mRNA_H-paniculata_contig14986.2962.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14986.2962.1
Unique NamemRNA_H-paniculata_contig14986.2962.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14986.2962.1 vs. uniprot
Match: D7FZW2_ECTSI (Dicer-like 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW2_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 1.400e-24
Identity = 48/61 (78.69%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:    1 LQVGHGIRKHDYEAAYKNQKLLLGVPAPALRHSFAQHLIRGEKVMDPDAGVRGRVKVRHYS 183
            L VGHG+RK DY+AA K+Q+LLLGVPAPAL+HSFAQHL+RGEKVMDPDAGVR RVKV+  S
Sbjct:  953 LAVGHGVRKPDYDAADKSQRLLLGVPAPALKHSFAQHLVRGEKVMDPDAGVRSRVKVKRPS 1013
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BLAST of mRNA_H-paniculata_contig14986.2962.1 vs. uniprot
Match: A0A6H5KQM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQM7_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 4.880e-24
Identity = 47/57 (82.46%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:    1 LQVGHGIRKHDYEAAYKNQKLLLGVPAPALRHSFAQHLIRGEKVMDPDAGVRGRVKV 171
            L VGHG+RK DY+AA K+Q+LLLGVPAPAL+HSFAQHL+RGEKVMDPDAGVR RVKV
Sbjct: 1372 LAVGHGVRKPDYDAADKSQRLLLGVPAPALKHSFAQHLVRGEKVMDPDAGVRSRVKV 1428
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BLAST of mRNA_H-paniculata_contig14986.2962.1 vs. uniprot
Match: A0A2S1PRV6_FUCSE (Putative dicer (Fragment) n=1 Tax=Fucus serratus TaxID=87148 RepID=A0A2S1PRV6_FUCSE)

HSP 1 Score: 88.6 bits (218), Expect = 4.910e-19
Identity = 41/55 (74.55%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 LQVGHGIRKHDYEAAYKNQKLLLGVPAPALRHSFAQHLIRGEKVMDPDAGVRGRV 165
            L V  GI +HDY+AA K+Q+LLLGVP PALRHSF QHL+RGE+VMDPDAGVR RV
Sbjct:  659 LAVVRGIHEHDYKAACKSQRLLLGVPVPALRHSFVQHLMRGERVMDPDAGVRRRV 713
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14986.2962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FZW2_ECTSI1.400e-2478.69Dicer-like 3 n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5KQM7_9PHAE4.880e-2482.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2S1PRV6_FUCSE4.910e-1974.55Putative dicer (Fragment) n=1 Tax=Fucus serratus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14986contigH-paniculata_contig14986:271..459 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.8
Seed ortholog evalue5.9e-20
Seed eggNOG ortholog2880.D7FZW2
KEGG koko:K11592
KEGG Pathwayko05206,map05206
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ribonuclease III activity
EggNOG OGsCOG0571@1,KOG0701@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Exons1
Model size189
Cds size189
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929198.0314343-CDS-H-paniculata_contig14986:270..4591622929198.0314343-CDS-H-paniculata_contig14986:270..459Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14986 271..459 -
1691480766.9173555-CDS-H-paniculata_contig14986:270..4591691480766.9173555-CDS-H-paniculata_contig14986:270..459Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14986 271..459 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14986.2962.1prot_H-paniculata_contig14986.2962.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14986 271..459 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14986.2962.1

>prot_H-paniculata_contig14986.2962.1 ID=prot_H-paniculata_contig14986.2962.1|Name=mRNA_H-paniculata_contig14986.2962.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
LQVGHGIRKHDYEAAYKNQKLLLGVPAPALRHSFAQHLIRGEKVMDPDAG
VRGRVKVRHYSS*
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mRNA from alignment at H-paniculata_contig14986:271..459-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14986.2962.1 ID=mRNA_H-paniculata_contig14986.2962.1|Name=mRNA_H-paniculata_contig14986.2962.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=189bp|location=Sequence derived from alignment at H-paniculata_contig14986:271..459- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTACAGGTGGGCCATGGAATCCGCAAGCACGACTACGAGGCCGCATATAA
AAATCAGAAGCTTCTTCTCGGAGTGCCTGCCCCTGCCCTTCGGCATTCCT
TCGCCCAGCATCTGATCCGCGGAGAAAAAGTCATGGACCCTGACGCCGGA
GTCAGGGGTAGGGTCAAGGTGAGGCACTACAGTAGCTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig14986:271..459-

>mRNA_H-paniculata_contig14986.2962.1 ID=mRNA_H-paniculata_contig14986.2962.1|Name=mRNA_H-paniculata_contig14986.2962.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig14986:271..459- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTACAGGTGGGCCATGGAATCCGCAAGCACGACTACGAGGCCGCATATAA
AAATCAGAAGCTTCTTCTCGGAGTGCCTGCCCCTGCCCTTCGGCATTCCT
TCGCCCAGCATCTGATCCGCGGAGAAAAAGTCATGGACCCTGACGCCGGA
GTCAGGGGTAGGGTCAAGGTGAGGCACTACAGTAGCTAGCTACAGGTGGG
CCATGGAATCCGCAAGCACGACTACGAGGCCGCATATAAAAATCAGAAGC
TTCTTCTCGGAGTGCCTGCCCCTGCCCTTCGGCATTCCTTCGCCCAGCAT
CTGATCCGCGGAGAAAAAGTCATGGACCCTGACGCCGGAGTCAGGGGTAG
GGTCAAGGTGAGGCACTACAGTAGCTAG
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