mRNA_H-paniculata_contig15.2976.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15.2976.1
Unique NamemRNA_H-paniculata_contig15.2976.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig15.2976.1 vs. uniprot
Match: D8LH80_ECTSI (Acetyl-CoA acetyltransferase, putative mitochondrial presursor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH80_ECTSI)

HSP 1 Score: 602 bits (1552), Expect = 2.720e-213
Identity = 307/382 (80.37%), Postives = 344/382 (90.05%), Query Frame = 1
Query:  115 MTATGVFIVGAKRTAFGAFGGSLAKLSATELAVASSKAAVTQAGVDPSQVDATFVGNVIQSSPDACYLARHVALKVGAPVSSPALTVNRLCGSGFETVIQGAEAIQLGKAAITLCAGSENMSAAPLVVSGNDARWGVALGSGLKMEDSLWAGLTDLHIGLPMGMTAENIAEKYGITRQQCDEYAVRSQRLWGVGHGNGAFTEEMAAIEVKTKKGSKVMDTDEHPRPDTSEEKIGSLRPVFMKDGVVTAANASGICDGAGSLVVAGESALSSNNITPLGRLVAWHEVGCDPAIMGIGPADAIRGALVKAGLTLADMDIVEVNEAFAAQYLAVEKELGLDPSKTNQNGGAIALGHPLGASGSRIMAHLTHELRRTGKKYGVGAA 1260
            M A+GVFIVGAKRTAFG+FGGSL++LSAT+LAVASSKAA+  AG+ P  +DATFVGNVIQ+SPDACYL+RHVALKVGA V +PALTVNRLCGSGFETV+QGAEAIQLGKA++ LCAG+ENMS+APLVV+GNDARWGVALGSGLKMEDSLWAGLTD + GLPMGMTAEN+ +KYGITR+QC+EY+V SQ  W  G+ NGAFTEEMA IEVKTKKG KVMDTDEHPRP +S EK+ +LRPVF KDGVVT+A ASGICDGAGSL++AGESA++   +TPL R+VA HEVGCDPAIMGIGP +AIRGAL KAGLTLADMD+VEVNEAFA QYLAVEKELGL+  KTN NGGAIALGHPLGASGSRIMAHLTHELRR G KYGVGAA
Sbjct:    1 MAASGVFIVGAKRTAFGSFGGSLSRLSATDLAVASSKAALVSAGIGPDLIDATFVGNVIQTSPDACYLSRHVALKVGARVETPALTVNRLCGSGFETVVQGAEAIQLGKASVALCAGAENMSSAPLVVAGNDARWGVALGSGLKMEDSLWAGLTDSYAGLPMGMTAENLGDKYGITREQCEEYSVLSQTRWSSGNANGAFTEEMAPIEVKTKKGPKVMDTDEHPRP-SSVEKMAALRPVFKKDGVVTSATASGICDGAGSLLLAGESAVNQKQLTPLARVVATHEVGCDPAIMGIGPVNAIRGALQKAGLTLADMDLVEVNEAFAVQYLAVEKELGLERGKTNTNGGAIALGHPLGASGSRIMAHLTHELRRKGLKYGVGAA 381          
BLAST of mRNA_H-paniculata_contig15.2976.1 vs. uniprot
Match: A0A835ZH16_9STRA (Acetyl-CoA acetyltransferase, putative mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH16_9STRA)

HSP 1 Score: 529 bits (1362), Expect = 2.460e-184
Identity = 267/382 (69.90%), Postives = 312/382 (81.68%), Query Frame = 1
Query:  115 MTATGVFIVGAKRTAFGAFGGSLAKLSATELAVASSKAAVTQAGVDPSQVDATFVGNVIQSSPDACYLARHVALKVGAPVSSPALTVNRLCGSGFETVIQGAEAIQLGKAAITLCAGSENMSAAPLVVSGNDARWGVALGSGLKMEDSLWAGLTDLHIGLPMGMTAENIAEKYGITRQQCDEYAVRSQRLWGVGHGNGAFTEEMAAIEVKTKKGSKVMDTDEHPRPDTSEEKIGSLRPVFMKDGVVTAANASGICDGAGSLVVAGESALSSNNITPLGRLVAWHEVGCDPAIMGIGPADAIRGALVKAGLTLADMDIVEVNEAFAAQYLAVEKELGLDPSKTNQNGGAIALGHPLGASGSRIMAHLTHELRRTGKKYGVGAA 1260
            + A  VFIVGAKRT FGAFGG+L+ LSAT+L V SSKAA+  AGV    +DATF GNVIQSS DACYLARH+ L+VGAPV+SPALTVNRLCGSGFETV+QGAEAIQ+G A + LC G+ENMS APL + G  ARWGV LG+GLK+EDSLWAGLTD H GLPMG+TAEN+A++YGI+R  CDEYA+RSQ LW  GH +GAF  EMA + V+ KKG++ +DTDEHPRP+TS++K+  LRPVF KDGVVTA N+SGICDGAGSL+VA E A+    + PL R+V+W  VGCDP IMGIGPA A+R AL  AGLTL DMD++EVNEAFAAQYLAVEKELGLD    +  GGAIALGHPLGASGSRI+AHLTH+LRR   +YGVG A
Sbjct:    4 VAARKVFIVGAKRTPFGAFGGALSALSATDLGVISSKAAIESAGVSADAIDATFFGNVIQSSADACYLARHIGLRVGAPVASPALTVNRLCGSGFETVVQGAEAIQVGSARVALCGGAENMSNAPLSIGGVSARWGVPLGAGLKLEDSLWAGLTDSHAGLPMGLTAENLAKQYGISRDACDEYALRSQLLWAAGHASGAFEAEMAPVTVEGKKGARTIDTDEHPRPETSKDKLEKLRPVFKKDGVVTAGNSSGICDGAGSLLVASEDAVKDLKLEPLARVVSWGIVGCDPKIMGIGPAGAVRKALEAAGLTLKDMDLIEVNEAFAAQYLAVEKELGLDRDIVSTCGGAIALGHPLGASGSRILAHLTHKLRREKLRYGVGTA 385          
BLAST of mRNA_H-paniculata_contig15.2976.1 vs. uniprot
Match: A0A7S2Q0S1_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q0S1_9STRA)

HSP 1 Score: 502 bits (1293), Expect = 5.750e-174
Identity = 250/379 (65.96%), Postives = 305/379 (80.47%), Query Frame = 1
Query:  124 TGVFIVGAKRTAFGAFGGSLAKLSATELAVASSKAAVTQAGVDPSQVDATFVGNVIQSSPDACYLARHVALKVGAPVSSPALTVNRLCGSGFETVIQGAEAIQLGKAAITLCAGSENMSAAPLVVSGNDARWGVALGSGLKMEDSLWAGLTDLHIGLPMGMTAENIAEKYGITRQQCDEYAVRSQRLWGVGHGNGAFTEEMAAIEVKTKKGSKVMDTDEHPRPDTSEEKIGSLRPVFMKDGVVTAANASGICDGAGSLVVAGESALSSNNITPLGRLVAWHEVGCDPAIMGIGPADAIRGALVKAGLTLADMDIVEVNEAFAAQYLAVEKELGLDPSKTNQNGGAIALGHPLGASGSRIMAHLTHELRRTGKKYGVGAA 1260
