mRNA_H-paniculata_contig14978.2956.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14978.2956.1
Unique NamemRNA_H-paniculata_contig14978.2956.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig14978.2956.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 4.080e-20
Identity = 58/136 (42.65%), Postives = 77/136 (56.62%), Query Frame = 1 
Query:    1 EADLVQIIASPYTEDLCGLGYVFDGSDEYGFSIIEPTCIDSLSSQVHEIGHNLGCLHDRDSHVTADQKPYAHATKYCDDDSLAYRTMMSTQCRYPN-----------ETVAKANLFSNPNVVHLGQATGTETENNA 375
            + DLVQ++   Y    CGLGY+F+G+ E+GFS++   C D+ S   HEI HN+GC HDRD+  T D+  Y H  +YC   S  YRT+MS    Y N             V + N FSNP V +L + TGT T +NA
Sbjct:  444 QGDLVQLVG--YFPGTCGLGYIFNGNAEFGFSLVGSNCFDNFS-HTHEIAHNMGCYHDRDNSETQDE--YRHGYRYC-TGSDPYRTIMSY---YQNGCGGDPTPEADPIVPQVNYFSNPEVTYLNKPTGTATADNA 570
[Close]
BLAST of mRNA_H-paniculata_contig14978.2956.1 vs. uniprot
Match: D8LMP2_ECTSI (Peptidyl-Asp metallopeptidase. metallo peptidase. MEROPS family M72 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP2_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 3.120e-12
Identity = 35/77 (45.45%), Postives = 48/77 (62.34%), Query Frame = 1 
Query:    1 EADLVQIIASPYTEDLCGLGYVFDGSDEYGFSIIEPTCIDSLSSQVHEIGHNLGCLHDRDSHVTADQKPYAHATKYC 231
            + DLVQ++   Y    CGLGYVF+G+ EYGFS++   C D+ S   HEI HN+GC HDR +  +  Q  + H  +YC
Sbjct:  103 QGDLVQLVG--YFPGTCGLGYVFNGNAEYGFSLVGSNCFDNFS-HTHEIAHNMGCYHDRLN--SGPQDAFRHGYRYC 174
[Close]
BLAST of mRNA_H-paniculata_contig14978.2956.1 vs. uniprot
Match: A0A3M8FRP0_9BACT (Ig-like domain-containing protein n=1 Tax=Phycisphaera sp. TaxID=2030824 RepID=A0A3M8FRP0_9BACT)

HSP 1 Score: 71.6 bits (174), Expect = 3.290e-10
Identity = 43/132 (32.58%), Postives = 69/132 (52.27%), Query Frame = 1 
Query:    4 ADLVQIIASPYTEDLCGLGYVFDGSDEYGFSIIEPTCIDSLSSQVHEIGHNLGCLHDRDSHVTADQKPYAHATKYCDDDSLAYRTMMSTQCRYPNETVAKANLFSNPNVVHLGQATGTETENNAPPSTRVLE 399
            ADLV ++ + +  + CG+GY+   ++  GF++ +  C     S  HEIGHN+GC HDRD+        YA+  ++   +   YR++M+    Y      +   FSNP V ++G ATG    NN+  + R  E
Sbjct:  347 ADLVALLVNDF--NACGVGYLAPFNESLGFTVTDTGCAVGNLSFPHEIGHNMGCAHDRDN-AGGSTFSYAYGHRWTSTNGGRYRSIMA----YSQGGDTRVRHFSNPGVNYIGTATGV---NNSEDNGRCHE 468
[Close]
BLAST of mRNA_H-paniculata_contig14978.2956.1 vs. uniprot
Match: A0A7V2G4H5_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Chthoniobacterales bacterium TaxID=2201154 RepID=A0A7V2G4H5_9BACT)

HSP 1 Score: 71.2 bits (173), Expect = 4.960e-10
Identity = 51/162 (31.48%), Postives = 76/162 (46.91%), Query Frame = 1 
Query:    4 ADLVQIIASPYTEDLCGLGYVFDGSDEYGFSIIEPTCIDSLSSQVHEIGHNLGCLHDRDSHVTADQKPYAHATK--YC---DDDSLAYRTMMSTQCRYPNETVAKANLFSNPNVVHLGQATGTETENNAPPSTRVLEGWEKKLYAFTLYFRGERGMVTPPTS 474
