mRNA_H-paniculata_contig14994.2965.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14994.2965.1
Unique NamemRNA_H-paniculata_contig14994.2965.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14994.2965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14994contigH-paniculata_contig14994:2..856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size855
Cds size465
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14994.2965.1prot_H-paniculata_contig14994.2965.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14994 3..467 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929198.3178153-UTR-H-paniculata_contig14994:1..21622929198.3178153-UTR-H-paniculata_contig14994:1..2Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14994 2..2 +
1691480767.0298998-UTR-H-paniculata_contig14994:1..21691480767.0298998-UTR-H-paniculata_contig14994:1..2Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14994 2..2 +
1622929198.3524022-UTR-H-paniculata_contig14994:467..8561622929198.3524022-UTR-H-paniculata_contig14994:467..856Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14994 468..856 +
1691480767.04548-UTR-H-paniculata_contig14994:467..8561691480767.04548-UTR-H-paniculata_contig14994:467..856Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14994 468..856 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929198.3353965-CDS-H-paniculata_contig14994:2..4671622929198.3353965-CDS-H-paniculata_contig14994:2..467Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14994 3..467 +
1691480767.0377157-CDS-H-paniculata_contig14994:2..4671691480767.0377157-CDS-H-paniculata_contig14994:2..467Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14994 3..467 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14994.2965.1

>prot_H-paniculata_contig14994.2965.1 ID=prot_H-paniculata_contig14994.2965.1|Name=mRNA_H-paniculata_contig14994.2965.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=155bp
MWKQRKRFLPQPSGGKKNTKKKTTDNFWRLRLRSLRAARKYEELKQEVQL
FIVEERKLGRGHGVSSLCTGPLSVRLHQVSGAKELGAPVVGQSGPSALRR
VWSCLLMTKSSQLKNWEHSWLESEILVPRGRVRSCPLMTKSSWLKSCKCL
WLDD*
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mRNA from alignment at H-paniculata_contig14994:2..856+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14994.2965.1 ID=mRNA_H-paniculata_contig14994.2965.1|Name=mRNA_H-paniculata_contig14994.2965.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=855bp|location=Sequence derived from alignment at H-paniculata_contig14994:2..856+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGTGGAAGCAGCGGAAAAGGTTTTTGCCTCAGCCTTCCGGGGGTAAAA
AAAACACAAAAAAAAAAACGACTGATAACTTTTGGCGTCTGAGGTTGAGA
TCGCTGCGCGCAGCGAGAAAATATGAGGAATTGAAGCAAGAGGTTCAGCT
CTTCATTGTAGAGGAAAGAAAGTTGGGTAGAGGCCACGGGGTTTCTTCTC
TTTGTACAGGACCGTTGTCGGTGCGCTTGCACCAAGTCTCTGGGGCTAAA
GAGCTGGGAGCGCCCGTGGTTGGACAAAGTGGTCCTTCTGCGCTGAGACG
GGTGTGGTCCTGCCTGCTCATGACAAAATCTTCACAGCTCAAGAACTGGG
AGCACTCGTGGTTGGAGAGCGAGATCTTAGTGCCGCGAGGACGGGTGAGA
TCGTGCCCGCTCATGACGAAGTCTTCATGGCTCAAGAGCTGTAAGTGCCT
GTGGTTGGACGACTAAGGTCAGCTAGTGCGGGGACTGGCGGGTCTATGCC
TGTCTGTAAGGAGTCGCTACCACTGAAGAGCGAAGAGCGCCCACGGCTGG
CGATGTGAGTAGCTCCGTTGCTGCGGAAGCGGATGGATCTATGTCTGTCT
TCGAAAAAAGACGTTATTACTAAAGAGTGAGGAGCGCCCGCGACGCGCAC
TGCTGCCGTGGGTGTGGGCGAGGCTGCGTTCGCCCGTATCCAAGTCAATG
CGATCCAAGAGCTAGGAGCTTGTGTGGCGTCCCACTGCCGCGGAGGAGGA
CGGGGTGATACCCGTGCTTGAGATGGCGGATGCTAAGCAGCTGCCGAGGG
GGGAAGCTGGTTTAACCTTGGAATAAGAGTCTGCAGGGCTCCTGGCTGAA
GATGG
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Coding sequence (CDS) from alignment at H-paniculata_contig14994:2..856+

>mRNA_H-paniculata_contig14994.2965.1 ID=mRNA_H-paniculata_contig14994.2965.1|Name=mRNA_H-paniculata_contig14994.2965.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at H-paniculata_contig14994:2..856+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGAAGCAGCGGAAAAGGTTTTTGCCTCAGCCTTCCGGGGGTAAAAA
AAACACAAAAAAAAAAACGACTGATAACTTTTGGCGTCTGAGGTTGAGAT
CGCTGCGCGCAGCGAGAAAATATGAGGAATTGAAGCAAGAGGTTCAGCTC
TTCATTGTAGAGGAAAGAAAGTTGGGTAGAGGCCACGGGGTTTCTTCTCT
TTGTACAGGACCGTTGTCGGTGCGCTTGCACCAAGTCTCTGGGGCTAAAG
AGCTGGGAGCGCCCGTGGTTGGACAAAGTGGTCCTTCTGCGCTGAGACGG
GTGTGGTCCTGCCTGCTCATGACAAAATCTTCACAGCTCAAGAACTGGGA
GCACTCGTGGTTGGAGAGCGAGATCTTAGTGCCGCGAGGACGGGTGAGAT
CGTGCCCGCTCATGACGAAGTCTTCATGGCTCAAGAGCTGTAAGTGCCTG
TGGTTGGACGACTAAATGTGGAAGCAGCGGAAAAGGTTTTTGCCTCAGCC
TTCCGGGGGTAAAAAAAACACAAAAAAAAAAACGACTGATAACTTTTGGC
GTCTGAGGTTGAGATCGCTGCGCGCAGCGAGAAAATATGAGGAATTGAAG
CAAGAGGTTCAGCTCTTCATTGTAGAGGAAAGAAAGTTGGGTAGAGGCCA
CGGGGTTTCTTCTCTTTGTACAGGACCGTTGTCGGTGCGCTTGCACCAAG
TCTCTGGGGCTAAAGAGCTGGGAGCGCCCGTGGTTGGACAAAGTGGTCCT
TCTGCGCTGAGACGGGTGTGGTCCTGCCTGCTCATGACAAAATCTTCACA
GCTCAAGAACTGGGAGCACTCGTGGTTGGAGAGCGAGATCTTAGTGCCGC
GAGGACGGGTGAGATCGTGCCCGCTCATGACGAAGTCTTCATGGCTCAAG
AGCTGTAAGTGCCTGTGGTTGGACGACTAA
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