            T +FIV AKRT FGAFGGSL KLSATEL   +++AA+  A +DP+ +DA + GNVIQSS D+ YLARHV LK G P+S+PALT+NRLCGSGFETVIQGA++I+L +A+I +C GSENMS APL V GNDARWGV+LGSGLKM DSLW GLTD + G PMG+TAEN+AEKY I+RQ CDE+A+RSQ+ WG    NG F  E+  IEV+TKKG+K++D DEHPRPDTS EKI SLRPVF KDGVVTAANASGICDGAG++++A E A+  +N+ PL RL ++H  GCDP+IMGIGP  AI+GAL   GLT+AD+D +E+NEAFAAQ+LA  KEL LD +KTN NGGAI++GHPLG+SGSRI AHL +E +R      VG+A
Sbjct:    2 TNIFIVAAKRTPFGAFGGSLKKLSATELGYHATQAAINSANIDPNTIDAVYFGNVIQSSSDSAYLARHVGLKCGVPISAPALTINRLCGSGFETVIQGAKSIKLNEASIVVCGGSENMSMAPLQVDGNDARWGVSLGSGLKMRDSLWDGLTDQYAGTPMGITAENLAEKYNISRQDCDEFAIRSQQTWGNAQKNGVFDLEIGPIEVQTKKGTKIVDADEHPRPDTSLEKISSLRPVFKKDGVVTAANASGICDGAGAIILASEEAVKEHNLKPLARLASYHVAGCDPSIMGIGPVPAIKGALGSVGLTVADVDRMEINEAFAAQFLACAKELELDMTKTNLNGGAISIGHPLGSSGSRITAHLANEFQRNEGNIYVGSA 380          
BLAST of mRNA_H-paniculata_contig15.2976.1 vs. uniprot
Match: B8C459_THAPS (3-ketoacyl-coa thiolase, mitochondrial n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C459_THAPS)

HSP 1 Score: 499 bits (1285), Expect = 9.760e-173
Identity = 253/380 (66.58%), Postives = 303/380 (79.74%), Query Frame = 1
Query:  124 TGVFIVGAKRTAFGAFGGSLAKLSATELAVASSKAAVTQAGVDPSQVDATFVGNVIQSSPDACYLARHVALKVGAPVSSPALTVNRLCGSGFETVIQGAEAIQLGKAAITLCAGSENMSAAPLVVSGNDARWGVALGSGLKMEDSLWAGLTDLHIGLPMGMTAENIAEKYGITRQQCDEYAVRSQRLWGVGHGNGAFTEEMAAIEVKTKKGSKVMDTDEHPRPDTSEEKIGSLRPVFMKDGVVTAANASGICDGAGSLVVAGESALSSNNITPLGRLVAWHEVGCDPAIMGIGPADAIRGALVKAGLTLADMDIVEVNEAFAAQYLAVEKELGLDPSKTNQNGGAIALGHPLGASGSRIMAHLTHELRRTGK-KYGVGAA 1260
            + +FIV AKRT FGAFGGSL  LSATEL   S+KAA++ A +DPS VDA + GNVIQSSPDA YLARHV LK G P+ +PALT+NRLCGSGFETVIQGA++I+L +A+I +C GSENMS APL V GNDARWGVALG GL M DSLW GLTD ++G PMG+TAEN+AE+YGITRQ CDE+A+RSQ+ W   H NG F  EMA +E++TKKG K++ TDEHPRPDTS E+I SLRPVF KDGVVTAANASGICDGAG++++A E A+  + + PL RL ++H  GCDP+IMGIGP  AI+GAL  AG+TLAD+D +E+NEAFAAQ+LA  K L LD  KTN +GGAI+ GHPLGASGSRI AHL +E  RT   K  VG+A
Sbjct:    2 SSIFIVAAKRTPFGAFGGSLKALSATELGAISTKAALSSANIDPSLVDAVYFGNVIQSSPDAAYLARHVGLKCGVPIPTPALTINRLCGSGFETVIQGAKSIKLNEASIVVCGGSENMSMAPLQVDGNDARWGVALGKGLTMRDSLWDGLTDKYVGTPMGITAENLAEQYGITRQDCDEFAIRSQQTWVKAHKNGVFDLEMANVEIETKKGPKIIGTDEHPRPDTSLEQIASLRPVFKKDGVVTAANASGICDGAGTIILASEEAVREHGLQPLARLASYHVSGCDPSIMGIGPVSAIKGALESAGMTLADVDRMEINEAFAAQFLACAKALELDMDKTNLHGGAISFGHPLGASGSRITAHLANEFLRTDAGKVHVGSA 381          
BLAST of mRNA_H-paniculata_contig15.2976.1 vs. uniprot
Match: A0A7S3HEX1_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HEX1_9STRA)

HSP 1 Score: 483 bits (1242), Expect = 3.900e-166
Identity = 247/377 (65.52%), Postives = 296/377 (78.51%), Query Frame = 1
Query:  130 VFIVGAKRTAFGAFGGSLAKLSATELAVASSKAAVTQAGVDPSQVDATFVGNVIQSSPDACYLARHVALKVGAPVSSPALTVNRLCGSGFETVIQGAEAIQLGKAAITLCAGSENMSAAPLVVSGNDARWGVALGSGLKMEDSLWAGLTDLHIGLPMGMTAENIAEKYGITRQQCDEYAVRSQRLWGVGHGNGAFTEEMAAIEVKTKKGSKVMDTDEHPRPDTSEEKIGSLRPVFMKDGVVTAANASGICDGAGSLVVAGESALSSNNITPLGRLVAWHEVGCDPAIMGIGPADAIRGALVKAGLTLADMDIVEVNEAFAAQYLAVEKELGLDPSKTNQNGGAIALGHPLGASGSRIMAHLTHELRRTGKKYGVGAA 1260
            VFIVGAKRT FG+FGGSL  LSAT+LAV SSKAA+  A + P ++D T  GNVI SS D+ YL+RHV LK G PV  PALT+NRLCGSGFETV  GAEAIQLG + ITLC G+ENMS AP+V+ G  AR+G ALG GLK ED+LWAGLTD +  LPMG+TAEN+A K+ ITR++CD Y +RSQ L+      G FT+E+A +EVK KKG   +  DEHPRP++  E +  L+ VF ++G VTAA+ASGICDGA SLVVA E A+ +NN+TPL R+VAW  VGCDP+IMGIGP +AIRGAL  + LTL DMD+VE+NEAFAAQYLA EK+LGLDP+K N NGGAIALGHPLGASG+RI+ HL+H+L RTGK Y VGAA
Sbjct:    8 VFIVGAKRTPFGSFGGSLKHLSATDLAVHSSKAAIAHAKISPEKIDETIFGNVIGSSLDSTYLSRHVGLKTGVPVHKPALTINRLCGSGFETVCIGAEAIQLGNSNITLCGGTENMSQAPMVIDGLSARFGTALGKGLKAEDALWAGLTDSYAKLPMGLTAENLAVKFNITREECDAYGLRSQLLYAKALAAGVFTDEIAPVEVKGKKGPVTISADEHPRPNSKIEDLQKLKAVFKENGAVTAASASGICDGAASLVVASEEAVKANNLTPLTRVVAWCRVGCDPSIMGIGPVEAIRGALKASNLTLQDMDLVEINEAFAAQYLACEKDLGLDPTKCNVNGGAIALGHPLGASGARILTHLSHQLVRTGKTYAVGAA 384          