            ADLV ++ +       GL YV+ G ++ GFS++  +  DS    +HE+GHN+GCLH+R ++  A   PY +AT   Y    +     Y TM +      + T  +   FSNP+V +LG  TG   +   P    ++  W     A    FR   G   P  S
Sbjct:  349 ADLVSLLVTTLDGTNAGLAYVYTGGEDEGFSVVRLSAHDSTF--IHEVGHNMGCLHNRANN--ASNGPYGNATGGGYSFGREFTPAGYPTMRTVMSAVGSAT--RIPYFSNPDVTYLGVPTGVALDQAQPCHNALV--WNTTAPAVAA-FRATAGNQPPSVS 501
[Close]
BLAST of mRNA_H-paniculata_contig14978.2956.1 vs. uniprot
Match: D8LLU0_ECTSI (PKD domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLU0_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 1.680e-9
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 1 
Query:    1 EADLVQIIASPYTEDLCGLGYVFDGSDEYGFSIIEPTCIDSLSSQVHEIGHNLGCLHDRDSHVTADQKPYAHATKYC 231
            EADLV ++   Y  + CG G++F+ ++  GFS+++  C  + + Q HEIGHNLGC HDRD+  T     Y H  +YC
Sbjct:  310 EADLVLLVG--YFPNTCGRGWIFNFNEALGFSLMDSICFSNWT-QTHEIGHNLGCRHDRDNSNTG-MTAYGHGLRYC 382
[Close]
BLAST of mRNA_H-paniculata_contig14978.2956.1 vs. uniprot
Match: A0A835YJ94_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ94_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 6.090e-9
Identity = 47/137 (34.31%), Postives = 68/137 (49.64%), Query Frame = 1 
Query:    4 ADLVQIIASPYTEDLCGLGYVF----DGSDEYGFSIIEPTCIDSLSSQVHEIGHNLGCLHDRDS----HVTADQKPYAHATKYCDDDSLA---YRTMMSTQCRYPNETVAKANLFSNPNVVHLGQATGTETENNAPP 381
            ADLVQ I+  + +  CG G+V         + G S +  TC    S Q+HEIGHN+GC HD  +    H ++    YA+  + C   S +   +RT+M+  C        +   FS+P+V +   A GT T NNA P
Sbjct:  293 ADLVQWIS--HDKKYCGYGFVLYNLTTADSKRGVSSVLFTCFAGYS-QIHEIGHNMGCDHDSANVGGDHTSSQWASYAYGYRRCGGGSTSAPYFRTVMAYTC----SRAPRVAYFSSPDVKYSSTAVGTSTANNAKP 422
[Close]
BLAST of mRNA_H-paniculata_contig14978.2956.1 vs. uniprot
Match: A0A2A2QW91_9BACT (Uncharacterized protein n=2 Tax=unclassified Opitutae TaxID=503183 RepID=A0A2A2QW91_9BACT)

HSP 1 Score: 67.4 bits (163), Expect = 8.670e-9
Identity = 43/121 (35.54%), Postives = 59/121 (48.76%), Query Frame = 1 
Query:    4 ADLVQIIASPYTEDLCGLGYVFDGSDE-----YGFSIIEPTCIDSLSSQVHEIGHNLGCLHDRDSHVTA------DQKPYAHATKYCDDDSLAYRTMMSTQCRYPNETVAKANLFSNPNVV 333
            ADLV +I         GLGYV +   E     YGF+++E   +       HE+GHNLGC HDR++   A         PY+   ++   D L YRT+M+    Y   T  +   FSNPNV+
Sbjct:  361 ADLVCLILQRVDSSSSGLGYVLEAPAENTNPLYGFTVVEYAYVSGTEVVSHELGHNLGCTHDRNNSRNALGALSYGAYPYSFGHRFRGQDGLTYRTIMA----YAPGT--RIGYFSNPNVI 475
[Close]
BLAST of mRNA_H-paniculata_contig14978.2956.1 vs. uniprot
Match: A0A1V5PI50_9CHLR (DUF1080 domain-containing protein n=1 Tax=Chloroflexi bacterium ADurb.Bin360 TaxID=1852861 RepID=A0A1V5PI50_9CHLR)

HSP 1 Score: 66.6 bits (161), Expect = 1.580e-8
Identity = 43/136 (31.62%), Postives = 68/136 (50.00%), Query Frame = 1 
Query:    4 ADLVQIIASPYTEDLCGLGYVFDGS----DEYGFSIIEPTCIDSLSSQVHEIGHNLGCLHDRDSHVTADQKPYAHATKYCDDDSLAYRTMMSTQCRYPNETVAKANLFSNPNVVHLGQATGT-ETENNAPPSTRVL 396
