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Homology
BLAST of mRNA_H-paniculata_contig14985.2961.1 vs. uniprot
Match: D7G4K9_ECTSI (Cyclin D2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4K9_ECTSI) HSP 1 Score: 267 bits (683), Expect = 2.920e-75 Identity = 132/207 (63.77%), Postives = 165/207 (79.71%), Query Frame = 2
Query: 2 RHLWYMGEPSGLTEPLSNDWDKHSP--VKEECVLAGLLVDLSMLDRCMFNFMPGTLAAAALFLARVTAFFYSKEEVIVTPHAVVEKNNREVLRLFDQGVCRPFVPMDESFEKRPFGAPGLGEFVASQPREAEAVRKCVDRLWLVQQDFLLHMAGETPTRPVLFRYQHMFKGIKDKFVPPNSRRLQAWLRLGVVHKNELDALLDKHLP 616
RHL MGEPSGL PL+ DW++HS ++EE +LAGL+VDLS+LD +F F PGT+AAAALFLARVT+ +Y+KE + VTP +VV K NREVLRL+ + VCRPFV ++ E RPFGAPGLGEFVASQP EA AVR+CV+RLWLVQ+DF H++G + VLFRYQHMFKGIK+KFVP S RLQA+ +LG+V + EL+ +LD+HLP
Sbjct: 426 RHLTSMGEPSGLDIPLTMDWEEHSHPRIREEHILAGLVVDLSLLDNFLFLFRPGTVAAAALFLARVTSMYYAKEGMWVTPCSVVAKKNREVLRLYGKDVCRPFVKPNKDLELRPFGAPGLGEFVASQPAEATAVRRCVERLWLVQRDFFDHLSGRQSPQHVLFRYQHMFKGIKEKFVPQGSIRLQAYQKLGLVQRGELNRMLDEHLP 632
BLAST of mRNA_H-paniculata_contig14985.2961.1 vs. uniprot
Match: A0A6H5JEY8_9PHAE (Cyclin N-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEY8_9PHAE) HSP 1 Score: 261 bits (667), Expect = 5.790e-72 Identity = 129/207 (62.32%), Postives = 163/207 (78.74%), Query Frame = 2
Query: 2 RHLWYMGEPSGLTEPLSNDWDKHSP--VKEECVLAGLLVDLSMLDRCMFNFMPGTLAAAALFLARVTAFFYSKEEVIVTPHAVVEKNNREVLRLFDQGVCRPFVPMDESFEKRPFGAPGLGEFVASQPREAEAVRKCVDRLWLVQQDFLLHMAGETPTRPVLFRYQHMFKGIKDKFVPPNSRRLQAWLRLGVVHKNELDALLDKHLP 616
RHL MGEPSGL PL+ DW++HS ++EE +LAGL+VDLS+LD +F F PGT+AA+ALFLARVT +Y+KE + VTP +VV K NREVLRL+ + VCRPFV ++ E PFGAPGLGEFVASQP EA AVR+CV+RLWLVQ+DF H++G + VLFRYQHMFKGIK+KF+P S RLQA+ +LG+V + EL+ +LD+HLP
Sbjct: 551 RHLTSMGEPSGLDIPLTMDWEEHSHPRIREEHILAGLVVDLSLLDNFLFLFRPGTVAASALFLARVTGMYYAKEGMWVTPCSVVAKKNREVLRLYGKDVCRPFVKPNKDLELLPFGAPGLGEFVASQPAEATAVRRCVERLWLVQRDFFDHLSGRQSPQHVLFRYQHMFKGIKEKFMPLGSIRLQAYQKLGLVERGELNRMLDEHLP 757
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 263.8 |
