mRNA_H-paniculata_contig14982.2959.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14982.2959.1
Unique NamemRNA_H-paniculata_contig14982.2959.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14982.2959.1 vs. uniprot
Match: D7G356_ECTSI (Sporulation-specific protein 11 homologue n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G356_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 2.190e-22
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:    1 VLGLLDCNPFGLSVLLQYKLGSTRQGPGSAKYAVPDLKWVGLRPSQLDDLDLP 159
            VLGL+DCNPFGLSV LQYK GS+RQG GSAK+ VP++KWVGLRPSQLDDLDLP
Sbjct:  169 VLGLVDCNPFGLSVFLQYKEGSSRQGRGSAKFGVPEMKWVGLRPSQLDDLDLP 221
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BLAST of mRNA_H-paniculata_contig14982.2959.1 vs. uniprot
Match: A0A6H5KRW2_9PHAE (TP6A_N domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRW2_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 2.740e-22
Identity = 43/53 (81.13%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:    1 VLGLLDCNPFGLSVLLQYKLGSTRQGPGSAKYAVPDLKWVGLRPSQLDDLDLP 159
            VLGL+DCNPFGLSV LQYK GS++QG GSAK+ VP++KWVGLRPSQLDDLDLP
Sbjct:  152 VLGLVDCNPFGLSVFLQYKEGSSKQGRGSAKFRVPEMKWVGLRPSQLDDLDLP 204
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BLAST of mRNA_H-paniculata_contig14982.2959.1 vs. uniprot
Match: W2KQB5_PHYPR (TP6A_N domain-containing protein n=2 Tax=Phytophthora parasitica TaxID=4792 RepID=W2KQB5_PHYPR)

HSP 1 Score: 76.6 bits (187), Expect = 4.640e-15
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 VLGLLDCNPFGLSVLLQYKLGSTRQGPGSAKYAVPDLKWVGLRPSQLDDLDLPL 162
            VLGL DCNPFGLS++L YKLGS R    S +YAV D+KWVG+RPSQ+ DLDLP+
Sbjct:  274 VLGLCDCNPFGLSIMLTYKLGSARMPLESLQYAV-DIKWVGVRPSQIADLDLPI 326
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BLAST of mRNA_H-paniculata_contig14982.2959.1 vs. uniprot
Match: W2PU68_PHYPN (Apple domain-containing protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PU68_PHYPN)

HSP 1 Score: 76.6 bits (187), Expect = 5.400e-15
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 VLGLLDCNPFGLSVLLQYKLGSTRQGPGSAKYAVPDLKWVGLRPSQLDDLDLPL 162
            VLGL DCNPFGLS++L YKLGS R    S +YAV D+KWVG+RPSQ+ DLDLP+
Sbjct:  398 VLGLCDCNPFGLSIMLTYKLGSARMPLESLQYAV-DIKWVGVRPSQIADLDLPI 450
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BLAST of mRNA_H-paniculata_contig14982.2959.1 vs. uniprot
Match: D0MT30_PHYIT (TP6A_N domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MT30_PHYIT)

HSP 1 Score: 71.6 bits (174), Expect = 2.470e-13
Identity = 35/53 (66.04%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 VLGLLDCNPFGLSVLLQYKLGSTRQGPGSAKYAVPDLKWVGLRPSQLDDLDLP 159
            VLGL DCNPFGLS++L YKLGS R    S +YAV D+KWVG+RPSQ+  L LP
Sbjct:  225 VLGLCDCNPFGLSIMLTYKLGSARMPLDSLRYAV-DIKWVGVRPSQVSHLGLP 276
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BLAST of mRNA_H-paniculata_contig14982.2959.1 vs. uniprot
Match: A0A2P4X7X3_9STRA (Topoisomerase acting in meiosis n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X7X3_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 9.620e-13
Identity = 34/53 (64.15%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 VLGLLDCNPFGLSVLLQYKLGSTRQGPGSAKYAVPDLKWVGLRPSQLDDLDLP 159
            VLG+ DCNPFGLS++L YKLGS R    S +YAV D+KWVG+RPSQ+  L LP
Sbjct:  179 VLGICDCNPFGLSIMLTYKLGSARMPLESLQYAV-DIKWVGVRPSQIAGLGLP 230
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BLAST of mRNA_H-paniculata_contig14982.2959.1 vs. uniprot
Match: G4ZQQ3_PHYSP (TP6A_N domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZQQ3_PHYSP)