            ADLV +I +  +   CG+GY+ +      + Y F+++   C     S  HE+GHN+GC HDR +        YA+  +     + A+RT+M+  C     +  + N +SNP V + GQ TG   T  N+  + R L
Sbjct:  291 ADLVTLIVN--SGGNCGIGYLMNSVSASFEAYAFTVVSRDCATGYYSFAHEMGHNMGCQHDRANASVPGAYSYAYGYQV---PNRAFRTIMAYNC---TPSCPRVNHWSNPEVSYGGQPTGVLYTATNSADNRRTL 418
[Close]
BLAST of mRNA_H-paniculata_contig14978.2956.1 vs. uniprot
Match: A0A7W1VVG7_9BACT (Immunoglobulin domain-containing protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A7W1VVG7_9BACT)

HSP 1 Score: 66.2 bits (160), Expect = 1.990e-8
Identity = 37/111 (33.33%), Postives = 56/111 (50.45%), Query Frame = 1 
Query:   49 CGLGYVFD----GSDEYGFSIIEPTCIDSLSSQVHEIGHNLGCLHDRDSHVTADQKPYAHATKYCDDDSLAYRTMMSTQCRYPNETVAKANLFSNPNVVHLGQATGTETEN 369
            CG+GYV        + + FS +  TC     S  HE+GHN+GC HDR +   +    Y++  ++   ++L YRT+M+     P   + +   FSNPNV + G  TG    N
Sbjct:  292 CGIGYVMTTLTPAFESHAFSTVHYTCATGYYSFGHELGHNMGCRHDRQNSSGSGLDSYSYGWRFNGTNNLQYRTIMAYA---PGTRIQR---FSNPNVNYFGTPTGVPIGN 396
[Close]
BLAST of mRNA_H-paniculata_contig14978.2956.1 vs. uniprot
Match: A0A7S2FPD8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FPD8_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.050e-7
Identity = 50/162 (30.86%), Postives = 71/162 (43.83%), Query Frame = 1 
Query:    4 ADLVQIIASPYTEDLCGLGYVFDGSDEYGFSIIEPTCIDSLSSQVHEIGHNLGCLHDRDSHVTADQKPYAHATKYCDDDSLAYRTMMSTQCRYPNETVAKANLFSNPNVVHL--GQATGTETENNAPPSTRV---LEGWEKKLYAFTLYFRGERGMVTPPTS 474
            ADLV ++ S      CG+ +++ G++  GFS+    C     S  HEIGHN+GC HDR +    D     +A  Y D D   +RT++   C     +  +   FSN N  +   G   GTE E+NA     V   +  W           R  +   T PTS
Sbjct:  284 ADLVAMVVS--ASAYCGMAWMYSGNEANGFSVTAYGCATGYYSFGHEIGHNMGCNHDRVTSGVGDNTD-GYAYGYWDPD-YNFRTILGYDCP---TSCPRIQRFSNSNTSYDYDGSIIGTEIEDNARQINDVRVSIANW-----------RNSQEPTTQPTS 427
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14978.2956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JF50_9PHAE4.080e-2042.65LNR domain-containing protein n=2 Tax=Ectocarpus s... [more]
D8LMP2_ECTSI3.120e-1245.45Peptidyl-Asp metallopeptidase. metallo peptidase. ... [more]
A0A3M8FRP0_9BACT3.290e-1032.58Ig-like domain-containing protein n=1 Tax=Phycisph... [more]
A0A7V2G4H5_9BACT4.960e-1031.48Uncharacterized protein (Fragment) n=1 Tax=Chthoni... [more]
D8LLU0_ECTSI1.680e-942.86PKD domain protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A835YJ94_9STRA6.090e-934.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2A2QW91_9BACT8.670e-935.54Uncharacterized protein n=2 Tax=unclassified Opitu... [more]
A0A1V5PI50_9CHLR1.580e-831.62DUF1080 domain-containing protein n=1 Tax=Chlorofl... [more]
A0A7W1VVG7_9BACT1.990e-833.33Immunoglobulin domain-containing protein n=1 Tax=V... [more]
