mRNA_H-paniculata_contig14982.2960.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14982.2960.1
Unique NamemRNA_H-paniculata_contig14982.2960.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig14982.2960.1 vs. uniprot
Match: D7G356_ECTSI (Sporulation-specific protein 11 homologue n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G356_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 1.460e-52
Identity = 84/112 (75.00%), Postives = 95/112 (84.82%), Query Frame = 1
Query:   25 QGFEDWQNPSSTGGTSGLAINADWLTRTLELRSDARYIIVVEKDGVFNRMVEDGFHDR-----------VPSVLVTGQGFPPLAVRACVYRLAEALKLPVLGLLDCNPFGTN 327
            +GFEDWQ+P STGG+SGLAI +DWLTR LEL+SDAR ++VVEKDGVFNRMVEDGF+DR           +PSVLVTGQGFPPLAVRACVYRLAEAL LPVLGL+DCNPFG +
Sbjct:   70 EGFEDWQDPRSTGGSSGLAITSDWLTRPLELKSDARIVLVVEKDGVFNRMVEDGFYDRANVSTLHYLRRIPSVLVTGQGFPPLAVRACVYRLAEALDLPVLGLVDCNPFGLS 181          
BLAST of mRNA_H-paniculata_contig14982.2960.1 vs. uniprot
Match: A0A6H5KRW2_9PHAE (TP6A_N domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRW2_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 6.920e-49
Identity = 78/101 (77.23%), Postives = 88/101 (87.13%), Query Frame = 1
Query:   25 QGFEDWQNPSSTGGTSGLAINADWLTRTLELRSDARYIIVVEKDGVFNRMVEDGFHDRVPSVLVTGQGFPPLAVRACVYRLAEALKLPVLGLLDCNPFGTN 327
            +GF+DWQ+P STGG+SGLAI +DWLTR LEL+SDAR I+VVEKDGVFNRMVEDGF D      +TGQGFPPLAVRACVYRLAEAL LPVLGL+DCNPFG +
Sbjct:   70 EGFQDWQDPRSTGGSSGLAITSDWLTRPLELKSDARIILVVEKDGVFNRMVEDGFCD------ITGQGFPPLAVRACVYRLAEALDLPVLGLVDCNPFGLS 164          
BLAST of mRNA_H-paniculata_contig14982.2960.1 vs. uniprot
Match: A0A836CJS5_9STRA (Spo11/DNA topoisomerase VI subunit A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJS5_9STRA)

HSP 1 Score: 125 bits (313), Expect = 4.070e-33
Identity = 54/97 (55.67%), Postives = 73/97 (75.26%), Query Frame = 1
Query:   37 DWQNPSSTGGTSGLAINADWLTRTLELRSDARYIIVVEKDGVFNRMVEDGFHDRVPSVLVTGQGFPPLAVRACVYRLAEALKLPVLGLLDCNPFGTN 327
            DW +P + GGT G ++N+DW++  LE  SDA++++VVEKDG F R+ ED F+DR+P ++VTGQGFPP+AVRA V  L  AL LP  GL+DC PFG +
Sbjct:   88 DWHDPRTAGGT-GASVNSDWISHALEAESDAQFLLVVEKDGAFARLSEDRFYDRLPCIIVTGQGFPPVAVRAMVRALQSALNLPAYGLVDCGPFGLS 183          
BLAST of mRNA_H-paniculata_contig14982.2960.1 vs. uniprot
Match: A0A6A3F4G6_9STRA (TP6A_N domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3F4G6_9STRA)

HSP 1 Score: 102 bits (255), Expect = 8.150e-24
Identity = 44/72 (61.11%), Postives = 60/72 (83.33%), Query Frame = 1
Query:  112 ELRSDARYIIVVEKDGVFNRMVEDGFHDRVPSVLVTGQGFPPLAVRACVYRLAEALKLPVLGLLDCNPFGTN 327
            +++S+A+YI+VVEKDG+FNR+ ED F++ VPS+L+TG+GFP LA R  V  L+ ALK+PVLGL DCNPFG +
Sbjct:  183 DVQSNAKYIVVVEKDGIFNRLREDKFYEMVPSILITGRGFPDLATRVFVSLLSHALKIPVLGLCDCNPFGLS 254          
BLAST of mRNA_H-paniculata_contig14982.2960.1 vs. uniprot
Match: A0A067D4V8_SAPPC (TP6A_N domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D4V8_SAPPC)

