mRNA_H-paniculata_contig1497.2953.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1497.2953.1
Unique NamemRNA_H-paniculata_contig1497.2953.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1497.2953.1 vs. uniprot
Match: D7FV59_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV59_ECTSI)

HSP 1 Score: 378 bits (971), Expect = 2.670e-119
Identity = 269/516 (52.13%), Postives = 315/516 (61.05%), Query Frame = 2 
Query:  347 MRALIAFLGVRTEQHMSLRD-LPDLLRSADDDKDEWVQVVSGLVRHKLMQHEQD----LGTDAALSAA--VLRKTVSEVLARANIIMDDRSSRSGEGGTDSCSRGDGRKRQVIGEAPYFGPWEERYVSRKQQPGMEEYQNVHFNARVNTLDEFSEEFASSWHSGNTGSAGASTSPTN--AXXXXXXXGFRAAPGGLMKPPGSQSQ-PTMATPNLAQARRVNLTAT-DPSAGSDGRRRTSKPIALAHARAGLVPSAGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKMGLMMINVDELQAIEAEKESAREKAKGRPGRKKAKVVGEEEHSSTNTAGSFSGEPGGTGFNADGATPQTCYSN--GNTDGRAHEGMHDSMSAYGSDKLKRPATPP------DAPS-IPGAGEIDAVAAMMGLGVAGTEESNATETSYLPPALTAVLANANSLSPEGMEKLQKYFQKKMPEGSQQERVKYHEEITPGEAGEQMRVTSYIRLDYNTWMWDRVHKKKKVK 1834
            M+ALIAFLG R E   SL   LP LL  AD DKDEWVQVVSGLVR KL+  ++D    +G +A  S +  VLRKTV EVL RA   M +R+    +      + G  R  + + EAPYFGP EERYVSRKQQP  +E+ N HF+ + + + EFSE+ AS+      G++  S+SPT   A         R   GGL+K PGS +  PT A PNLAQARRV+L A  DPSAGSDG RRTSKP+AL+    GL   +G                                K GLMMINVDELQAI AEK+SAREKAKG+PGRKKAK+ G  E S   TAG    EPG TG +A G       +   GNTDG+  EG      A G  K  +P  P       D P  +P  GEI+AVAAMM LGVAG  E    ETSYLP ALT +L NANSL PEG  KL+ +FQKKMPEGSQQERVKYHEE++PG  GE MRVTSYIRLDY TW+WDRVHKKK+VK
Sbjct:    1 MKALIAFLGARKEHLASLNHVLPSLLGMADSDKDEWVQVVSGLVRQKLLPRDEDDSTSVGDEAKTSQSDFVLRKTVREVLERAKQNMSERAGNGKQRVVGGSTIGGNRDTRRMREAPYFGPLEERYVSRKQQPRKQEFANAHFSVKYDFVGEFSEDLASNVG----GTSNTSSSPTGGGASVAAAALASRVGQGGLLKTPGSFAPAPTPAAPNLAQARRVSLAAVVDPSAGSDGLRRTSKPLALSRNYVGLQHGSGRTSSGVGGARGTRGGGGASPG-----------KAGLMMINVDELQAIHAEKQSAREKAKGKPGRKKAKLEGGGEQS---TAGM---EPG-TGASATGTQQVVANATDVGNTDGQLPEG------ASGEGKKAKPKAPAKPSATADGPMPVPQQGEIEAVAAMMVLGVAGGGED--AETSYLPEALTKLLENANSLRPEGKAKLESFFQKKMPEGSQQERVKYHEEVSPGADGEMMRVTSYIRLDYETWVWDRVHKKKRVK 486
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1497.2953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FV59_ECTSI2.670e-11952.13Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1497contigH-paniculata_contig1497:18960..25799 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue2e-07