A0A7S2FPD8_9STRA1.050e-730.86Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14978contigH-paniculata_contig14978:2315..5819 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue2.2e-10
Seed eggNOG ortholog2880.D8LC56
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Metallo-peptidase family M12B Reprolysin-like
EggNOG OGs2E79G@1,2SDWE@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size918
Cds size489
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14978.2956.1prot_H-paniculata_contig14978.2956.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14978 2743..5819 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929197.2792072-UTR-H-paniculata_contig14978:2314..27421622929197.2792072-UTR-H-paniculata_contig14978:2314..2742Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14978 2315..2742 -
1691480766.5756557-UTR-H-paniculata_contig14978:2314..27421691480766.5756557-UTR-H-paniculata_contig14978:2314..2742Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14978 2315..2742 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929197.295326-CDS-H-paniculata_contig14978:2742..28561622929197.295326-CDS-H-paniculata_contig14978:2742..2856Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14978 2743..2856 -
1691480766.5873547-CDS-H-paniculata_contig14978:2742..28561691480766.5873547-CDS-H-paniculata_contig14978:2742..2856Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14978 2743..2856 -
1622929197.3117733-CDS-H-paniculata_contig14978:3382..35091622929197.3117733-CDS-H-paniculata_contig14978:3382..3509Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14978 3383..3509 -
1691480766.5975714-CDS-H-paniculata_contig14978:3382..35091691480766.5975714-CDS-H-paniculata_contig14978:3382..3509Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14978 3383..3509 -
1622929197.324975-CDS-H-paniculata_contig14978:3965..41541622929197.324975-CDS-H-paniculata_contig14978:3965..4154Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14978 3966..4154 -
1691480766.6076841-CDS-H-paniculata_contig14978:3965..41541691480766.6076841-CDS-H-paniculata_contig14978:3965..4154Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14978 3966..4154 -
1622929197.3398333-CDS-H-paniculata_contig14978:5760..58191622929197.3398333-CDS-H-paniculata_contig14978:5760..5819Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14978 5761..5819 -
1691480766.6159017-CDS-H-paniculata_contig14978:5760..58191691480766.6159017-CDS-H-paniculata_contig14978:5760..5819Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14978 5761..5819 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14978.2956.1

>prot_H-paniculata_contig14978.2956.1 ID=prot_H-paniculata_contig14978.2956.1|Name=mRNA_H-paniculata_contig14978.2956.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=163bp