HSP 1 Score: 101 bits (251), Expect = 3.150e-23
Identity = 51/92 (55.43%), Postives = 66/92 (71.74%), Query Frame = 1
Query:   55 STGGTSGLAINADWLTRTLE-LRSDARYIIVVEKDGVFNRMVEDGFHDRVPSVLVTGQGFPPLAVRACVYRLAEALKLPVLGLLDCNPFGTN 327
            S  G SG  I+ + L    E + SDA+YIIVVEK+G+FNR+ ED F +RVP +LVTG+GFP LA R  V +L + L++PVLGL DCNPFG +
Sbjct:  165 SLDGASGRPISRELLRLESEDMISDAQYIIVVEKEGIFNRLGEDLFFNRVPCILVTGKGFPDLATRIFVKKLRDTLRVPVLGLCDCNPFGLS 256          
BLAST of mRNA_H-paniculata_contig14982.2960.1 vs. uniprot
Match: A0A0P1AB95_PLAHL (Type ii dna topoisomerase vi subunit a 2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AB95_PLAHL)

HSP 1 Score: 100 bits (250), Expect = 3.690e-23
Identity = 45/72 (62.50%), Postives = 59/72 (81.94%), Query Frame = 1
Query:  112 ELRSDARYIIVVEKDGVFNRMVEDGFHDRVPSVLVTGQGFPPLAVRACVYRLAEALKLPVLGLLDCNPFGTN 327
            ELRS+A+ I+V+EKDG+FNR+ ED F D VPS+LVTG+GFP LA R  V  L++AL++PVLG+ DCNPFG +
Sbjct:  171 ELRSNAKIILVIEKDGIFNRLREDKFFDVVPSILVTGKGFPDLATRVFVSLLSKALRIPVLGVCDCNPFGLS 242          
BLAST of mRNA_H-paniculata_contig14982.2960.1 vs. uniprot
Match: A0A1V9YKA4_9STRA (TP6A_N domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YKA4_9STRA)

HSP 1 Score: 100 bits (250), Expect = 4.380e-23
Identity = 53/104 (50.96%), Postives = 73/104 (70.19%), Query Frame = 1
Query:   40 WQNPSSTGGTSGLAINADWL---TRTLEL-----RSDARYIIVVEKDGVFNRMVEDGFHDRVPSVLVTGQGFPPLAVRACVYRLAEALKLPVLGLLDCNPFGTN 327
            W + S  GGT G  I+ D L   +  +++      SDA+Y+IVVEK+G+FNR+ ED F +RVP +LVTG+GFP LA R  V +L++AL++PVLGL DCNPFG +
Sbjct:  156 WIDCSQDGGT-GRPISRDILRLESHQMQIFGVFNLSDAKYVIVVEKEGIFNRLGEDLFFNRVPCILVTGKGFPDLATRIFVKKLSDALRVPVLGLCDCNPFGLS 258          
BLAST of mRNA_H-paniculata_contig14982.2960.1 vs. uniprot
Match: A0A1W0A8B8_9STRA (TP6A_N domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A8B8_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.450e-22
Identity = 48/89 (53.93%), Postives = 63/89 (70.79%), Query Frame = 1
Query:   64 GTSGLAINADWLT-RTLELRSDARYIIVVEKDGVFNRMVEDGFHDRVPSVLVTGQGFPPLAVRACVYRLAEALKLPVLGLLDCNPFGTN 327
            G +G  I  D L  R  ++ SDA+YIIV+EKDG+FNR+ ED F   +PS+LVTG+GFP LA R  V +L+E  ++PVL L DCNPFG +
Sbjct:  159 GPTGRPITQDILRLRDDQITSDAQYIIVIEKDGIFNRLGEDQFFHNIPSILVTGRGFPDLATRVFVKKLSERFQIPVLCLCDCNPFGLS 247          
BLAST of mRNA_H-paniculata_contig14982.2960.1 vs. uniprot
Match: A0A485L555_9STRA (Aste57867_16293 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L555_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 6.470e-22
Identity = 46/89 (51.69%), Postives = 62/89 (69.66%), Query Frame = 1
Query:   64 GTSGLAINADWLTRTLE-LRSDARYIIVVEKDGVFNRMVEDGFHDRVPSVLVTGQGFPPLAVRACVYRLAEALKLPVLGLLDCNPFGTN 327
            G +G  I  + L    E + SDA +I+V+EKDG+FNR+ ED F D +P +LVTG+GFP LA R  V +L++ L +PVLGL DCNPFG +
Sbjct:  121 GPTGRPITRETLRLQPEQITSDANFILVIEKDGIFNRLSEDCFFDTMPCILVTGKGFPDLATRCFVRKLSDCLGIPVLGLCDCNPFGLS 209          
BLAST of mRNA_H-paniculata_contig14982.2960.1 vs. uniprot
Match: UPI0007114B24 (hypothetical protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI0007114B24)