| Seed ortholog evalue | 8.3e-68 |
| Seed eggNOG ortholog | 2880.D7G4K9 |
| KEGG ko | ko:K06627 |
| KEGG Pathway | ko04110,ko04152,ko04218,ko04914,ko05161,ko05165,ko05169,ko05203,map04110,map04152,map04218,map04914,map05161,map05165,map05169,map05203 |
| KEGG Module | M00693 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | cell division |
| EggNOG OGs | COG5024@1,KOG0654@2759 |
| COG Functional cat. | D |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko00002,ko03032,ko03036 |
| Exons | 6 |
| Model size | 2453 |
| Cds size | 792 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig14985.2961.1 >prot_H-paniculata_contig14985.2961.1 ID=prot_H-paniculata_contig14985.2961.1|Name=mRNA_H-paniculata_contig14985.2961.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=264bp
MGEPSGLTEPLSNDWDKHSPVKEECVLAGLLVDLSMLDRCMFNFMPGTLA
AAALFLARVTAFFYSKEEVIVTPHAVVEKNNREVLRLFDQGVCRPFVPMD
ESFEKRPFGAPGLGEFVASQPREAEAVRKCVDRLWLVQQDFLLHMAGETP
TRPVLFRYQHMFKGIKDKFVPPNSRRLQAWLRLGVVHKNELDALLDKHLP
VAEIVVPRVPTSVAGIGGMVAVTAPSGGGQEATALNHSKRVSPHSTSAAA
GAAEGAGSFPFSD* back to topmRNA from alignment at H-paniculata_contig14985:96..6276- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig14985.2961.1 ID=mRNA_H-paniculata_contig14985.2961.1|Name=mRNA_H-paniculata_contig14985.2961.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6181bp|location=Sequence derived from alignment at H-paniculata_contig14985:96..6276- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCACCTGTGGTACATGGGAGAACCTTCTGGCCTGACTGAGCCTCTTT
CTAATGACTGGGATAAACATTCGCCTGTTAAGGAGGTGAGATTTGTTGTG
GGTCCTCTTATGGGCAGCAGTAACAGTGATGCACATCTGTGAGAAAAACT
GTTAAAAAAAAAAAAGTTCTTTTGACACACTTGGATTTAAAATTTGGAGC
AGTTTGAAGGATTTAGTAGTCTTCAGCTAAGAACAGGACGTTATCCGCAA
CACACACACACACATATATATATATATTATTGCATGGCCTCAAGAGTGAA
AAATGCTGCCAAGTTTACTTGCAATGAATGCTGCACTTACATTGAGACTG
AATTCTGCGTAGTTTTTGTGCTTCCTTTATTTTTAAATGTCTGAATTCGA
GAGAAAATAGTTTATTTTTCAGGACTCTTATCGTTTGGTCTTGGTATAAT
ATGCCCGGGTTCAGTCTGTTTCTATCCCGATTATGTGTTTATATGTTTAG