EADLVQIIASPYTEDLCGLGYVFDGSDEYGFSIIEPTCIDSLSSQVHEIG
HNLGCLHDRDSHVTADQKPYAHATKYCDDDSLAYRTMMSTQCRYPNETVA
KANLFSNPNVVHLGQATGTETENNAPPSTRVLEGWEKKLYAFTLYFRGER
GMVTPPTSCRIG*
back to top

mRNA from alignment at H-paniculata_contig14978:2315..5819-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14978.2956.1 ID=mRNA_H-paniculata_contig14978.2956.1|Name=mRNA_H-paniculata_contig14978.2956.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3505bp|location=Sequence derived from alignment at H-paniculata_contig14978:2315..5819- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGCGGACCTTGTTCAAATCATTGCTTCTCCATATACCGAGGACCTCTG
CGGGCTTGGGTGAGTACCGGAAGATAAGGTCGGGTCTTGAAGCATAGCAG
CCTACAGAAGGGCCTAACCCACCCCAGGGCACCCATGGAGCCAATCATTT
GAGGGTGCTGGGAGGAGGATTGCCGAATCAAACAGTGATAACAGTAAGGT
GACAGAAGACCTCATTTCAAGTAAATCTTATACCATCATAGAATGATTCC
GTCAAAGATTTGATGAATGAAACGACGTGTAGAACGATCAACGAGGGTGT
CTTACCTGGATAATTCCCCCGAGTGGTGGGAACATAGTATGCTGAAGTGC
CATACCCGACAGTGATGTTGATGAAACCCTCACGCGACCCTAACACGAAA
TCATCAGGGTGCTTTCTCTATCACGTGCCTATCAGCAACCACTCCGTTTT
GACCGCCGCTATCGTTGAATGACTTCACGATATCTGGATAAATATACAGG
TATGCCGAGTCGTCCAATATACATATGCCAACAATAGCCGATCATGGAGC
TTGAGGATCTATTTTCTGATCGACAGGTTTTTTAGATATAACTGATGTTG
CTGAGCCAAACGCCAGAAACTGATAGTCGGATATGAGAAGATGAGCGACA
TTCATACCCTAGCCGGACCTTGTGGGATTTGGAAATTGTAGGTGTACAGT
GCACAGGGGGAACAATCGCATTTCCCAAGAGGAGATATTCTTCTCATACT
ATGAAGAATATGACAAGTGGTTCGGCGACCCCCCTCCCCCCCCTTCCCTT
CCATCAGCAGACTCATCTCTCCGAAAGTGCGATTGTCGTCATGATAGCTA
ATACTCCCTAGTGCATGACTTATCCGTGTGCCTGATACTGTGGCTTATCG
ACATGCAGCTTCTGTCAGTAGAGGAGCATCTACGTGAGGACCATCGCGGT
TTGTTTGGATGGCCCCGTCTAATTGTGTTTTATGATATTCAAATTATTTT
TTGGTTAGAGTATAAAAAATATAACAATTATTTAAAATCAACCTAATTTT
AATTTGGCAATAAATTAAAACTAACTAATAACTGAACAAAAACAAAAGGA
AAGCCTAAAGATAAAGGCAAGAAGCACTTCCAACCTAAATTCATTAATTG
ATCATGACGATAACGTGGTAAAATAGCTCTCATCCAAGTAAATGAAAAAA
CAAAAATACAATTTTTTGAACCAAGTAATCAAGGTATGCTGGAAAAAAAC
AATACCCTGGGGTGCATTCCATGGAACCCATTTTATAATGTTAAACTGTC
CACACTCCGTCAACTTTTGCACGACTAGTGACGTGAAACATCACGTTGTT
CCATCCTGAATGTGGGGCGTGTTGTTGTCGGCCGAGAAATGAACCCGAAC
AGCACATCATTGCGTCATTTATCAACGGGGCATATGAAGCCGATTAAGTC
GCTCCTTCCTATTTATGTCCACCGGTCAGAACACGCAGCCATCACTTTTA
AGTACGAGCTTGATGCATCAATTCTTATTTGCCATGTACTCGTGATCATG
GCGTACGTCAGACTTGACTAAGTTCAAAAAGTCATTCATAAAATCAATGT
TACCGCCCCCTTCCTCCTCCCCTCGCGCCCAAATCCTTTTTGCCGTTCCC
TTGCCGTTTCTCTAGCTACGTTTTTGATGGGAGTGACGAATATGGCTTTT
CTATAATAGAACCTACATGTATCGACAGCTTATCCTCGCAAGTACACGAG
ATTGGTCACAACTTGGGCTGCCTCCATGACCGTGATTCACACGTGACGGC
CGACCAAAAACCTTACGCCCACGCAACGAAGTACTGCGACGACGACAGCC
TAGCGTGAGTCTTTCCAGCCGGCTAGGGTGGTAAAAAGGAATTTGATCGT
GTTTGTTGCATCCAGGGTAATTATCCACGTTCATCAGTGGGTATGTCCAG
TGCGAGTATTATTTGTCGTTCCCCGACATGGGATGAAAGGATACATTTTT
GTTGCCTCCCATCCTTGCCGTTAGCGAACGGACAAGTGGATGATCAATGC
TCTACGTTTGTTTGTTTTCTGGATTGGCTCCGCTGGGATGACCGATACGA
CGGTATTCCCCGCGTTCTGCGGGGCTCGGAAATCGAGGCACGGTAGTTTT