Seed eggNOG ortholog4787.PITG_06780T0
Hectar predicted targeting categoryother localisation
EggNOG OGs294SE@1,2RBPU@2759,3QBR5@4776
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_007450.1
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size2450
Cds size1638
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1497.2953.1prot_H-paniculata_contig1497.2953.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1497 19573..25600 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929196.939622-UTR-H-paniculata_contig1497:18959..195721622929196.939622-UTR-H-paniculata_contig1497:18959..19572Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1497 18960..19572 -
1691480766.485725-UTR-H-paniculata_contig1497:18959..195721691480766.485725-UTR-H-paniculata_contig1497:18959..19572Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1497 18960..19572 -
1622929197.090901-UTR-H-paniculata_contig1497:25600..257991622929197.090901-UTR-H-paniculata_contig1497:25600..25799Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1497 25601..25799 -
1691480766.5133715-UTR-H-paniculata_contig1497:25600..257991691480766.5133715-UTR-H-paniculata_contig1497:25600..25799Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1497 25601..25799 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929197.0563684-CDS-H-paniculata_contig1497:19572..210631622929197.0563684-CDS-H-paniculata_contig1497:19572..21063Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1497 19573..21063 -
1691480766.4976096-CDS-H-paniculata_contig1497:19572..210631691480766.4976096-CDS-H-paniculata_contig1497:19572..21063Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1497 19573..21063 -
1622929197.0724773-CDS-H-paniculata_contig1497:25453..256001622929197.0724773-CDS-H-paniculata_contig1497:25453..25600Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1497 25454..25600 -
1691480766.505583-CDS-H-paniculata_contig1497:25453..256001691480766.505583-CDS-H-paniculata_contig1497:25453..25600Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1497 25454..25600 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1497.2953.1

>prot_H-paniculata_contig1497.2953.1 ID=prot_H-paniculata_contig1497.2953.1|Name=mRNA_H-paniculata_contig1497.2953.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=546bp
