAAATTCCG
GTAGAATACTGGGAGTTCCCAGGAGCGGTGGGGTGCCTCGACAAGGCAAT
TTGCAGATTGGTGCAAGCCGGCAGATGCTGGAGTATGAAGGTTACCGCGG
ATATCACGGCGAAAGAGTTTGAGCAATCGTACACCGATCCGTGTGTGTTC
CTCAAGATCCTAGACAGGGAGGTGGTCGCAGTCATCATCATATTCGTGGA
CGACCTGTTGATGAGCACCAAGGGACCCAAAACCATGGACGAGTTGCTGG
TCGACCTACGATCGGATCATGAGCTCAAAGGCCTGGGAGATGCAATGTAT
TATTTAGGATGCCACAAAACCCGTGATAGACAAAAGAGGAAGCTCAGGAT
CGACCAGCACCTCTACGCGAGGTCCAAAGCCGAGCGTTTTGGGATATCCA
ATACCAGCGTGCTTCCGGCCACGGCGAACACCATGAAAAAATACTACAGA
CCGAAGACCTCAGAGGAAGCCGAGGAGATGCAGGTGTTCCCAACAGGGAG
GCAGTGGGGGCGCTCATATGGACGGCGACAATGA
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