BLAST of mRNA_H-paniculata_contig15.2976.1 vs. uniprot
Match: A0A7S2V0D7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0D7_9STRA)

HSP 1 Score: 482 bits (1241), Expect = 4.980e-166
Identity = 249/382 (65.18%), Postives = 295/382 (77.23%), Query Frame = 1
Query:  118 TATGVFIVGAKRTAFGAFGGSLAKLSATELAVASSKAAVTQAGVDPSQVDATFVGNVIQSSPDACYLARHVALKVGAPVSSPALTVNRLCGSGFETVIQGAEAIQLGKAAITLCAGSENMSAAPLVVSGNDARWGVALGSGLKMEDSLWAGLTDLHIGLPMGMTAENIAEKYGITRQQCDEYAVRSQRLWGVGHGNGAFTEEMAAIEVKTKKGSKVMDTDEHPRPDTSEEKIGSLRPVFMKDGV-VTAANASGICDGAGSLVVAGESALSSNNITPLGRLVAWHEVGCDPAIMGIGPADAIRGALVKAGLTLADMDIVEVNEAFAAQYLAVEKELGLDPSKTNQNGGAIALGHPLGASGSRIMAHLTHELRRTGKKYGVGAA 1260
            T+ G+F+V AKRT FGAFGGSL  LSATEL V SSKAA+  A ++PS VD T VGNVIQSS DA YL+RHV LK G  +  PALT+NRLCGSGFE+VIQG E I LG+A + LC G+ENMSA P+V+ G  ARWGV LG G+K+EDSLW GLTD H G PMG+TAEN+A+KYGITR++CDEYAVRSQ  W V +    F  E+A IE+KT+KG + +DTDEHPR + S EK+G+L PVF KDG  VTAANASGICDGAG++V+A E A+   N+TPL RL  W   GC P IMGIGPA AI  AL  AG++L  +D VE+NEAFAAQYLA EK+LGLD  KTN NGGAIALGHPL ASGSR+ AHLTH+L+R G K+ VG+A
Sbjct:    3 TSKGIFVVAAKRTPFGAFGGSLKGLSATELCVHSSKAALLAANLNPSAVDVTVVGNVIQSSLDAAYLSRHVGLKCGVDIEKPALTINRLCGSGFESVIQGGEQILLGQADVALCGGTENMSACPMVLDGITARWGVGLGLGMKLEDSLWGGLTDTHAGTPMGITAENLADKYGITREECDEYAVRSQHAWAVANKEKRFDAELAPIEIKTRKGPQAVDTDEHPR-EVSLEKMGNLPPVFRKDGGRVTAANASGICDGAGTIVLASEDAVKEYNLTPLARLAGWSRTGCPPEIMGIGPASAIPKALESAGVSLNQVDRVEINEAFAAQYLACEKDLGLDREKTNVNGGAIALGHPLAASGSRLTAHLTHDLKRVGGKWAVGSA 383          
BLAST of mRNA_H-paniculata_contig15.2976.1 vs. uniprot
Match: A0A7S4I2J6_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I2J6_9STRA)

HSP 1 Score: 477 bits (1228), Expect = 4.510e-164
Identity = 239/381 (62.73%), Postives = 302/381 (79.27%), Query Frame = 1
Query:  121 ATGVFIVGAKRTAFGAFGGSLAKLSATELAVASSKAAVTQAGVDPSQVDATFVGNVIQSSPDACYLARHVALKVGAPVSSPALTVNRLCGSGFETVIQGAEAIQLGKAAITLCAGSENMSAAPLVVSGNDARWGVALGSGLKMEDSLWAGLTDLHIGLPMGMTAENIAEKYGITRQQCDEYAVRSQRLWGVGHGNGAFTEEMAAIEVKTKKG-SKVMDTDEHPRPDTSEEKIGSLRPVFMKDGVVTAANASGICDGAGSLVVAGESALSSNNITPLGRLVAWHEVGCDPAIMGIGPADAIRGALVKAGLTLADMDIVEVNEAFAAQYLAVEKELGLDPSKTNQNGGAIALGHPLGASGSRIMAHLTHELRRTGKKYGVGAA 1260
            +T +F+V AKRT FGAFGG L  L++T+L V ++++A+++ G+DPS VD+ F GN IQSSPDA YLARHVAL+ GAPVS+PALT+NRLCGSGFET+ Q A  ++LG++ I +  GSENMSAAPL   GND RWGV LG GL+M D+LW GLTD + G PMG+TAEN+ EKY I+RQ+CDE+A+RSQ+ WG     G F  EMA +EVK +KG ++V+DTDEHPRPD++ EK+  L+PVF KDG+VTAANASGICDGAGS+V+A E A++ + +TPL R+ +++  GCDP IMGIGPA AIRGAL +AGLTL D+D +E+NEAFAAQ LA  KEL LD  KTN +GGAIALGHPL ASGSRI+AHL +E +RT  K  VG+A
Sbjct:    2 STNIFVVAAKRTPFGAFGGELKSLTSTDLGVIATQSALSEGGIDPSLVDSVFFGNCIQSSPDAAYLARHVALRSGAPVSTPALTINRLCGSGFETIAQAANLMKLGESKIAVAGGSENMSAAPLQADGNDVRWGVGLGKGLQMRDALWDGLTDTYAGTPMGVTAENLGEKYNISRQECDEFAIRSQQTWGKAKEAGVFDLEMAPVEVKGRKGKTEVVDTDEHPRPDSTLEKLSKLKPVFKKDGLVTAANASGICDGAGSVVLATEEAVAEHGLTPLARVASYYVTGCDPTIMGIGPAPAIRGALDRAGLTLRDVDRIEINEAFAAQALACAKELDLDMEKTNVHGGAIALGHPLAASGSRIVAHLANEFQRTDGKIHVGSA 382          
BLAST of mRNA_H-paniculata_contig15.2976.1 vs. uniprot
Match: A0A7S3PU18_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PU18_9STRA)

HSP 1 Score: 471 bits (1213), Expect = 5.380e-162
Identity = 241/377 (63.93%), Postives = 296/377 (78.51%), Query Frame = 1
Query:  130 VFIVGAKRTAFGAFGGSLAKLSATELAVASSKAAVTQAGVDPSQVDATFVGNVIQSSPDACYLARHVALKVGAPVSSPALTVNRLCGSGFETVIQGAEAIQLGKAAITLCAGSENMSAAPLVVSGNDARWGVALGSGLKMEDSLWAGLTDLHIGLPMGMTAENIAEKYGITRQQCDEYAVRSQRLWGVGHGNGAFTEEMAAIEVKTKKGSKVMDTDEHPRPDTSEEKIGSLRPVFMKDGVVTAANASGICDGAGSLVVAGESALSSNNITPLGRLVAWHEVGCDPAIMGIGPADAIRGALVKAGLTLADMDIVEVNEAFAAQYLAVEKELGLDPSKTNQNGGAIALGHPLGASGSRIMAHLTHELRRTGKKYGVGAA 1260