HSP 1 Score: 92.8 bits (229), Expect = 3.180e-21
Identity = 41/82 (50.00%), Postives = 62/82 (75.61%), Query Frame = 1
Query:   76 LAINADWLTRTLELRSDARYIIVVEKDGVFNRMVEDGFHDRVPSVLVTGQGFPPLAVRACVYRLAEALKLPVLGLLDCNPFG 321
            L+I  + +T+ L +RSDA++I+V+EK+G+F R+ ED F D +P +++TG+GFP LA RA  + L+  L+LPVLGL D NP+G
Sbjct:   80 LSITYEMITK-LSVRSDAQFILVIEKEGIFKRLYEDKFFDDMPCIMITGRGFPDLATRALTHFLSVTLRLPVLGLCDWNPYG 160          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14982.2960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G356_ECTSI1.460e-5275.00Sporulation-specific protein 11 homologue n=1 Tax=... [more]
A0A6H5KRW2_9PHAE6.920e-4977.23TP6A_N domain-containing protein (Fragment) n=1 Ta... [more]
A0A836CJS5_9STRA4.070e-3355.67Spo11/DNA topoisomerase VI subunit A n=1 Tax=Tribo... [more]
A0A6A3F4G6_9STRA8.150e-2461.11TP6A_N domain-containing protein n=2 Tax=Phytophth... [more]
A0A067D4V8_SAPPC3.150e-2355.43TP6A_N domain-containing protein n=2 Tax=Saprolegn... [more]
A0A0P1AB95_PLAHL3.690e-2362.50Type ii dna topoisomerase vi subunit a 2 n=1 Tax=P... [more]
A0A1V9YKA4_9STRA4.380e-2350.96TP6A_N domain-containing protein n=1 Tax=Achlya hy... [more]
A0A1W0A8B8_9STRA1.450e-2253.93TP6A_N domain-containing protein n=1 Tax=Thraustot... [more]
A0A485L555_9STRA6.470e-2251.69Aste57867_16293 protein n=1 Tax=Aphanomyces stella... [more]
UPI0007114B243.180e-2150.00hypothetical protein n=1 Tax=Blastocystis sp. subt... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14982contigH-paniculata_contig14982:2672..3296 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score178.3
Seed ortholog evalue1.9e-42
Seed eggNOG ortholog2880.D7G356
KEGG koko:K10878
KEGG Pathwayko04113,map04113
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DNA topoisomerase VI subunit A
EggNOG OGsCOG1697@1,KOG2795@2759
Ec32 ortholog descriptionSporulation-specific protein 11 homologue
Ec32 orthologEc-03_004560.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Exons2
Model size333
Cds size333
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929197.7693844-CDS-H-paniculata_contig14982:2671..28071622929197.7693844-CDS-H-paniculata_contig14982:2671..2807Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14982 2672..2807 -
1691480766.7968404-CDS-H-paniculata_contig14982:2671..28071691480766.7968404-CDS-H-paniculata_contig14982:2671..2807Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14982 2672..2807 -
1622929197.7812197-CDS-H-paniculata_contig14982:3099..32961622929197.7812197-CDS-H-paniculata_contig14982:3099..3296Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14982 3100..3296 -
1691480766.8096275-CDS-H-paniculata_contig14982:3099..32961691480766.8096275-CDS-H-paniculata_contig14982:3099..3296Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14982 3100..3296 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14982.2960.1prot_H-paniculata_contig14982.2960.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14982 2672..3296 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14982.2960.1