MPAQPKHIRAFELRLEENWSSEDVVQMLTPDFVATALLPGFPALEPTIKM
RALIAFLGVRTEQHMSLRDLPDLLRSADDDKDEWVQVVSGLVRHKLMQHE
QDLGTDAALSAAVLRKTVSEVLARANIIMDDRSSRSGEGGTDSCSRGDGR
KRQVIGEAPYFGPWEERYVSRKQQPGMEEYQNVHFNARVNTLDEFSEEFA
SSWHSGNTGSAGASTSPTNAAAAATTAGFRAAPGGLMKPPGSQSQPTMAT
PNLAQARRVNLTATDPSAGSDGRRRTSKPIALAHARAGLVPSAGGAGHHH
HLGARKSGGGGSARSARGNVGGGGGRKMGLMMINVDELQAIEAEKESARE
KAKGRPGRKKAKVVGEEEHSSTNTAGSFSGEPGGTGFNADGATPQTCYSN
GNTDGRAHEGMHDSMSAYGSDKLKRPATPPDAPSIPGAGEIDAVAAMMGL
GVAGTEESNATETSYLPPALTAVLANANSLSPEGMEKLQKYFQKKMPEGS
QQERVKYHEEITPGEAGEQMRVTSYIRLDYNTWMWDRVHKKKKVK*
back to top

mRNA from alignment at H-paniculata_contig1497:18960..25799-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1497.2953.1 ID=mRNA_H-paniculata_contig1497.2953.1|Name=mRNA_H-paniculata_contig1497.2953.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6840bp|location=Sequence derived from alignment at H-paniculata_contig1497:18960..25799- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGATGAGCCGCAACTTTTTTTATGCAGCCCTTCTCAAAGATGCAGCCCCT
CTCAAGATGCAGCCCTTTGTAATGGTCACGGGATTCCTGCACACGGGATT
TCTGTTCTTCCCCTTATCAAGGAAACAAATATAAACATCTCACACAGCGC
AGGGAGATACTGAACATAGCCAACAGGAGCTCGTGTGGGAATTGATGATA
TGCCTGCACAACCGAAGCACATACGGGCTTTCGAGCTCAGGTTAGAGGAA
AACTGGAGCAGCGAAGATGTTGTGCAGATGCTCACTCCAGATTTTGTCGC
CACGGCGCTCCTTCCAGGCTTCCCCGCACTTGAACCCACGATAAAGGTGA
TGGAGGCACGGGAATACGAAATGATGTCATGATGCTCTCGTTGTGTTGTG
CTCGTTATGAGCACGACAAGCTTAGCTATGAGATCAACGTTGCCTAGACA
AGGTCATCGTGGAAAGAGTCAGTTAATAATATACATTACATTGCCGAGGC
TACATTGCTTGATGGGCTACCAAAGTGCCCCAACCCTGATGTTTGCCATT
CATTATTATTCACATACAGAACAGACAGTGTACAAGTACCGCACCCGAGT
CGATATCATATGGAATCGTGATGGGTGAAAACCTACAAACCACATCAAAC
TACAACCAGTCTTCTTGAGACAGGGCTGCGGTCAGGAAGCCACGGCGCAC
CGTCATTGTCTTACGTCTCGAGGTGTCAACCATTGAAGGCTCATTTTCTT
TGCAAGTTTATCTGGCAGTATTGGTTTCCTTTTGGTAGAACAAACACTAC
TGGCCGACTGTATTGCTAGTATCACCTTCTAGGCACTGGTACATGGTATC
TCGGAGTGTACCCACCACCGTGAACGGCGCAATACAGCGCAATGAGCAAG
TATTGTGCAAAGGATCAACTCGTCGCGTCTTCCCTAATGTGCCTATGTGT
AATAGCTTATGGGTGGTAGGTACACAATCCCGAAGTGTCTAGAAATGTTC
CAACCCGTTCCACTTATTTTCACTCATGAATAAACGGAATACCTCTTTCT
TGGTGACCGCGGTTCGTGATGCTTAACTGCGCACACTGTGTATGAGTGCT
GAGATGCAGCCATATCATCTCGACAGTAGCGTTGTCATGGTTCACCGACT
TCCCCCAGTGTGCCCCTTTCTTTGGTGTTTTGACTGCAGGAACCATCCTA
TATATTATATTGCCCCCCGTATACTCGGGGGCCTGCATTGCGACAAATGT
CGACAGACGATATCTAACAGTCCCACGTCGCCATGGGGGGCTGACCTCTA
CATGGTCAGGACGAGATCAGACCCGTATGTCGACAAGATATACAAAATAT