            VFIV AKRT FG+FGGSL  L+AT+LA  ++KAA+T   VDPS VD+ FVGNVIQSSPDA YL+RHV L+ G P S+ ALT+NRLCGSGFET+IQGA +I +G + I +CAGSENMSAAP  + GN +RWGVALGS LKM DSLW GLTD   G PMG+TAEN+AEKY I+RQ+CDE+AVRSQ+ W   + NG F  E+A +E++ K+G+K++DTDEHPR DT+ EK+  LRPVF KDG VTAA+ASGICDGAGS++VA E A+  + + P+ RLV++   GC P IMGIGP  AIRGAL KAGLT+ D+D  E+NEAFAAQ+LA  KEL LD  KTN +GGAI++GHPLGASGSRI+AHL +E + +  K  VGAA
Sbjct:    4 VFIVAAKRTPFGSFGGSLKSLTATDLATVATKAALTAGNVDPSLVDSIFVGNVIQSSPDAAYLSRHVGLRSGVPQSATALTINRLCGSGFETIIQGATSIAVGDSKINICAGSENMSAAPFQLDGNASRWGVALGSNLKMRDSLWDGLTDSFTGTPMGITAENLAEKYSISRQECDEFAVRSQQTWIEANKNGIFDYEIAPVEIENKRGNKIIDTDEHPR-DTTVEKLSKLRPVFKKDGTVTAASASGICDGAGSIIVASEEAVKEHGLKPIARLVSYQVSGCAPEIMGIGPVPAIRGALEKAGLTIGDVDRFEINEAFAAQFLACAKELELDMDKTNIHGGAISIGHPLGASGSRIIAHLANEFKHSDGKIHVGAA 379          
BLAST of mRNA_H-paniculata_contig15.2976.1 vs. uniprot
Match: W7TTB1_9STRA (3-ketoacyl-mitochondrial n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTB1_9STRA)

HSP 1 Score: 467 bits (1201), Expect = 7.680e-160
Identity = 242/381 (63.52%), Postives = 291/381 (76.38%), Query Frame = 1
Query:  127 GVFIVGAKRTAFGAFGGSLAKLSATELAVASSKAAVTQAGVDPSQVDATFVGNVIQSSPDACYLARHVALKVGAPVSSPALTVNRLCGSGFETVIQGAEAIQLGKAAITLCAGSENMSAAPLVVSGNDARWGVALGSGLKMEDSLWAGLTDLHIGLPMGMTAENIAEKYGITRQQCDEYAVRSQRLWGVGHGNGAFTEEMAAIEVKTKKGSKVMDTDEHPRPDTSEEKIGSLRPVFMKDGVVTAANASGICDGAGSLVVAGESALSSNNITPLGRLVAWHEVGCDPAIMGIGPADAIRGALVKAGLTLADMDIVEVNEAFAAQYLAVEKELGLDPSKTNQNGGAIALGHPLGASGSRIMAHLTHELR--RTGKK-YGVGAA 1260
            G+FIVGAKRT FGAFGG L   SATELA  +SKAA+ QA +DPS V+  + GNVIQSS DACYLARH+ LK G P   PALT+NRLCGSGFETVI G EA++LG+A++ L AG+ENMSAAP VV GN  RWGV LG G +M+DSLWAGLTD   G PMG+TAEN+  KYGITRQ+CDE+ +RSQ LW      GA   E+  +EVKTKKG  ++  DEHPRP     K+  L PVF KDG+VTAANASGI DGAG+LV+A E  + ++ + PL R+VAW  VGCDP+IMGIGP +AIRGAL  +G+ LAD+D +E+NEAFAAQ+LA  KELGLD SKTN +GGAIALGHPL ASGSRI+AHL + L+  + GKK Y +G+A
Sbjct:   11 GLFIVGAKRTPFGAFGGKLKNFSATELAYLASKAALCQAKLDPSAVNVVYAGNVIQSSNDACYLARHMGLKAGVPQHVPALTINRLCGSGFETVIMGCEAMELGQASVALAAGTENMSAAPFVVDGNSVRWGVPLGKGPEMKDSLWAGLTDSLAGTPMGITAENLGAKYGITRQECDEFGLRSQHLWAKAQERGALQAEIVPVEVKTKKGIDLVTVDEHPRPQVELAKMSKLNPVFKKDGLVTAANASGIADGAGALVLATEDTVHAHKLEPLARVVAWSRVGCDPSIMGIGPVEAIRGALSVSGVALADLDRIEINEAFAAQFLACAKELGLDMSKTNVHGGAIALGHPLAASGSRIVAHLANGLKGQQGGKKGYVMGSA 391          
BLAST of mRNA_H-paniculata_contig15.2976.1 vs. uniprot
Match: K0RC28_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RC28_THAOC)

HSP 1 Score: 471 bits (1212), Expect = 7.800e-160
Identity = 240/409 (58.68%), Postives = 304/409 (74.33%), Query Frame = 1
Query:  124 TGVFIVGAKRTAFGAFGGSLAKLSATELAVASSKAAVTQAGVDPSQVDATFVGNVIQSSPDACYLARHVALKVGAPVSSPALTVNRLCGSGFETVIQGAEAIQLGKAAITLCAGSENMSAAPLVVSGNDARWGVALGSGLKMEDSLWAGLTDLHIGLPMGMTAENIAEKYGITRQQCDEYAVRSQRLWGVGHGNGAFTEEMAAIEVKTKKGSKVMDTDEHPRPDTSEEKIGSLRPVFMKDGVVTAANASGICDGAG------------------------------SLVVAGESALSSNNITPLGRLVAWHEVGCDPAIMGIGPADAIRGALVKAGLTLADMDIVEVNEAFAAQYLAVEKELGLDPSKTNQNGGAIALGHPLGASGSRIMAHLTHELRRTGKKYGVGAA 1260
            + VFIVGAKRT FGAFGGSL KL++T+L V S+KAA++ A +DPS +DA + GNVIQSS DA YLARHV L+ G P+++P+LT+NRLCGSGFETVIQGA++I L ++ + +C G+ENMS +PL V GND RWGV LG GL M DSLW GLTD + G PMG+TAEN+AEKYGITR++CD+ A+RSQ+ WG  H +G F  E+A +E++TKKG++V+  DEHPRP+TS EKI SLRPVF KDGVVTAANASGICDGAG                              ++++A E A+  +++ PL RL ++   GC+P+IMGIGP  AIRGAL  AGLTL  +D VE+NEAFAAQ+LA  KELGLD  +TN +GGAI+LGHPLGASGSRI+AHL +E +R+     VG+A
Sbjct:   96 SNVFIVGAKRTPFGAFGGSLKKLTSTDLGVVSTKAAISAANLDPSSIDAVYFGNVIQSSSDAAYLARHVGLRCGVPIAAPSLTINRLCGSGFETVIQGAKSILLKESKVAVCGGAENMSMSPLQVDGNDVRWGVGLGKGLSMRDSLWDGLTDQYAGTPMGITAENLAEKYGITREECDKLAIRSQQTWGEAHKDGVFDLELAPVEIETKKGTQVVSVDEHPRPETSLEKISSLRPVFKKDGVVTAANASGICDGAGECGRSTFASACAGPRAEDAISSTHFARLSGTIILASEDAVKEHDLKPLARLASYQVSGCEPSIMGIGPVPAIRGALASAGLTLDQVDRVEINEAFAAQFLACAKELGLDMDRTNLHGGAISLGHPLGASGSRIVAHLANEFQRSDGDIYVGSA 504          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15.2976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH80_ECTSI2.720e-21380.37Acetyl-CoA acetyltransferase, putative mitochondri... [more]