TCCTCTCTGTGTGCTTGTGCTTGTGTTTGTGCTTCCATCTGAATATAGTT
TACAGGCTGGCTGGCTCGGAAGAAAGCAGGTTGCAAATGACCTCAGGCTG
AAGTAATGCACAAATTCGACAATTTTAAGTTTGCCGGGCGTGAGGTTCTG
CCGACCGCATCACGTTTTGTTGGTGTGTGTGGTGCCGACAAAATATTCAG
TAGTCCTCTCTGCGGTTTTGCTGTGCTATTTTTGCCCTCAGGAATGTGTC
TTGGCCGGGCTCCTGGTGGATCTTTCGATGCTAGATCGTTGTATGTTCAA
CTTCATGCCTGGCACACTCGCAGCTGCTGCTCTGTTTCTGGCTCGCGTAA
CGGCTTTTTTCTATTCCAAGGTAAGGGAAGAGAGGGACGAGAGATACGTG
ACTTGAGGCTTTTTTTATTTTTGCAAGAGGGTGTTTCAGTTGTTTACCGT
TGATACTGCTGAAGGGCGTTGTCAATGCTAGTGTCAATTTTTGCCTGCCT
GTGGTGAGCAATGGGTTGGACAAAAGTGACTGCTATGCTCATGTGCTGGT
TGACATGCAATATTTTTGTTCTGGTAATGATGCTGCGTGGATGGTTTGGA
TGAGCAGCGGTCTAAGATGATCGAGAAGCGGTTAACCGGTTTGCCCCGTG
TAAGGCGGTTCATTAACCATCGTTTGCCCTTTTTTTTTTATTTTTTTATA
GACGAGTGCATCTCTGGTGGGTGGGTGTTGAGGGAGCCTAAGTAGGTGAG
AGCAGTAGCCTGGTTAATTCATAACGGGTTTCCCTATTACACACGTACCC
TTCGCCACCAATAAACACCCCCACCCCCCCTATTGATTGAATGTTGCTAA
TAAATGTCGACAAGTGAAGTTTGAAGTTGGCTGCATAACCGTAACATGGG
TACATTATCGAGTTATTTTATGATCCCCCCCTCTATCCCCATCCCCTAAC
CCCCACCAGGAAGAAGTTATCGTAACGCCTCACGCTGTGGTGGAGAAGAA
CAACCGTGAGGTGCTGAGGTTGTTCGACCAAGGCGTGTGCAGGTGAATTT
GTTCCCAGCACGAAAGAAGATAAAAAAATAGCCACGTCCTTCACTTCCAC
ATGAAAAAAAGAAACGACGTGGGAAGTTCATTTCGAAGGACAGATCGCAG
TCAATCAAAACAAAGCCTATTCTGATGTGGAGTGCGGAGAATGCTGCATG
ACTTACGCCGTTCAACTCCTCCGGTATTTTTACTCAATTGTTTTTTACAC
TGGCAGATGAGTCACGGCTGCAATATTTACCAACGGGCTGGCCCGCCTAC
ATTCGGGACCACAAAATTTTGGTGGATAAAACAATTGGATCAAAATGTCA
TGAATCAAAATTATGAGTTTGTATCAAAAACGCATATTGAAAACAAAAAG
AACATTTAGATGAATGAATATCGTCGTAACCGGGGGTTTCAGAATGTCGC
GCGAAAAAGCCGGTTGTGGAGGTAACTGGTAACGGCATTGACAGCATAAT
AGTGAGCTAGACTAAAAATGCTAGGTTTGCATGACTGGCCGCAACCAATA
CGCGGGTTTTATTTAGCTTGAATGGTGCGGCAGCAGCTGCCTCTGAGAGA
GTATTCTGTACCTCACTACCTACGTCGGTGTGTTGCTTGGGTTGGTTTGA
TGATTGCAGGCCTTTCGTACCGATGGATGAGTCTTTCGAGAAGCGGCCGT
TCGGCGCCCCAGGACTTGGAGAATTCGTCGCGAGCCAGCCACGAGAAGCA
GAGGTAAGTGAACGCGTACTCTCGGGGAAAGACGTCCTGTATGTACTTAC
ATACATATACGACGGAGGGATTATCAGGGAGCACATTCGTGATTTAACCC
TTGAGAGGAAATTATGACACCTGAACCAGCTGTGGAGCGCTTGCTTTTAA