HSP 1 Score: 70.1 bits (170), Expect = 9.740e-13
Identity = 35/53 (66.04%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 VLGLLDCNPFGLSVLLQYKLGSTRQGPGSAKYAVPDLKWVGLRPSQLDDLDLP 159
            VLGL DCNPFGLS++L YKLGS R    S +YAV D+KWVG+RPSQ+  L LP
Sbjct:  252 VLGLCDCNPFGLSIMLTYKLGSARMPLESLEYAV-DIKWVGVRPSQIAALGLP 303
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BLAST of mRNA_H-paniculata_contig14982.2959.1 vs. uniprot
Match: A0A329SU04_9STRA (TP6A_N domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SU04_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.000e-12
Identity = 35/53 (66.04%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 VLGLLDCNPFGLSVLLQYKLGSTRQGPGSAKYAVPDLKWVGLRPSQLDDLDLP 159
            VLGL DCNPFGLS++L YKLGS R    S +YAV D+KWVG+RPSQ+  L LP
Sbjct:  265 VLGLCDCNPFGLSIMLTYKLGSARMPLESLQYAV-DIKWVGVRPSQVAGLGLP 316
[Close]
BLAST of mRNA_H-paniculata_contig14982.2959.1 vs. uniprot
Match: A0A6A3F4G6_9STRA (TP6A_N domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3F4G6_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.300e-12
Identity = 34/53 (64.15%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 VLGLLDCNPFGLSVLLQYKLGSTRQGPGSAKYAVPDLKWVGLRPSQLDDLDLP 159
            VLGL DCNPFGLS++L YKLGS R    S +YAV D+KW+G+RPSQ+  L LP
Sbjct:  242 VLGLCDCNPFGLSIMLTYKLGSARMPLESLEYAV-DIKWIGVRPSQVATLGLP 293
[Close]
BLAST of mRNA_H-paniculata_contig14982.2959.1 vs. uniprot
Match: A0A0P1AB95_PLAHL (Type ii dna topoisomerase vi subunit a 2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AB95_PLAHL)

HSP 1 Score: 69.3 bits (168), Expect = 1.720e-12
Identity = 32/53 (60.38%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    1 VLGLLDCNPFGLSVLLQYKLGSTRQGPGSAKYAVPDLKWVGLRPSQLDDLDLP 159
            VLG+ DCNPFGLS++L YKLGS R    S +YAV D+KW+G+RPSQ+ ++ LP
Sbjct:  230 VLGVCDCNPFGLSIILTYKLGSARMPLESLQYAV-DIKWIGVRPSQISNIALP 281
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14982.2959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G356_ECTSI2.190e-2283.02Sporulation-specific protein 11 homologue n=1 Tax=... [more]
A0A6H5KRW2_9PHAE2.740e-2281.13TP6A_N domain-containing protein (Fragment) n=1 Ta... [more]
W2KQB5_PHYPR4.640e-1568.52TP6A_N domain-containing protein n=2 Tax=Phytophth... [more]
W2PU68_PHYPN5.400e-1568.52Apple domain-containing protein n=6 Tax=Phytophtho... [more]
D0MT30_PHYIT2.470e-1366.04TP6A_N domain-containing protein n=2 Tax=Phytophth... [more]
A0A2P4X7X3_9STRA9.620e-1364.15Topoisomerase acting in meiosis n=2 Tax=Phytophtho... [more]
G4ZQQ3_PHYSP9.740e-1366.04TP6A_N domain-containing protein n=1 Tax=Phytophth... [more]
A0A329SU04_9STRA1.000e-1266.04TP6A_N domain-containing protein n=1 Tax=Phytophth... [more]
A0A6A3F4G6_9STRA1.300e-1264.15TP6A_N domain-containing protein n=2 Tax=Phytophth... [more]
A0A0P1AB95_PLAHL1.720e-1260.38Type ii dna topoisomerase vi subunit a 2 n=1 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14982contigH-paniculata_contig14982:2095..2716 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue4.8e-18
Seed eggNOG ortholog2880.D7G356
KEGG koko:K10878
KEGG Pathwayko04113,map04113
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.DNA topoisomerase VI subunit A
EggNOG OGsCOG1697@1,KOG2795@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Exons2
Model size168
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929197.7023664-CDS-H-paniculata_contig14982:2096..22301622929197.7023664-CDS-H-paniculata_contig14982:2096..2230Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14982 2097..2230 -
1691480766.7712822-CDS-H-paniculata_contig14982:2096..22301691480766.7712822-CDS-H-paniculata_contig14982:2096..2230Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14982 2097..2230 -
1622929197.7171443-CDS-H-paniculata_contig14982:2685..27161622929197.7171443-CDS-H-paniculata_contig14982:2685..2716Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14982 2686..2716 -
1691480766.7843623-CDS-H-paniculata_contig14982:2685..27161691480766.7843623-CDS-H-paniculata_contig14982:2685..2716Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14982 2686..2716 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14982.2959.1prot_H-paniculata_contig14982.2959.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14982 2097..2716 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14982.2959.1

