mRNA_H-paniculata_contig1500.2979.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1500.2979.1
Unique NamemRNA_H-paniculata_contig1500.2979.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1500.2979.1 vs. uniprot
Match: D7FNA6_ECTSI (Similar to titin isoform N2-B n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNA6_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 1.440e-26
Identity = 55/72 (76.39%), Postives = 61/72 (84.72%), Query Frame = 1 
Query:    1 DATDVPDPYTSEGLNISYVGCVKFDSDAGESVKLATVDQGSMAGGIASVTQLPLGDVDDSSLEGTFLGGGGT 216
            DAT+VPDPYTS GLN++Y GCV FD+ AGESV LATV QG+ AGGI+S  QLPLGDVDD SLEGTFLGG GT
Sbjct: 15134 DATNVPDPYTSGGLNVTYEGCVPFDAIAGESVTLATVAQGTTAGGISSAVQLPLGDVDDPSLEGTFLGGDGT 15205
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BLAST of mRNA_H-paniculata_contig1500.2979.1 vs. uniprot
Match: A0A6H5JYH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYH1_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.270e-25
Identity = 53/72 (73.61%), Postives = 60/72 (83.33%), Query Frame = 1 
Query:    1 DATDVPDPYTSEGLNISYVGCVKFDSDAGESVKLATVDQGSMAGGIASVTQLPLGDVDDSSLEGTFLGGGGT 216
            DAT+VPDPYTS GLN++Y GCV FD+ AGESV L TV QG+ AGGI+S  QLPLGDVDD+SLEG FLGG GT
Sbjct: 7726 DATNVPDPYTSGGLNVTYEGCVPFDAVAGESVTLTTVTQGTTAGGISSAVQLPLGDVDDASLEGRFLGGDGT 7797
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1500.2979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNA6_ECTSI1.440e-2676.39Similar to titin isoform N2-B n=1 Tax=Ectocarpus s... [more]
A0A6H5JYH1_9PHAE1.270e-2573.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1500contigH-paniculata_contig1500:25687..26116 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue3.2e-22
Seed eggNOG ortholog2880.D7FNA6
KEGG koko:K12567
KEGG Pathwayko05410,ko05414,map05410,map05414
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cytoskeletal protein binding
EggNOG OGsKOG0613@1,KOG0613@2759
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko04131,ko04147,ko04812
Exons2
Model size219
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929203.7480874-CDS-H-paniculata_contig1500:25687..257091622929203.7480874-CDS-H-paniculata_contig1500:25687..25709Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1500 25688..25709 -
1691480768.7932065-CDS-H-paniculata_contig1500:25687..257091691480768.7932065-CDS-H-paniculata_contig1500:25687..25709Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1500 25688..25709 -
1622929203.7652004-CDS-H-paniculata_contig1500:25922..261161622929203.7652004-CDS-H-paniculata_contig1500:25922..26116Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1500 25923..26116 -
1691480768.8029413-CDS-H-paniculata_contig1500:25922..261161691480768.8029413-CDS-H-paniculata_contig1500:25922..26116Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1500 25923..26116 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1500.2979.1prot_H-paniculata_contig1500.2979.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1500 25688..26116 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1500.2979.1

>prot_H-paniculata_contig1500.2979.1 ID=prot_H-paniculata_contig1500.2979.1|Name=mRNA_H-paniculata_contig1500.2979.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
DATDVPDPYTSEGLNISYVGCVKFDSDAGESVKLATVDQGSMAGGIASVT
QLPLGDVDDSSLEGTFLGGGGT
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mRNA from alignment at H-paniculata_contig1500:25687..26116-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1500.2979.1 ID=mRNA_H-paniculata_contig1500.2979.1|Name=mRNA_H-paniculata_contig1500.2979.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=430bp|location=Sequence derived from alignment at H-paniculata_contig1500:25687..26116- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGCGACCGACGTTCCGGATCCGTATACGTCTGAAGGGCTGAACATCAG
CTACGTTGGTTGTGTGAAGTTCGACTCAGACGCGGGTGAAAGCGTTAAAC
TAGCCACGGTTGATCAGGGGAGCATGGCGGGCGGAATTGCTTCGGTGACC
CAGCTTCCCCTGGGCGATGTCGATGATTCTTCGCTGGAGGGGACGTGAGT
ATTGCACCTTTCTCAGAGCTTGAGGATTTTTTTCCGGATGTCGCACCGAT
TTTCTGACTCAGCGTTACGCCAAGAGTGCAGAGGTTTGCTAGACTTTGCG
ATGAGCCACACACTCAATATTCACCAACGCGGTATATTTGTGCTGGGAGC
ATATTTCTTTGAGCTTCACGAACTCCGAACGTGTCCAATAAAAAATGTAT
GTGTCAGGTTCCTTGGCGGTGGTGGAACAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1500:25687..26116-

>mRNA_H-paniculata_contig1500.2979.1 ID=mRNA_H-paniculata_contig1500.2979.1|Name=mRNA_H-paniculata_contig1500.2979.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig1500:25687..26116- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGCGACCGACGTTCCGGATCCGTATACGTCTGAAGGGCTGAACATCAG
CTACGTTGGTTGTGTGAAGTTCGACTCAGACGCGGGTGAAAGCGTTAAAC
TAGCCACGGTTGATCAGGGGAGCATGGCGGGCGGAATTGCTTCGGTGACC
CAGCTTCCCCTGGGCGATGTCGATGATTCTTCGCTGGAGGGGACGACGCG
ACCGACGTTCCGGATCCGTATACGTCTGAAGGGCTGAACATCAGCTACGT
TGGTTGTGTGAAGTTCGACTCAGACGCGGGTGAAAGCGTTAAACTAGCCA
CGGTTGATCAGGGGAGCATGGCGGGCGGAATTGCTTCGGTGACCCAGCTT
CCCCTGGGCGATGTCGATGATTCTTCGCTGGAGGGGACGTTCCTTGGCGG
TGGTGGAACAGTTCCTTGGCGGTGGTGGAACA
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