TCAGCGAGATGGCGGGATGCATTCGTAAGAAATAGAAATTTAATATATCA
GTAGGTCCGAAAGTAAATAAACTGTTTTACCAGTATTTCACGTATGTCAG
GGGTTGGCTACAGCAGCCGCAACGCCGTGTGCTCGATGTAGAGATGGTAC
AAATGACAGACTACAATACATAGACACATTGCTTTCATGGAGTGGTGGCA
GCCAGATGTGCACGACAAACAGCATGATACCGCAGAGTTGCGCATGGCGA
CGAAATAAGCACAGGGTACTGTATGCAGTACAGTTGATGTACGCTGAGAG
GGAGACAGCTAGCAGACACCAGGTATATCTCGAGAGTTCCACAGCGAGCG
GTAGCCGTTGCGTGTGTGGGGTCCTGTTATGAGTGACGGTACCCACAGGC
GGCAGGTGACTTACCAGAGTCGTGCCAGTCGGAACATGACAACATAACTG
ATATATACCGTAATTGATAATTAGACGTTGAGGAATGAAGTACCAGCAGG
TAAAAACATACCCATAAAATTGAAGCCGTGAGCATGAATACCTATAATAA
GTACTCCTATAAAAATCATATAAGCAAAAACTAAAGTGGTTGCTAACTGA
CTAGTGACTGTAAAAGAGTATGGAATTAAACCTAAGCTATTTAATAATAA
AATTATTAAAAAAGTACTAAAAATAAAAGGAAAATATTTTTCTCCTTTTA
TGCCCAAAATATCATAAATCAATTCTATACACATGGAATAAATTCCCTCG
AATAAAAATTGCCATTTATTAGGGACATTAAATCTTCCCAATGTAAAAAT
AGATAAAGTCATTAAAAGAATAACCAAAATACACAATAGTGCCATAACTG
TAATACTAGTAACTGAAAAATCAATTATATTATCATAAAAAGTAAATAAA
CTTATGATAATAAATTGTTCCACGAACACTTTTTTTTTTTCCTGACATTT
TTTTCTTTTCTTCAGTGTATGTGGGACATACGAATCTCAAGCATAGTAGA
GGAAGCTTTTCATCCATAGACACTGACTCCTAATGGACCGCGTGGCGTGC
CGGGGATTAGCCCGTCTCTTTGGGGGTCAGCATCAATTAGTAGATTTATG
TGAAAACGTGTTACGGTACTCGGAAAGTCTAATCGCCTCTCGTTTGTTTT
GCAAGGTCCACTCCCCCGCACCACGGAGTCGAGATGAACTCTGTTGCATC
CTGCCAACTTTGAGCGGCCAAAAACCGCGCAAACTCGATGTTGCATCGCA
TCGGAGGTAGCACCACGTTGACTACCCTTCCTCTCTTTACCTGAAACTTG
GCATACCTCATGTCAGAGAGTTGAAATACGCGATGCAATACTATTTTATC
ACGATCCACATCCTGAAGGCGAATAATATAATTGTCGAGGGGATGAAAAT
CCACCCATACCTGCTGAAGGCTGTATCTATCGCTGAAGAAATGCCCTTCG
AACATTACAGTCAGTTCTACCCGAGGGCATAGTATTTTGGTCTCGCGATG
GTTGCGGTGTGTTTTACAGTGGAATCATAAAGTCAGTGCTACCTCGGGTA
CGGTCCATTCACGAGGCTCCGATATCATGCGTATGGGCCTTACGAATATA
ATGTACATATTTTGAAAAAATTGCGCAAGCGAAGCGAGTTGTGGCTCCGT
GGAAGGTCCTTGTTCAGTTTTGTCTTTTGCGACAAGCAGGAGGGCGATCA
GAATGAATTTTCTCGACAGCCACCACCTTGGACTAGTTCGTTGGAAAGCC
CTCGACCATAGCAATACTTTCATGTTCGGCAACTAATGCTTAATCCTCAG
TGGAAAAGGCGATATGGACCCAGTTCGAGGGAGTACATGCATGCGAAGCA
CCAATGGTCGTCGAGCTGCTATGCACAGTACGCAAATATAACAAAGATAC
GACAGTGCTCTGCAGAAAGATACGCAACAGCTGCCGTAACCGCCGACCCT
AAGCTGTGCGAGTTGCTACGAGTCATGGACCATATCTTGCGTAAATACTG
CACTGTGATTGACCTGTCTTCCGTAAAATTCCCATATGCTCAGGAGCGCC
GCCATATGTGGCTTGCCCCGGCATCGTGGGTTGAAAAAATGAAAAGGGCG
CTGTTCGTTCCAAAAGAAGCGGTCGACATACAGTCCGTACTAGTGGCAAC
AAAGCGTTCGTTTTGTCGTGACGACAGGTCCGCACACATGGCAGGCACGA
ACAACGTAGGTAGCGCGCCGTTGTAGCACTGTTGTCAGGGTGAGATCGCG
ACCATTGTGGGAGCATGTCGTTGAGTGTAGCACAGTACAAGCTGAGTCAC