A0A835ZH16_9STRA2.460e-18469.90Acetyl-CoA acetyltransferase, putative mitochondri... [more]
A0A7S2Q0S1_9STRA5.750e-17465.96Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
B8C459_THAPS9.760e-17366.583-ketoacyl-coa thiolase, mitochondrial n=1 Tax=Tha... [more]
A0A7S3HEX1_9STRA3.900e-16665.52Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2V0D7_9STRA4.980e-16665.18Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4I2J6_9STRA4.510e-16462.73Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S3PU18_9STRA5.380e-16263.93Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]
W7TTB1_9STRA7.680e-16063.523-ketoacyl-mitochondrial n=3 Tax=Monodopsidaceae T... [more]
K0RC28_THAOC7.800e-16058.68Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15contigH-paniculata_contig15:69914..74932 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score608.2
Seed ortholog evalue2.9e-171
Seed eggNOG ortholog2880.D8LH80
KEGG rclassRC00004,RC00326,RC00405,RC01702
KEGG koko:K07508
KEGG ReactionR00391,R00927,R01177,R03778,R03858,R03991,R04546,R04742,R04747
KEGG Pathwayko00062,ko00071,ko00280,ko01100,ko01110,ko01130,ko01212,map00062,map00071,map00280,map01100,map01110,map01130,map01212
KEGG ModuleM00085,M00087
Hectar predicted targeting categoryother localisation
EggNOG free text desc.negative regulation of mitochondrial membrane permeability involved in apoptotic process
EggNOG OGsCOG0183@1,KOG1391@2759
Ec32 ortholog descriptionAcetyl-CoA acetyltransferase, putative mitochondrial presursor
Ec32 orthologEc-24_000870.1
EC2.3.1.16
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons10
Model size1389
Cds size1275
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929202.126417-CDS-H-paniculata_contig15:69913..700431622929202.126417-CDS-H-paniculata_contig15:69913..70043Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15 69914..70043 -
1691480768.139456-CDS-H-paniculata_contig15:69913..700431691480768.139456-CDS-H-paniculata_contig15:69913..70043Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15 69914..70043 -
1622929202.139838-CDS-H-paniculata_contig15:70927..711151622929202.139838-CDS-H-paniculata_contig15:70927..71115Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15 70928..71115 -
1691480768.1510231-CDS-H-paniculata_contig15:70927..711151691480768.1510231-CDS-H-paniculata_contig15:70927..71115Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15 70928..71115 -
1622929202.1530643-CDS-H-paniculata_contig15:71404..715821622929202.1530643-CDS-H-paniculata_contig15:71404..71582Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15 71405..71582 -
1691480768.1595683-CDS-H-paniculata_contig15:71404..715821691480768.1595683-CDS-H-paniculata_contig15:71404..71582Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15 71405..71582 -
1622929202.1643162-CDS-H-paniculata_contig15:71962..720931622929202.1643162-CDS-H-paniculata_contig15:71962..72093Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15 71963..72093 -
1691480768.1699781-CDS-H-paniculata_contig15:71962..720931691480768.1699781-CDS-H-paniculata_contig15:71962..72093Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15 71963..72093 -
1622929202.1766138-CDS-H-paniculata_contig15:72421..725531622929202.1766138-CDS-H-paniculata_contig15:72421..72553Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15 72422..72553 -
1691480768.1777925-CDS-H-paniculata_contig15:72421..725531691480768.1777925-CDS-H-paniculata_contig15:72421..72553Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15 72422..72553 -
1622929202.1919558-CDS-H-paniculata_contig15:73020..731351622929202.1919558-CDS-H-paniculata_contig15:73020..73135Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15 73021..73135 -