TTATTTGACCATTACAAAAAAAAACCCGGGTTGTTTGCCCGTTCCCGCTC
TACATTTTGAATCCAAGATGAAACCCTCCTAAACCGCGAAAAACGAGTCC
CTTTTTGCACCTGGGATAACGCTAATCACCTCTCTTTGAGGTGATATAAG
CATTCCGCCGACTTGTTGGTCATCATCCATTATTCACGTGTGGGCGTTAG
CAAATCCATCTTTTGGTGGTCACGAAATTCGGTTCCTGAAGGGTTTCTAA
GCTGAGCACCGGCGCTAAAGGGGTTGATAAATACAGTTCTGTGTGTATAT
GTGTGTGTGTTTTCGAGATCTAGACTGATATTTCTCCTTTACATTTTTTT
TTTATGACCATACGTTATCGTGGGAACGAATTATATTTTCTTATGGCGAG
GAGGAAGGAATGATCGTCTTTTTTTTCTTGGGATTCCTGAGAGACCAGGA
CATTTCTTTTTATTCACTAGGAAATCACGTCCAGCGTTCGTACACCAGGT
TTAAATCATGATGTATACGTGAAATTTCACCCGGGCCAAGTATAGCGTTT
TGTGTATGTATCTTCCCACACGACCACAGGCCGTCCGAAAGTGTGTGGAT
CGGCTGTGGCTCGTCCAGCAAGACTTCTTGCTTCACATGGCGGGTGAGAC
TCCCACTCGCCCGGTGCTCTTCCGCTACCAGCACATGTTCAAAGGAATAA
AGGTGCGTCAGCGGAAGGGATAGTATCTTTCGGGTCAGAAATTAAATTTG
TAGGCCGCCCGAACACGATCTAGACTTTGTTACTGTGGAGAATGACGAGG
TACGGCGTGGAAAAAAATGTGGAGAGACAAGTGATGAGAGTGTTAAAAAC
GAGTTGAACATGGTGAAATCTGCACTGCATAATGTAGGAACATGACAGTG
ACAAGTCAAATACAACGGAGGTATGCTCATTCACAAAGTGAAAAAGCTGC
TGATGCGGCGCCCGGGGGGGAGGGGGGAGGAGGAGGGGGAGGGGCGAAAT
GTTCCAGATGCCGACTCTACCATCTGTGGTGTCTGTACTGAACGGTTGTA
CTGAGTTTAGAACTCGTGTGGTTTCTTCGTTTAACACGTTTCATCTTACA
CGAATTTCAAACGTGATATTTTCATCATTGCTTGTTGAGGCCAGACCGTT
TAGGTGGAACGCTTTTACTTTGGAGAAAATGTGTTATTCATCATGTTCCT
TTACTTACGATGGGGGTTTCGCTAGTATCCCCGCTTTCAGATATGTGCCC
GCCACCAGAAAGCCCCCTGCTGCCATATGCTCTTACTGTTGCTCATGAGA
GTGAGCCCTGTGATGAGCACCGTACTACTGCACTGGTGTCCATTCCAGCG
GTCAAGAGCGGGTGTGAGGGATGCACGTAGTATCTGATGTATCTTCACTT
TACAAGACGTGAAAACGCCGCAATAGTTCACGTCTGACTCGTGCAGCGTT
GCAAACTCAACTTGATAGTGTCGTATTCAGCCGGACATGCGCATCTTCCA
CACTTGATGTGCCAAGTATAACCTGCCGGGTGCCTGCCTGCCTGCCTGCC
TATAGAGGGAGTGCACGGGGGGTGGGGGTTACATGTTGCAGCTATTTACA
ACAGCGAAGCAAAACATGCTTCGAGCTCCCGAAGAGAACAGGAAATATGT
GTCGTAATTTAACAGAATAAGCGTGTGTGTACATTGTATCGGGATTGTTT
TTTTGAAGAGTTGCTTTATGACGAAAAGCCAATTTGTAGATGTGCCTTGA
TTTTTACTTTGACGTTGATAACGACCGACTTTACCGGCGTGTATGTACCT
TAGCCTGCGTACCCTACCCTTGTGTGTAACAAAAAAAAACAGGACAAATT
CGTCCCGCCGAACTCGCGGAGGCTTCAAGCCTGGCTGCGCCTGGGCGTGG
TCCATAAGAACGAGCTCGACGCCCTGCTCGATAAACATCTTCCAGTCGCA