GTGTCGTACACAGCAAATACATGATGCTGCGCAAGCTCTCACACACTAAT
TTCGAGTGGAAGCAGTCGTAAAAAAGTGTGTTTTTCGTTGCAGCCGCGTG
GACCGAGCAGGCGAGGAGTAAAAACGATTGTTAGGACACCTCACTGATGT
CCAGGTCAGGTTGCTATTAACTTGGCGTTGCGTTGAGTGTAACGCCCGAA
CTGTTTGAAATAGCGCGCGAAAAATGACAGAGACGGACGGCAAGATTTTT
GTTTTTTGCTTCTCTCAGCAAATTTTGTGCATCGCTGATTTCGTCATTTC
CGTGGGAGAGGTAGCGGCACAACTGTTTTACCCCCAGAAGTACTACGGGT
TTACACTCTGTCTGGAGCTTGCTCGCATTACAAATTATTCTCATCGTCTT
TGCTCAAAATTGCCACCGACACTTGATATTGATTTTGACCTCAGAGGATA
TGGCCTTGGACCGTTTATCAATTCAAGGAAAAACTGAAAGTGAAGAGTTC
AACTTTACTTCAGTGTATGTACGACCAGATACAGGGTCGTTGCATGTGCG
CTGACCCAACCGCTGTGGCTGCCTGTGCTTGGTTGCAGAGTAGTGTGAAC
AAGCACAAACTATTGATCATATAAAGTTGTGTCACTATTGTATTTAGTTG
CAACACCGAACTAGGAGACGTCTAACATTTATTGTGCCCCGCTTGTTTCT
TGTCTTTTTGGGTGAATTTCGAGATGGACTCTCTAGTTGCGACTCCCGCT
TTTTCTCCCCCTCTCCTGACTGCTTCGTGTTCGTGGATAGTAATACTTCA
AGACTGTACAAGCGCATTATGCATCCATCCACCCCTCCAGCTCGTGTAAA
CGCCGTGCAAGCGTGAATCTAAACCGGGATCTTACTCCGCGATCACCAAC
GACTGTTGACACAAGGGCTTGACCTGGCGTAATGAATCCGCAGCTTTATC
GAGCTCTATGATCGATTTTGGCTCTTGTCTCTTACCCTTCAGATTCGTCG
TTGCCGCCCTACCGTTCTCACGCCTCTCTCACGTACCTGTGTCTCGCTGC
GTTTATTTTTTCTGGCGCAATGACTCCGCCCGACAGATGAGAGCCCTCAT
CGCATTCCTTGGAGTACGAACGGAGCAGCACATGTCCCTGAGGGATCTGC
CGGATTTGTTGCGTTCGGCAGACGATGACAAGGACGAATGGGTCCAGGTA
GTGTCCGGCCTAGTGCGCCACAAGCTGATGCAGCATGAACAGGATCTTGG
CACTGATGCTGCTCTGTCCGCGGCCGTATTGCGCAAGACTGTCTCGGAAG
TTCTCGCTCGGGCTAATATAATCATGGACGACCGAAGCAGCCGCAGCGGG
GAAGGAGGAACAGATTCATGCAGTAGGGGCGATGGGCGTAAACGGCAAGT
CATCGGCGAGGCACCCTATTTTGGCCCTTGGGAGGAAAGGTATGTCAGCC
GAAAGCAGCAGCCAGGAATGGAAGAATACCAAAATGTGCACTTCAACGCT
CGAGTGAACACTCTCGATGAATTTTCCGAAGAATTCGCTTCGTCGTGGCA
CTCGGGTAATACTGGGTCCGCCGGTGCATCGACCTCTCCGACAAACGCCG
CGGCTGCTGCAACCACCGCTGGTTTCCGTGCTGCTCCCGGAGGTTTGATG
AAGCCACCAGGCTCTCAGTCACAGCCCACGATGGCGACCCCGAATCTCGC
CCAGGCACGAAGAGTTAACTTGACAGCGACCGACCCATCTGCAGGGTCGG
ATGGACGTCGCCGAACTAGCAAGCCCATAGCCTTGGCTCACGCGCGCGCA
GGTCTTGTGCCCAGCGCAGGCGGCGCAGGACACCACCACCATCTCGGCGC
GCGTAAAAGCGGCGGCGGGGGAAGCGCGCGCAGCGCTCGAGGAAACGTTG
GCGGGGGAGGCGGCCGCAAGATGGGGCTCATGATGATCAACGTGGACGAG
CTGCAGGCCATCGAGGCGGAGAAGGAATCTGCGAGGGAAAAGGCAAAGGG
TAGACCCGGTCGAAAAAAGGCCAAAGTGGTTGGCGAGGAAGAACATTCGT
CGACCAACACGGCTGGATCTTTCTCCGGAGAGCCTGGTGGTACGGGATTC
AATGCAGATGGAGCGACGCCGCAAACATGCTATAGCAATGGCAATACGGA
TGGCCGAGCGCATGAAGGTATGCACGACAGTATGTCGGCGTATGGGAGCG
ACAAGCTCAAACGACCGGCAACACCGCCCGATGCGCCGAGCATACCCGGA
GCAGGCGAAATCGATGCTGTGGCAGCGATGATGGGTCTTGGAGTGGCGGG