1691480768.1853952-CDS-H-paniculata_contig15:73020..731351691480768.1853952-CDS-H-paniculata_contig15:73020..73135Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15 73021..73135 -
1622929202.2048757-CDS-H-paniculata_contig15:73415..735161622929202.2048757-CDS-H-paniculata_contig15:73415..73516Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15 73416..73516 -
1691480768.194536-CDS-H-paniculata_contig15:73415..735161691480768.194536-CDS-H-paniculata_contig15:73415..73516Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15 73416..73516 -
1622929202.219697-CDS-H-paniculata_contig15:73750..738651622929202.219697-CDS-H-paniculata_contig15:73750..73865Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15 73751..73865 -
1691480768.2038603-CDS-H-paniculata_contig15:73750..738651691480768.2038603-CDS-H-paniculata_contig15:73750..73865Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15 73751..73865 -
1622929202.229671-CDS-H-paniculata_contig15:74354..744591622929202.229671-CDS-H-paniculata_contig15:74354..74459Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15 74355..74459 -
1691480768.216815-CDS-H-paniculata_contig15:74354..744591691480768.216815-CDS-H-paniculata_contig15:74354..74459Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15 74355..74459 -
1622929202.2437024-CDS-H-paniculata_contig15:74738..748181622929202.2437024-CDS-H-paniculata_contig15:74738..74818Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15 74739..74818 -
1691480768.2271068-CDS-H-paniculata_contig15:74738..748181691480768.2271068-CDS-H-paniculata_contig15:74738..74818Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15 74739..74818 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929202.2579732-UTR-H-paniculata_contig15:74818..749321622929202.2579732-UTR-H-paniculata_contig15:74818..74932Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15 74819..74932 -
1691480768.2342973-UTR-H-paniculata_contig15:74818..749321691480768.2342973-UTR-H-paniculata_contig15:74818..74932Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15 74819..74932 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15.2976.1prot_H-paniculata_contig15.2976.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15 69914..74818 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15.2976.1

>prot_H-paniculata_contig15.2976.1 ID=prot_H-paniculata_contig15.2976.1|Name=mRNA_H-paniculata_contig15.2976.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=425bp
MTATGVFIVGAKRTAFGAFGGSLAKLSATELAVASSKAAVTQAGVDPSQV
DATFVGNVIQSSPDACYLARHVALKVGAPVSSPALTVNRLCGSGFETVIQ
GAEAIQLGKAAITLCAGSENMSAAPLVVSGNDARWGVALGSGLKMEDSLW
AGLTDLHIGLPMGMTAENIAEKYGITRQQCDEYAVRSQRLWGVGHGNGAF
TEEMAAIEVKTKKGSKVMDTDEHPRPDTSEEKIGSLRPVFMKDGVVTAAN
ASGICDGAGSLVVAGESALSSNNITPLGRLVAWHEVGCDPAIMGIGPADA
IRGALVKAGLTLADMDIVEVNEAFAAQYLAVEKELGLDPSKTNQNGGAIA
LGHPLGASGSRIMAHLTHELRRTGKKYGVGAAWGGSPNPRAASGPPQPHL
SRAPVLKCPHPRFHSARQGSIRQG*
back to top

mRNA from alignment at H-paniculata_contig15:69914..74932-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15.2976.1 ID=mRNA_H-paniculata_contig15.2976.1|Name=mRNA_H-paniculata_contig15.2976.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5019bp|location=Sequence derived from alignment at H-paniculata_contig15:69914..74932- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGCATGTCTTTGGTTCAGAAACAGAATTCTTAAGTACTCACACTCCA CGAACTACCAACGTAAGGACCAGCAATTCGCTGAAGAACCGTCTGCTACG ATCTCATATATATCATGACTGCGACTGGAGTATTTATCGTGGGAGCGAAA CGCACTGCATTTGGAGCCTTCGGAGGTTCCTTGGCTAAACTCAGGTAACG TTTGAAAACGCGGAGGGATTACAGGTAACAATCGATCATGCCATAAATGA GAACTTGTTACGCAACTCGCCATGATAGAGGTACAGTGTGTTCTTCTACT TGGCGGTATGTTGGGTACCGACACCACTCTCTCAATGTAGTCTGTTATAG GTCACCATGACTAGCGCACTGAGCTTGTTGCAACTTTACTGATGGTTGAA GTGCACTGGTTTATGTACTCGCGTTTCGTGTGCCATCCCTTCTATACATT GCTTCACATTGCCTGCCTTGCAGCGCTACGGAGTTGGCTGTTGCCTCGTC