GAAATCGTGGTACCTCGCGTACCTACGTCAGTGGCCGGTATTGGTGGGAT
GGTCGCAGTGACGGCACCTTCGGGGGGGGGGCAGGAGGCGACGGCACTCA
ACCACTCAAAGAGAGTGTCACCCCATTCCACCTCGGCAGCGGCAGGAGCA
GCAGAGGGAGCAGGCTCCTTTCCTTTTTCTGATTAAAGCAATGCGTTAAT
TAGTGCGGAGAACATCATAGGTCGTTATTACAATTCGTTTCTATCTCGTT
CCGTTTCGTTTCGTTCCGTTCCGTTCCGTTTCGTGTTGTTTTGTTTGGTT
TCGAGTTTTTCCATAAAGGCACAACGCGTTAGTCGTTGTGTATGTGTATG
TGTATGTGTATGTGTATGTGTGTGGTTGTTGTGCACGTGTACGCTTGCTG
GTCTCGCGGTTCGTCGTTCCATCGTCGTCAGCCCAAATTATAAAACAAAT
TTTTCAGTGTAAGATTGTATTACATTTGCACACACGTGACTGCGTTCTTT
TTTGCGTGTGTGTGTGTGTGTTTGTGTTTGTGTTTGTGTGTGTGTTTGTG
TTTGTGTTTGTGTGTGTGTGCGTGCGTGCGTGCGTGTGTGTGTTTATGTA
TGTGTGTGTGTGTGTTTGTATGTTTGGATCTCGTGCGGATAATGCATGCT
GAGGGTGATTTCGTTTGCGCATCGTACCTTTTCATGAAGGTGGTTCGTTT
GCGTACTGTACCTGTTTTTGAGGGTGGATGCTGTTTTCGGGGGGCGGGGG
CAATCAGAAATATAAAATGATGTACCACGTCCGACCCCGGGAGAGTATTG
GGTGGAGTGGCTCCTTTTTCGAGGACAGATAGACCCGAACAGCAACAACA
CCGACACAATAGATCCTTGGCCACGATACAACTGCTATTCGTGTGTAGCT
GCTACTATGGCTCAGGGAGGGATTCATCCTGAAATTTTGTTTGTTGAAAT
CGTTTTCTTCGCTAGTATAGATGAGAGGCGAGAGGCGGGGAGCAGTGAGA
GGGTGTAGGATGCGCCGCAGAGGTGATGATATAAGAAAAGGCGGAATATA
CCTTGAGAAGGGTCGTCGGAAAAGCCATGCCTTGTTTTTTGTGCTGGTTG
GTGCTGTTGCCGGAGGTCAAAAGTCTGTTTTTGCCTCCACCCCCCTAGGA
GGGGGTTTGACGATCGTCCCCTCTTTTCAGCGTAACAAACCCCGCGTACT
ATATATACAGGAGGACATTCTTGAGGGGAGGGAGCACTCAGAGAGTAAAG
TTGGAAAATGCGGGATTGTAAGGAGTTTTATTATCGCCTAACATCTCCAG
TGCTGTGCTCGGTTTGGTGTTGGTATGTTATACATGGGGGCACGGGTAGT
CGTTTTATTTGAATTGTTTTTTCATTGCGGTTATACGGTCTGGCTGCGGT
CGTTTGCTTCCATCTTGTAGTGATGCACATGACCCCTCCCCCAAATGTAT
GCTTGACTTGAAAGTACACAATGCGTATTTCTCTTGCCCAGGGTGGTTCT
TATTACCCGAGCTTACCTCGAAGGTTATTTTTGTCGGGCTCTTTACGGGT
GTCTCTACTGCCCGTGCGGAAATACGACATATATCCACAATAAGGTGCAA
ATGTACAGTTAGTGGGGGTTACGGAGGATTGCCGCAAACTAAACAAACGG
TCGATGAAAGAGTTAATGGAGAGGTGATTATGGTGGTCAATGTATCTGCG
CCGTGCGTGTACATTCGGCCGCTTCGAAGGGGACACTGTCGACTGTTGAC
ACGCAGTTAGGACAGATAAATCACTAATACCATCTATCAGACCTCCGCTG