GACAGAGGAGAGCAACGCGACGGAAACTTCCTACCTACCGCCGGCTCTGA
CAGCTGTCCTGGCCAACGCGAACTCGCTCAGCCCCGAGGGGATGGAAAAA
CTTCAGAAGTACTTTCAGAAGAAGATGCCGGAGGGATCGCAGCAAGAGAG
AGTCAAATATCACGAGGAAATCACTCCTGGGGAAGCCGGGGAGCAGATGC
GGGTTACCAGTTATATTCGGTTGGATTACAACACTTGGATGTGGGATAGG
GTTCACAAGAAAAAAAAGGTCAAGTAGGAACAGCCACGTGACGGAAAATG
TGACGTCCATTACACAGCATGAAGCTGTTGGATATTGGGGTTATAGATAA
TTTAAAAAATTGAAGTTGACCGTGCCACGGTACCTGCACAGAGGAGGCGG
GGATATGGCCAGTAAATATATCAGGTACAATCCATCGACATGTGACTAAT
ATTTTCGGCGAGGCGTTGCAGCCTTTTATAGAGGGAAGTTCTCCCAACGA
TGCGAGCAGGTGTACTTGAGCGATGCTATCATTTCCTGCAGCGCTGATAC
ACTAGGTAACTGAAAATTAGAGTGGGGAAATCATGCTGGTTAGTACGATC
ACTCGTGACGGGATGTTTACCTCGTGCCCAGTGCGCATCTTCCAACAATA
GTTACGGTACACGAAATTACAAGCTCGCATGTACATGACTCATATCGAGC
GCGAAAGGTCACGGTACTTCACTACATTTCGTGTGCGAAAGGAAAATGAC
AAGAGATGGACGCATTTAACGGCTACTTCTTGAGATAAAATGGCACTAGT
CGTTGCTCCTGTAATTTCGGCTTGAATTTCGAAATTATATTCGTTTGGAC
TTTTGGGAGTTCAAACTTTTCGAGAATTCGAGAAATGGAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1497:18960..25799-

>mRNA_H-paniculata_contig1497.2953.1 ID=mRNA_H-paniculata_contig1497.2953.1|Name=mRNA_H-paniculata_contig1497.2953.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3276bp|location=Sequence derived from alignment at H-paniculata_contig1497:18960..25799- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTGCACAACCGAAGCACATACGGGCTTTCGAGCTCAGGTTAGAGGA
AAACTGGAGCAGCGAAGATGTTGTGCAGATGCTCACTCCAGATTTTGTCG
CCACGGCGCTCCTTCCAGGCTTCCCCGCACTTGAACCCACGATAAAGATG
CCTGCACAACCGAAGCACATACGGGCTTTCGAGCTCAGGTTAGAGGAAAA
CTGGAGCAGCGAAGATGTTGTGCAGATGCTCACTCCAGATTTTGTCGCCA
CGGCGCTCCTTCCAGGCTTCCCCGCACTTGAACCCACGATAAAGATGAGA
GCCCTCATCGCATTCCTTGGAGTACGAACGGAGCAGCACATGTCCCTGAG
GGATCTGCCGGATTTGTTGCGTTCGGCAGACGATGACAAGGACGAATGGG
TCCAGGTAGTGTCCGGCCTAGTGCGCCACAAGCTGATGCAGCATGAACAG
GATCTTGGCACTGATGCTGCTCTGTCCGCGGCCGTATTGCGCAAGACTGT
CTCGGAAGTTCTCGCTCGGGCTAATATAATCATGGACGACCGAAGCAGCC
GCAGCGGGGAAGGAGGAACAGATTCATGCAGTAGGGGCGATGGGCGTAAA
CGGCAAGTCATCGGCGAGGCACCCTATTTTGGCCCTTGGGAGGAAAGGTA
TGTCAGCCGAAAGCAGCAGCCAGGAATGGAAGAATACCAAAATGTGCACT
TCAACGCTCGAGTGAACACTCTCGATGAATTTTCCGAAGAATTCGCTTCG
TCGTGGCACTCGGGTAATACTGGGTCCGCCGGTGCATCGACCTCTCCGAC
AAACGCCGCGGCTGCTGCAACCACCGCTGGTTTCCGTGCTGCTCCCGGAG
GTTTGATGAAGCCACCAGGCTCTCAGTCACAGCCCACGATGGCGACCCCG
AATCTCGCCCAGGCACGAAGAGTTAACTTGACAGCGACCGACCCATCTGC
AGGGTCGGATGGACGTCGCCGAACTAGCAAGCCCATAGCCTTGGCTCACG