AAAAGCTGCGGTGACACAAGCTGGAGTGGATCCTTCTCAAGTCGATGCAA CGTTCGTCGGGAACGTCATTCAATCCAGGTATGTGTGTGCTTCGCCTTGT TTGGTTTTATAGTTTATAGTCAAGTTGAAGTACGCCACAGACGTGTTCGC GGCGTGAATTGTTTTACTTACAGATGGCATTAATTAGTTGTTGGACAGCA GGAAGAGCTACAAGCAACTGAACTGTACTATTACTACTTTGTACTAGTGT TTATATAGGCAACTCATACACGTACAGGTATACAGTAGGCTTCCGATATA TCAGACGTTAACTGCACGGTGTTCGTGATTTATTTCAATATACATAGCGA GACGACACGAGCAAGCCTCCATGGTTTTGTACTGGTGTCAATGGCGTAGT CGTACGGATTACCAGCGCGCTTTTCGCGAGGTGAGATTCGCCATGTTCCT CGTCAATTCTGTGCATGTGTCTGTTTTGTGTTGCAGTTGGCCTGTTTCTA TGCGTTTCCGCCGGCTTAGCTCACAGTTCATCAATCTCATTTATCCCCCT TGAATGCACGCCTTCAGCCCGGATGCATGCTATCTGGCTCGTCATGTGGC GCTGAAGGTGGGGGCTCCAGTCAGCTCACCAGCTTTGACTGTTAACCGCT TATGTGGCAGCGGCTTCGAAACAGTAATTCAGGTACATATATAACAAGAC TGGGAACTCATGGGTTTGCGAATCAAAAATCCCTGTTACCGTCTACTGGT CGACGACCTTGAACAGATATCTACATACAAGAGGGAATTTTTATTCGCGA TCTCCTCTTCGTTTTGGCTTACTGGTTGGGTTGTAGCACGGCGGTGTTTC GTGTTGTCTGGCGCCATGCTTCTGTAACACTGTGTAGTGCTTCCGTGTCA CATGTCGATGTTGCAGGGCGCGGAGGCTATTCAGCTGGGAAAGGCTGCCA TCACTCTCTGCGCAGGTTCAGAAAACATGAGCGCAGCTCCGCTGGTTGTC AGTGGCAACGATGCCAGGTGATGTACTTACACAGTTTCGCCGAGGTTTGT TTGTCATTATTTCCGTGTTAGCACCGTAAATGATACTGCAAGAACGTCAA CGTATTCCAGTATATATATAGTACTGTAGACCATTGTGGCCTTTCCTAGT TATCTGAGCTATGTACTCGTAAGAGAAGGACGAAATCGATAGAGTACCAC GGCGCAGACGTCTGTCAATATATTCTGGTGCAACTGGCGCACCTACCATA CTGTGATTTTTAACCCTTTTCATGCGCACTCGCCACGATTCTCGAAGGTG GGGTGTTGCTTTGGGGAGCGGGCTGAAGATGGAAGACAGCTTGTGGGCTG GCTTGACTGACTTGCACATCGGGCTGCCGATGGGGATGACGGCGGAGAAT ATCGCAGAGAAGGTACAATTGCTTTTACCCCTTACTCATAGAAAGCACGG TGGCTAGCACTTCAATCTGCTGAAATGTGGGGGCATTATAGTATGGACCG TGAGATGTTGAACGTTGGCTGTAAGTTTCAGTTGCAAAGATGAGATGCGC TTTACGTTTGGAAGACAGATCATTCTGCGCTCTCTAGCAGCGCACGCACT CTTCGATATCTAAACTTGCGGGTGGCAGTATTCTAGGCGACACTTACAAA AAATACCGGGCGAGGTATTGGACACGGTACCGTGAGCACGAAAACGTCGA TGTCCTAATATGTGAAATTGACCTATCAGTCTACTACAGGCGCTCTTTGC TTCTCACATTCATCATTCCAACTTGGGTCCATAGCGGTACGGTGCGCACT TGAAGTTCGGTTGCAAGGTGTGAATTTTTCGCGGTATCGTGGTTAACATG TTAACCAATCGTCTCGTTTCAATTCGCAGTATGGAATCACTCGCCAACAA TGTGACGAATATGCTGTGAGATCCCAGAGGCTGTGGGGTGTGGGGCATGG TAATGGTGCATTCACCGAGGAGATGGCGGCAATCGAAGTCAAGACCAAAA AAGGCTCGAAGGTGTGCTTGCTATCGTAGTCAAGGAAGTAACTCAACATA TATTGTTGAGAACGAAAGAGTGCGGCATTCTCCGTTGCGTTTCAAAAGTT GCCGCTTTTAAGCATGCTTACTCGTTCTGGAAGCTCCATTATTGTGGTTT AGAGTTGGAAATATGCTGAAGACCTTGAATGTAGAGATCTACACTACATT CGTGTTCCCAAGCAGTGACTGCAGCATGCAAACCAGAGTTGATTGGATAC AAGTTATTTGCATTGATAACGTTCCACGCGTTTGCACTACCGGATGGAGA ACTTCCTCTTGTACGTTGTCTCACATTTGTGTGTGGTAGGTGATGGACAC AGACGAGCATCCGCGTCCGGACACATCAGAGGAGAAGATTGGTAGCCTTC GCCCCGTATTCATGAAGGACGGTGTGGTGACCGCTGCCAATGCCTCTGGG ATTTGTGATGGAGCAGGCAGGTAAGCACCGTTCTAGTGTTTTCATCTCGC CTCTACAGATCACAACCAAGGCGATCGCGGAAAATTGGTTATATCATTTT CCTACCAATGGGAGGCACAGACGTGTTCCGGCTCGCTGGTCGCTTCAAAC AAAGATACTGCCTATCTGACTTTGTTAAGCGAACAAAGAGCGAACCCAAT CCACCTGAAGTTCCAAAGAGATGTTACGTGCTTACATAATCGTGCTCCCT ATGTTTCCCCCTCATACACCGAGCACCTACCTAAGCGGTTGGTGCGCAAT TCCCAGGCAGGATGGTTGTTTCCTACCTAACCGTTAAGGTTTTGCCAATA ACTCGACTGACTATTTCCTGCTGCTGCCCGTTTGGCATCTCACATGTCAG TCTCGTGGTGGCCGGGGAATCGGCCCTTTCATCGAACAACATCACCCCAT TGGGACGTTTAGTGGCCTGGCATGAGGTCGGTTGCGATCCAGCCATCATG GGCATTGGGCCCGCCGATGCCATCCGTGGTGCTTTAGTCAAGGCGGGACT AACTTTGGCGGACATGGACATTGTCGAGGTTTGACGCATTGTTCAGTGTG GGCATTACAACAGGTCGGATAGGGGGGTCAGGGCTGGCCCGAGGGACATC ATATCCTGTACAAAAGTTGTTCTACGGACATCAAATGTATCGCGTGAAAC ACCTGAGCACGTGTTATGTCTCTCCGCCAAAGCTCCGATCATGGATCATC GTACCAATACTTGGGGTAACATTCTGATTAACTCGAGAGTTTATGTATTC ACACCCGCTTTCTTCACATCATGCCACTCTGATGATAGAAACTTGCCCAC CATCGCATCATTCTCAGGTCAACGAAGCATTCGCGGCGCAATACTTGGCG GTGGAGAAGGAGCTTGGTCTTGACCCGTCCAAGACAAACCAAAATGGGGG CGCCATTGCCTTGGGTCACCCTCTCGGGGCGTCGGGGAGTCGAATCATGG CGCACCTGACCCACGAACTTCGCCGCACAGGCAAAAAGTACGGTGTAGGT GCCGCCTGCATCGGCGGCGGGCAGGGTATTGCCATTATCATCGAGAGTGT GGCGTGAGATCGGCGGATGTGATTGGGGTCCTTGACAACAGCAGCGGAAC GTATAGGAGGAAATAGACAATTTACCAAGCTGGCCAGGGTTTACTGGGGA GATCTAAGGCAAAGTCACCCTTCGGTGGGGCGCATGTTGTGTTGTGTTGA