mRNA_H-paniculata_contig14982.2958.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14982.2958.1
Unique NamemRNA_H-paniculata_contig14982.2958.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14982.2958.1 vs. uniprot
Match: D7G356_ECTSI (Sporulation-specific protein 11 homologue n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G356_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.340e-19
Identity = 40/55 (72.73%), Postives = 50/55 (90.91%), Query Frame = 1 
Query:    1 GLRPSQLDDLDLPLQVHQSLSVLDLARARSLGSSTLVTDNPDTFGDEVAYWLETD 165
            GLRPSQLDDLDLP +VHQ+LS  DL+RA+S+ +STLVTDNPDT+G+EV YWL+T+
Sbjct:  209 GLRPSQLDDLDLPDEVHQTLSQQDLSRAQSVANSTLVTDNPDTYGEEVEYWLDTE 263
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BLAST of mRNA_H-paniculata_contig14982.2958.1 vs. uniprot
Match: A0A6H5KRW2_9PHAE (TP6A_N domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRW2_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.540e-17
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    1 GLRPSQLDDLDLP--------LQVHQSLSVLDLARARSLGSSTLVTDNPDTFGDEVAYWLETD 165
            GLRPSQLDDLDLP         +VHQ+LS  DLARA+S+ +STLVTDNPDT+G+E  YWL+T+
Sbjct:  192 GLRPSQLDDLDLPEEASKKIITEVHQTLSQQDLARAQSVANSTLVTDNPDTYGEEAEYWLDTE 254
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14982.2958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G356_ECTSI1.340e-1972.73Sporulation-specific protein 11 homologue n=1 Tax=... [more]
A0A6H5KRW2_9PHAE1.540e-1763.49TP6A_N domain-containing protein (Fragment) n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14982contigH-paniculata_contig14982:1674..2141 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.0
Seed ortholog evalue9e-16
Seed eggNOG ortholog2880.D7G356
KEGG koko:K10878
KEGG Pathwayko04113,map04113
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DNA topoisomerase VI subunit A
EggNOG OGsCOG1697@1,KOG2795@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Exons2
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929197.641772-CDS-H-paniculata_contig14982:1673..18231622929197.641772-CDS-H-paniculata_contig14982:1673..1823Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14982 1674..1823 -
1691480766.7510145-CDS-H-paniculata_contig14982:1673..18231691480766.7510145-CDS-H-paniculata_contig14982:1673..1823Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14982 1674..1823 -
1622929197.6552885-CDS-H-paniculata_contig14982:2096..21411622929197.6552885-CDS-H-paniculata_contig14982:2096..2141Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14982 2097..2141 -
1691480766.761465-CDS-H-paniculata_contig14982:2096..21411691480766.761465-CDS-H-paniculata_contig14982:2096..2141Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14982 2097..2141 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14982.2958.1prot_H-paniculata_contig14982.2958.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14982 1674..2141 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14982.2958.1

>prot_H-paniculata_contig14982.2958.1 ID=prot_H-paniculata_contig14982.2958.1|Name=mRNA_H-paniculata_contig14982.2958.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
GLRPSQLDDLDLPLQVHQSLSVLDLARARSLGSSTLVTDNPDTFGDEVAY
WLETDGKEGRKSHAD
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mRNA from alignment at H-paniculata_contig14982:1674..2141-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14982.2958.1 ID=mRNA_H-paniculata_contig14982.2958.1|Name=mRNA_H-paniculata_contig14982.2958.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=468bp|location=Sequence derived from alignment at H-paniculata_contig14982:1674..2141- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCTACGGCCGAGTCAGCTCGATGACCTTGACCTTCCCTTACAGGTTGA
TTTCATCAATCAGTTGAAGCGTGGTTGTAGATTTTGCGGCTTTGATCCTT
TCTCCGTAGAGTCGTTTTCACAGGGTGGACAAGGGCTTGCGGTCACTATG
GACAATTGTTCTAAGAATTGGCTGGAGTTTATGTTGTGCAGCTGAATGGG
TATGACCTAGACCACTCGTCAACCCAAAACTCCACTAAATCCGCAAAAAT
GCCGTTGCACTGTTTTCGGTTATGAAATGTTCATAAGAGCTTCCTCCCTG
TACGCGTGTATGGTTCAGGTGCACCAGAGTCTCTCGGTCCTGGATTTGGC
AAGGGCACGATCATTGGGAAGTTCTACACTAGTCACGGATAATCCCGATA
CATTCGGAGACGAGGTTGCCTATTGGCTTGAAACGGATGGCAAAGAAGGT
AGGAAATCACACGCAGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig14982:1674..2141-

>mRNA_H-paniculata_contig14982.2958.1 ID=mRNA_H-paniculata_contig14982.2958.1|Name=mRNA_H-paniculata_contig14982.2958.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig14982:1674..2141- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCTACGGCCGAGTCAGCTCGATGACCTTGACCTTCCCTTACAGGGGCT
ACGGCCGAGTCAGCTCGATGACCTTGACCTTCCCTTACAGGTGCACCAGA
GTCTCTCGGTCCTGGATTTGGCAAGGGCACGATCATTGGGAAGTTCTACA
CTAGTCACGGATAATCCCGATACATTCGGAGACGAGGTTGCCTATTGGCT
TGAAACGGATGGCAAAGAAGGTAGGAAATCACACGCAGACGTGCACCAGA
GTCTCTCGGTCCTGGATTTGGCAAGGGCACGATCATTGGGAAGTTCTACA
CTAGTCACGGATAATCCCGATACATTCGGAGACGAGGTTGCCTATTGGCT
TGAAACGGATGGCAAAGAAGGTAGGAAATCACACGCAGAC
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