ATCGTGTCGTGGGCTTGAGCTCCTTCTCTCGCAACGCTTGGGGTGGAAAG
AAACTGTTCATATACGCCGCATGATCACGTGTCGACTTGATGTTCATACG
CTCCAGATTCGACGAATGATACACGACGTGCTTGTGATGATTAAATCCTG
AATTCCTCAGGTACCGAACTATGATGTCTACCCAGTGCCGATACCCCAAT
GAGACAGTTGCTAAAGCAAACCTCTTCTCCAACCCAAATGTGGTACATTT
GGGCCAGGCCACTGGGACCGAAACAGAAAACAATGCGAGGGCTATCGAAG
ACAACATGGTGAGCTTATGTACAGAAGCAAAGTCGATGGTTGAAAATAAT
TCGCATGTTCGGGTGCTTGAGCAGCTCTATATAAACAAAATAAATTGCTT
TCGATGAACAGTCACGGCGCCTATTCTTGTGGAGTTCAGGAGACCTTGAT
TTATTCCTGAAGCCTACCGAGTGTCACCTTGGAGAACTCTAGTTGATGCC
GCAAATAGGAATTGGAGCAGGCGGCTGTATGCTGGGGCTAGGCAAGTGAG
TCGTCACTCATGAGAAGAGTGCTATGATGACGTAAAGTGAAGGACATTTA
CTCTCCTGGCTTTAATCTTCGGGCAGTTTGAAATACCCCAGGTGGTTGGG
AAACGTACCCGTCACATGAAAGTGATTCTAATCGATGACGTATCGGTTGG
ATCAGTACTGAATCACTAGATGGGCAACATTCGTTAGCAGGATCGATTGA
CTCAGCCAAGATCCCGTTTGATGATGTATTTTAACCAGGTGTTAGTGGCC
AACTACAGGGGGCCCACCGTCGACTCGTGTTCTTGAGGGCTGGGAAAAAA
AATTGTACGCATTTACGCTCTACTTCCGAGGAGAGCGAGGAATGGTCACA
CCGCCCACATCTTGTAGGATCGGGTGATGAAAATAGGCTGGTGCGTTTGA
TCAGTTCTTTGCGTGCTTGATGGCATGTGTTTTTTCCCTTTCACCAGCAA
GTACACATTGCATAAAAAAGTACCTTTTACGGGAATTGTATATTTGCCGG
AAGTATAAGGATTTATTATGATATTTACGTCCGCGGTTTCAGCCAGTTTT
GCGGGCATGTTCAGTAACCCAGTAGCGAAGGATATTCGACTGTGACGTTT
AAGTCTATGAATACGTTTGATTTTTACTGCAGAATCCGGCGTGGAGTGTA
TTTTACCACGCTCTAGTTAGTCTCTACGGCGCCTCAAAAAGTAGAGTGCA
GATACGTGCGAATGGGCACACAAAAGTATGGGGGTTGGTGGGAGGGAGTA
AGAAGGAATATAACAGGCGTGTATGGATCGGTGTATGAATGGATGAATGT
GTGAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig14978:2315..5819-

>mRNA_H-paniculata_contig14978.2956.1 ID=mRNA_H-paniculata_contig14978.2956.1|Name=mRNA_H-paniculata_contig14978.2956.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=978bp|location=Sequence derived from alignment at H-paniculata_contig14978:2315..5819- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGCGGACCTTGTTCAAATCATTGCTTCTCCATATACCGAGGACCTCTG
CGGGCTTGGGAAGCGGACCTTGTTCAAATCATTGCTTCTCCATATACCGA
GGACCTCTGCGGGCTTGGCTACGTTTTTGATGGGAGTGACGAATATGGCT
TTTCTATAATAGAACCTACATGTATCGACAGCTTATCCTCGCAAGTACAC
GAGATTGGTCACAACTTGGGCTGCCTCCATGACCGTGATTCACACGTGAC
GGCCGACCAAAAACCTTACGCCCACGCAACGAAGTACTGCGACGACGACA
GCCTAGCCTACGTTTTTGATGGGAGTGACGAATATGGCTTTTCTATAATA
GAACCTACATGTATCGACAGCTTATCCTCGCAAGTACACGAGATTGGTCA
CAACTTGGGCTGCCTCCATGACCGTGATTCACACGTGACGGCCGACCAAA
AACCTTACGCCCACGCAACGAAGTACTGCGACGACGACAGCCTAGCGTAC
CGAACTATGATGTCTACCCAGTGCCGATACCCCAATGAGACAGTTGCTAA
AGCAAACCTCTTCTCCAACCCAAATGTGGTACATTTGGGCCAGGCCACTG
GGACCGAAACAGAAAACAATGCGGTACCGAACTATGATGTCTACCCAGTG
CCGATACCCCAATGAGACAGTTGCTAAAGCAAACCTCTTCTCCAACCCAA
ATGTGGTACATTTGGGCCAGGCCACTGGGACCGAAACAGAAAACAATGCG
CCACCGTCGACTCGTGTTCTTGAGGGCTGGGAAAAAAAATTGTACGCATT
TACGCTCTACTTCCGAGGAGAGCGAGGAATGGTCACACCGCCCACATCTT
GTAGGATCGGGTGACCACCGTCGACTCGTGTTCTTGAGGGCTGGGAAAAA
AAATTGTACGCATTTACGCTCTACTTCCGAGGAGAGCGAGGAATGGTCAC
ACCGCCCACATCTTGTAGGATCGGGTGA
back to top