CGCGCGCAGGTCTTGTGCCCAGCGCAGGCGGCGCAGGACACCACCACCAT
CTCGGCGCGCGTAAAAGCGGCGGCGGGGGAAGCGCGCGCAGCGCTCGAGG
AAACGTTGGCGGGGGAGGCGGCCGCAAGATGGGGCTCATGATGATCAACG
TGGACGAGCTGCAGGCCATCGAGGCGGAGAAGGAATCTGCGAGGGAAAAG
GCAAAGGGTAGACCCGGTCGAAAAAAGGCCAAAGTGGTTGGCGAGGAAGA
ACATTCGTCGACCAACACGGCTGGATCTTTCTCCGGAGAGCCTGGTGGTA
CGGGATTCAATGCAGATGGAGCGACGCCGCAAACATGCTATAGCAATGGC
AATACGGATGGCCGAGCGCATGAAGGTATGCACGACAGTATGTCGGCGTA
TGGGAGCGACAAGCTCAAACGACCGGCAACACCGCCCGATGCGCCGAGCA
TACCCGGAGCAGGCGAAATCGATGCTGTGGCAGCGATGATGGGTCTTGGA
GTGGCGGGGACAGAGGAGAGCAACGCGACGGAAACTTCCTACCTACCGCC
GGCTCTGACAGCTGTCCTGGCCAACGCGAACTCGCTCAGCCCCGAGGGGA
TGGAAAAACTTCAGAAGTACTTTCAGAAGAAGATGCCGGAGGGATCGCAG
CAAGAGAGAGTCAAATATCACGAGGAAATCACTCCTGGGGAAGCCGGGGA
GCAGATGCGGGTTACCAGTTATATTCGGTTGGATTACAACACTTGGATGT
GGGATAGGGTTCACAAGAAAAAAAAGGTCAAGTAGATGAGAGCCCTCATC
GCATTCCTTGGAGTACGAACGGAGCAGCACATGTCCCTGAGGGATCTGCC
GGATTTGTTGCGTTCGGCAGACGATGACAAGGACGAATGGGTCCAGGTAG
TGTCCGGCCTAGTGCGCCACAAGCTGATGCAGCATGAACAGGATCTTGGC
ACTGATGCTGCTCTGTCCGCGGCCGTATTGCGCAAGACTGTCTCGGAAGT
TCTCGCTCGGGCTAATATAATCATGGACGACCGAAGCAGCCGCAGCGGGG
AAGGAGGAACAGATTCATGCAGTAGGGGCGATGGGCGTAAACGGCAAGTC
ATCGGCGAGGCACCCTATTTTGGCCCTTGGGAGGAAAGGTATGTCAGCCG
AAAGCAGCAGCCAGGAATGGAAGAATACCAAAATGTGCACTTCAACGCTC
GAGTGAACACTCTCGATGAATTTTCCGAAGAATTCGCTTCGTCGTGGCAC
TCGGGTAATACTGGGTCCGCCGGTGCATCGACCTCTCCGACAAACGCCGC
GGCTGCTGCAACCACCGCTGGTTTCCGTGCTGCTCCCGGAGGTTTGATGA
AGCCACCAGGCTCTCAGTCACAGCCCACGATGGCGACCCCGAATCTCGCC
CAGGCACGAAGAGTTAACTTGACAGCGACCGACCCATCTGCAGGGTCGGA
TGGACGTCGCCGAACTAGCAAGCCCATAGCCTTGGCTCACGCGCGCGCAG
GTCTTGTGCCCAGCGCAGGCGGCGCAGGACACCACCACCATCTCGGCGCG
CGTAAAAGCGGCGGCGGGGGAAGCGCGCGCAGCGCTCGAGGAAACGTTGG
CGGGGGAGGCGGCCGCAAGATGGGGCTCATGATGATCAACGTGGACGAGC
TGCAGGCCATCGAGGCGGAGAAGGAATCTGCGAGGGAAAAGGCAAAGGGT
AGACCCGGTCGAAAAAAGGCCAAAGTGGTTGGCGAGGAAGAACATTCGTC
GACCAACACGGCTGGATCTTTCTCCGGAGAGCCTGGTGGTACGGGATTCA
ATGCAGATGGAGCGACGCCGCAAACATGCTATAGCAATGGCAATACGGAT
GGCCGAGCGCATGAAGGTATGCACGACAGTATGTCGGCGTATGGGAGCGA
CAAGCTCAAACGACCGGCAACACCGCCCGATGCGCCGAGCATACCCGGAG
CAGGCGAAATCGATGCTGTGGCAGCGATGATGGGTCTTGGAGTGGCGGGG
ACAGAGGAGAGCAACGCGACGGAAACTTCCTACCTACCGCCGGCTCTGAC
AGCTGTCCTGGCCAACGCGAACTCGCTCAGCCCCGAGGGGATGGAAAAAC
TTCAGAAGTACTTTCAGAAGAAGATGCCGGAGGGATCGCAGCAAGAGAGA
GTCAAATATCACGAGGAAATCACTCCTGGGGAAGCCGGGGAGCAGATGCG
GGTTACCAGTTATATTCGGTTGGATTACAACACTTGGATGTGGGATAGGG
TTCACAAGAAAAAAAAGGTCAAGTAG
back to top