TACTATATATGTTTCAAGTGTTCTGAGTAGAGAGTTTGGACACATTTGCC CCCTCATCTCAAATTTTTGCAGGAGATGCGCGCCCTCAGATAGAACTCTG CGTGTGTACACTGGTAGAGGAGACCGTGACAGCGATATACTGATAGTGTT AGCAACACAAGGTTGGAGTTCGTATTCAGCGCGTTCGTGTGACAAAAATA TTAGACAAACATGCTGTAGATTTGTCCATCTCGTACAAGCTGACTAATGG ACAATTGGATTGGGTGGTATATTGCCTCTATTGGCACTCGGCAGCGGCAA CGACGTCAGGAGGTGCTTGTACCAGCTCAATCAACACGCCTTCTCCGCTC AAGGGCTTCTCGGCGTTTCCCTTGGGGTGTATGAAGGCCACGTCGTGACC GCTTGCGCCTTTTCTGATTCCACCGGGTGTGAACCGCATGCCATGGGCCG TCAGCCACTCTACGCATGCTGGCAGAGGGTGCACCCACAATCCGACATGG TTCAGCGTAGGCACGTGCACCCTGCAAGCAGAGACGTGGCGTTGTCGCGT GCGCTTCAATGAGGTAACACCATAACTTCAGGGAGAATTTTGCTACGATG GTGGATACAAAGTGTTCGTAGCTTCGTATACTTGGACGGTCTCGCACGCT AAGCTTTGATTTTTTTTACCGTTCCGCAACCGTTCTCACTTGGGGGGGCT CTCCGAATCCAAGGGCTGCATCAGGTCCACCTCAACCGCATTTGAGCCGA GCCCCAGTCTTAAAATGTCCTCATCCACGTTTTCATTCTGCACGCCAAGG ATCGATCAGACAGGGATAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig15:69914..74932-

>mRNA_H-paniculata_contig15.2976.1 ID=mRNA_H-paniculata_contig15.2976.1|Name=mRNA_H-paniculata_contig15.2976.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2550bp|location=Sequence derived from alignment at H-paniculata_contig15:69914..74932- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTGCGACTGGAGTATTTATCGTGGGAGCGAAACGCACTGCATTTGG
AGCCTTCGGAGGTTCCTTGGCTAAACTCAGATGACTGCGACTGGAGTATT
TATCGTGGGAGCGAAACGCACTGCATTTGGAGCCTTCGGAGGTTCCTTGG
CTAAACTCAGCGCTACGGAGTTGGCTGTTGCCTCGTCAAAAGCTGCGGTG
ACACAAGCTGGAGTGGATCCTTCTCAAGTCGATGCAACGTTCGTCGGGAA
CGTCATTCAATCCAGCGCTACGGAGTTGGCTGTTGCCTCGTCAAAAGCTG
CGGTGACACAAGCTGGAGTGGATCCTTCTCAAGTCGATGCAACGTTCGTC
GGGAACGTCATTCAATCCAGCCCGGATGCATGCTATCTGGCTCGTCATGT
GGCGCTGAAGGTGGGGGCTCCAGTCAGCTCACCAGCTTTGACTGTTAACC
GCTTATGTGGCAGCGGCTTCGAAACAGTAATTCAGCCCGGATGCATGCTA
TCTGGCTCGTCATGTGGCGCTGAAGGTGGGGGCTCCAGTCAGCTCACCAG
CTTTGACTGTTAACCGCTTATGTGGCAGCGGCTTCGAAACAGTAATTCAG
GGCGCGGAGGCTATTCAGCTGGGAAAGGCTGCCATCACTCTCTGCGCAGG
TTCAGAAAACATGAGCGCAGCTCCGCTGGTTGTCAGTGGCAACGATGCCA
GGGCGCGGAGGCTATTCAGCTGGGAAAGGCTGCCATCACTCTCTGCGCAG
GTTCAGAAAACATGAGCGCAGCTCCGCTGGTTGTCAGTGGCAACGATGCC
AGGTGGGGTGTTGCTTTGGGGAGCGGGCTGAAGATGGAAGACAGCTTGTG
GGCTGGCTTGACTGACTTGCACATCGGGCTGCCGATGGGGATGACGGCGG
AGAATATCGCAGAGAAGGTGGGGTGTTGCTTTGGGGAGCGGGCTGAAGAT
GGAAGACAGCTTGTGGGCTGGCTTGACTGACTTGCACATCGGGCTGCCGA
TGGGGATGACGGCGGAGAATATCGCAGAGAAGTATGGAATCACTCGCCAA
CAATGTGACGAATATGCTGTGAGATCCCAGAGGCTGTGGGGTGTGGGGCA
TGGTAATGGTGCATTCACCGAGGAGATGGCGGCAATCGAAGTCAAGACCA
AAAAAGGCTCGAAGTATGGAATCACTCGCCAACAATGTGACGAATATGCT
GTGAGATCCCAGAGGCTGTGGGGTGTGGGGCATGGTAATGGTGCATTCAC
CGAGGAGATGGCGGCAATCGAAGTCAAGACCAAAAAAGGCTCGAAGGTGA
TGGACACAGACGAGCATCCGCGTCCGGACACATCAGAGGAGAAGATTGGT
AGCCTTCGCCCCGTATTCATGAAGGACGGTGTGGTGACCGCTGCCAATGC
CTCTGGGATTTGTGATGGAGCAGGCAGGTGATGGACACAGACGAGCATCC
GCGTCCGGACACATCAGAGGAGAAGATTGGTAGCCTTCGCCCCGTATTCA
TGAAGGACGGTGTGGTGACCGCTGCCAATGCCTCTGGGATTTGTGATGGA
GCAGGCAGTCTCGTGGTGGCCGGGGAATCGGCCCTTTCATCGAACAACAT
CACCCCATTGGGACGTTTAGTGGCCTGGCATGAGGTCGGTTGCGATCCAG
CCATCATGGGCATTGGGCCCGCCGATGCCATCCGTGGTGCTTTAGTCAAG
GCGGGACTAACTTTGGCGGACATGGACATTGTCGAGTCTCGTGGTGGCCG
GGGAATCGGCCCTTTCATCGAACAACATCACCCCATTGGGACGTTTAGTG
GCCTGGCATGAGGTCGGTTGCGATCCAGCCATCATGGGCATTGGGCCCGC
CGATGCCATCCGTGGTGCTTTAGTCAAGGCGGGACTAACTTTGGCGGACA
TGGACATTGTCGAGGTCAACGAAGCATTCGCGGCGCAATACTTGGCGGTG
GAGAAGGAGCTTGGTCTTGACCCGTCCAAGACAAACCAAAATGGGGGCGC
CATTGCCTTGGGTCACCCTCTCGGGGCGTCGGGGAGTCGAATCATGGCGC
ACCTGACCCACGAACTTCGCCGCACAGGCAAAAAGTACGGTGTAGGTGCC
GCGTCAACGAAGCATTCGCGGCGCAATACTTGGCGGTGGAGAAGGAGCTT
GGTCTTGACCCGTCCAAGACAAACCAAAATGGGGGCGCCATTGCCTTGGG
TCACCCTCTCGGGGCGTCGGGGAGTCGAATCATGGCGCACCTGACCCACG
AACTTCGCCGCACAGGCAAAAAGTACGGTGTAGGTGCCGCTTGGGGGGGC
TCTCCGAATCCAAGGGCTGCATCAGGTCCACCTCAACCGCATTTGAGCCG
AGCCCCAGTCTTAAAATGTCCTCATCCACGTTTTCATTCTGCACGCCAAG
GATCGATCAGACAGGGATAATTGGGGGGGCTCTCCGAATCCAAGGGCTGC
ATCAGGTCCACCTCAACCGCATTTGAGCCGAGCCCCAGTCTTAAAATGTC
CTCATCCACGTTTTCATTCTGCACGCCAAGGATCGATCAGACAGGGATAA
back to top