>prot_H-paniculata_contig14982.2959.1 ID=prot_H-paniculata_contig14982.2959.1|Name=mRNA_H-paniculata_contig14982.2959.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
VLGLLDCNPFGLSVLLQYKLGSTRQGPGSAKYAVPDLKWVGLRPSQLDDL
DLPLQ
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mRNA from alignment at H-paniculata_contig14982:2095..2716-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14982.2959.1 ID=mRNA_H-paniculata_contig14982.2959.1|Name=mRNA_H-paniculata_contig14982.2959.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=622bp|location=Sequence derived from alignment at H-paniculata_contig14982:2095..2716- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCTAGGCCTTTTGGACTGCAACCCCTTCGGTACAAACCATTAGTGTAG
TGAAATATAACCGCTTTCCTCTTTGATTCGTTTGGCGACATAGGGCAGGT
TCGTAACAAAAGGTGACTCGATGCCAACATCTCGTACCGAACACAAGATA
ATCGTGCCGTAGAAACGTTTAATTTGCAAGTCAGATAGTGTAATGTACTA
GGCACCACAAACGCGAACAATCTCAGTTGCTGGTACTATCGTGCCAGCAG
AGCAGTCTTACCAAAGCAAGGCTTTATGAAGGTAATACCTGCAGGCGCTT
GGTTCCCCCCCTCGCTTTGCTCCGCCCAAGAGCTACTCTATAATACTGTC
TCACGTTGGCTACGCCAACGTTTCTACCATCATGAGTTCATGCACCCCTT
CTAGTACCCTCGGGAGGCATTTCACCAAGCCCAAGCGCGCTCCCACAGCT
CACGTTATCATGCCTCCCAACCTTTGGATGGAGCAGGGCTAAGCGTGTTG
CTACAGTACAAGCTGGGATCGACTCGGCAAGGGCCTGGCTCTGCAAAGTA
TGCGGTACCGGATTTGAAGTGGGTGGGGCTACGGCCGAGTCAGCTCGATG
ACCTTGACCTTCCCTTACAGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig14982:2095..2716-

>mRNA_H-paniculata_contig14982.2959.1 ID=mRNA_H-paniculata_contig14982.2959.1|Name=mRNA_H-paniculata_contig14982.2959.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig14982:2095..2716- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCTAGGCCTTTTGGACTGCAACCCCTTCGGTTCTAGGCCTTTTGGACT
GCAACCCCTTCGGGCTAAGCGTGTTGCTACAGTACAAGCTGGGATCGACT
CGGCAAGGGCCTGGCTCTGCAAAGTATGCGGTACCGGATTTGAAGTGGGT
GGGGCTACGGCCGAGTCAGCTCGATGACCTTGACCTTCCCTTACAGGGCT
AAGCGTGTTGCTACAGTACAAGCTGGGATCGACTCGGCAAGGGCCTGGCT
CTGCAAAGTATGCGGTACCGGATTTGAAGTGGGTGGGGCTACGGCCGAGT
CAGCTCGATGACCTTGACCTTCCCTTACAG
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