TTATTTTCTCTTTGTTCCGGAGGGCGGGAGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig14985:96..6276- >mRNA_H-paniculata_contig14985.2961.1 ID=mRNA_H-paniculata_contig14985.2961.1|Name=mRNA_H-paniculata_contig14985.2961.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1584bp|location=Sequence derived from alignment at H-paniculata_contig14985:96..6276- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAGAACCTTCTGGCCTGACTGAGCCTCTTTCTAATGACTGGGATAA
ACATTCGCCTGTTAAGGAGATGGGAGAACCTTCTGGCCTGACTGAGCCTC
TTTCTAATGACTGGGATAAACATTCGCCTGTTAAGGAGGAATGTGTCTTG
GCCGGGCTCCTGGTGGATCTTTCGATGCTAGATCGTTGTATGTTCAACTT
CATGCCTGGCACACTCGCAGCTGCTGCTCTGTTTCTGGCTCGCGTAACGG
CTTTTTTCTATTCCAAGGAATGTGTCTTGGCCGGGCTCCTGGTGGATCTT
TCGATGCTAGATCGTTGTATGTTCAACTTCATGCCTGGCACACTCGCAGC
TGCTGCTCTGTTTCTGGCTCGCGTAACGGCTTTTTTCTATTCCAAGGAAG
AAGTTATCGTAACGCCTCACGCTGTGGTGGAGAAGAACAACCGTGAGGTG
CTGAGGTTGTTCGACCAAGGCGTGTGCAGGAAGAAGTTATCGTAACGCCT
CACGCTGTGGTGGAGAAGAACAACCGTGAGGTGCTGAGGTTGTTCGACCA
AGGCGTGTGCAGGCCTTTCGTACCGATGGATGAGTCTTTCGAGAAGCGGC
CGTTCGGCGCCCCAGGACTTGGAGAATTCGTCGCGAGCCAGCCACGAGAA
GCAGAGGCCTTTCGTACCGATGGATGAGTCTTTCGAGAAGCGGCCGTTCG
GCGCCCCAGGACTTGGAGAATTCGTCGCGAGCCAGCCACGAGAAGCAGAG
GCCGTCCGAAAGTGTGTGGATCGGCTGTGGCTCGTCCAGCAAGACTTCTT
GCTTCACATGGCGGGTGAGACTCCCACTCGCCCGGTGCTCTTCCGCTACC
AGCACATGTTCAAAGGAATAAAGGCCGTCCGAAAGTGTGTGGATCGGCTG
TGGCTCGTCCAGCAAGACTTCTTGCTTCACATGGCGGGTGAGACTCCCAC
TCGCCCGGTGCTCTTCCGCTACCAGCACATGTTCAAAGGAATAAAGGACA
AATTCGTCCCGCCGAACTCGCGGAGGCTTCAAGCCTGGCTGCGCCTGGGC
GTGGTCCATAAGAACGAGCTCGACGCCCTGCTCGATAAACATCTTCCAGT
CGCAGAAATCGTGGTACCTCGCGTACCTACGTCAGTGGCCGGTATTGGTG
GGATGGTCGCAGTGACGGCACCTTCGGGGGGGGGGCAGGAGGCGACGGCA
CTCAACCACTCAAAGAGAGTGTCACCCCATTCCACCTCGGCAGCGGCAGG
AGCAGCAGAGGGAGCAGGCTCCTTTCCTTTTTCTGATTAAGACAAATTCG
TCCCGCCGAACTCGCGGAGGCTTCAAGCCTGGCTGCGCCTGGGCGTGGTC
CATAAGAACGAGCTCGACGCCCTGCTCGATAAACATCTTCCAGTCGCAGA
AATCGTGGTACCTCGCGTACCTACGTCAGTGGCCGGTATTGGTGGGATGG
TCGCAGTGACGGCACCTTCGGGGGGGGGGCAGGAGGCGACGGCACTCAAC
CACTCAAAGAGAGTGTCACCCCATTCCACCTCGGCAGCGGCAGGAGCAGC
AGAGGGAGCAGGCTCCTTTCCTTTTTCTGATTAA back to top
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