>prot_H-paniculata_contig14982.2960.1 ID=prot_H-paniculata_contig14982.2960.1|Name=mRNA_H-paniculata_contig14982.2960.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
MLTQTTNVQGFEDWQNPSSTGGTSGLAINADWLTRTLELRSDARYIIVVE
KDGVFNRMVEDGFHDRVPSVLVTGQGFPPLAVRACVYRLAEALKLPVLGL
LDCNPFGTNH*
back to top

mRNA from alignment at H-paniculata_contig14982:2672..3296-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14982.2960.1 ID=mRNA_H-paniculata_contig14982.2960.1|Name=mRNA_H-paniculata_contig14982.2960.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=625bp|location=Sequence derived from alignment at H-paniculata_contig14982:2672..3296- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGACCCAAACGACGAATGTTCAGGGGTTTGAGGATTGGCAAAACCC CAGTTCTACCGGCGGTACGTCCGGCTTGGCCATCAACGCCGATTGGCTGA CTCGCACGCTTGAGCTAAGATCTGATGCCCGATACATCATCGTGGTGGAA AAGGACGGGGTATTCAACCGCATGGTTGAAGATGGCTTCCACGACAGGTT ATGTCAGAGGTGTACCTAAACACCGAAATTCGTACCGTGTTGTGAATATA GGTATAGGAGGGGTTAGCGACGCAAAAGCTGTCTTACAAATCTGAAGAGT CTAGTCTTCAGTCGAGCTCTGTTTGGGTGCTGATACACAAAGTAGAGAGT TGTAGGCTTCGCAACGTCTGAATATCACTATCAAAGCTAGAGTCTAATGC CAACAGGGTACCGCCCGTGCGCTCGCCCTTGTTCTCGGGGGTATGCCACG CGTTTTTCTCCTTGCTTACGATGTCAACATCCCGCACAGAGTCCCCTCCG TTCTCGTGACTGGCCAAGGATTTCCTCCGCTCGCGGTTCGCGCATGCGTC TATCGGCTTGCTGAAGCGCTGAAGCTCCCAGTTCTAGGCCTTTTGGACTG CAACCCCTTCGGTACAAACCATTAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig14982:2672..3296-

>mRNA_H-paniculata_contig14982.2960.1 ID=mRNA_H-paniculata_contig14982.2960.1|Name=mRNA_H-paniculata_contig14982.2960.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig14982:2672..3296- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGACCCAAACGACGAATGTTCAGGGGTTTGAGGATTGGCAAAACCC
CAGTTCTACCGGCGGTACGTCCGGCTTGGCCATCAACGCCGATTGGCTGA
CTCGCACGCTTGAGCTAAGATCTGATGCCCGATACATCATCGTGGTGGAA
AAGGACGGGGTATTCAACCGCATGGTTGAAGATGGCTTCCACGACAGATG
TTGACCCAAACGACGAATGTTCAGGGGTTTGAGGATTGGCAAAACCCCAG
TTCTACCGGCGGTACGTCCGGCTTGGCCATCAACGCCGATTGGCTGACTC
GCACGCTTGAGCTAAGATCTGATGCCCGATACATCATCGTGGTGGAAAAG
GACGGGGTATTCAACCGCATGGTTGAAGATGGCTTCCACGACAGAGTCCC
CTCCGTTCTCGTGACTGGCCAAGGATTTCCTCCGCTCGCGGTTCGCGCAT
GCGTCTATCGGCTTGCTGAAGCGCTGAAGCTCCCAGTTCTAGGCCTTTTG
GACTGCAACCCCTTCGGTACAAACCATTAGAGTCCCCTCCGTTCTCGTGA
CTGGCCAAGGATTTCCTCCGCTCGCGGTTCGCGCATGCGTCTATCGGCTT
GCTGAAGCGCTGAAGCTCCCAGTTCTAGGCCTTTTGGACTGCAACCCCTT
CGGTACAAACCATTAG
back to top