mRNA_H-paniculata_contig14949.2944.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14949.2944.1
Unique NamemRNA_H-paniculata_contig14949.2944.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14949.2944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14949contigH-paniculata_contig14949:982..4746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size1826
Cds size1218
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14949.2944.1prot_H-paniculata_contig14949.2944.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14949 3107..4324 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929195.607444-UTR-H-paniculata_contig14949:981..11431622929195.607444-UTR-H-paniculata_contig14949:981..1143Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14949 982..1143 +
1691480765.9779854-UTR-H-paniculata_contig14949:981..11431691480765.9779854-UTR-H-paniculata_contig14949:981..1143Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14949 982..1143 +
1622929195.6240153-UTR-H-paniculata_contig14949:3082..31061622929195.6240153-UTR-H-paniculata_contig14949:3082..3106Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14949 3083..3106 +
1691480765.9906554-UTR-H-paniculata_contig14949:3082..31061691480765.9906554-UTR-H-paniculata_contig14949:3082..3106Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14949 3083..3106 +
1622929195.648784-UTR-H-paniculata_contig14949:4324..47461622929195.648784-UTR-H-paniculata_contig14949:4324..4746Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14949 4325..4746 +
1691480766.0105996-UTR-H-paniculata_contig14949:4324..47461691480766.0105996-UTR-H-paniculata_contig14949:4324..4746Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14949 4325..4746 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929195.6360505-CDS-H-paniculata_contig14949:3106..43241622929195.6360505-CDS-H-paniculata_contig14949:3106..4324Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14949 3107..4324 +
1691480766.001501-CDS-H-paniculata_contig14949:3106..43241691480766.001501-CDS-H-paniculata_contig14949:3106..4324Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14949 3107..4324 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14949.2944.1

>prot_H-paniculata_contig14949.2944.1 ID=prot_H-paniculata_contig14949.2944.1|Name=mRNA_H-paniculata_contig14949.2944.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=406bp
MALASVLAMRLLSTVSLVETLVEFTYVMRSLDRFTPFERIFFLSAGVSEM
AGEVLLAVLMVRWLHKRRLAGLRDTEQRLSVGDAREHLERLSQDPINALK
NISEEYFGASEVRPDGLWSRMSDRREDAIDEQKHRLAMMLQIFVSLCVTC
SPTLAFGVGLVISRGVYDFQSPGDEAVMFSLAAISLVALAAFGAFVWCVC
LLGRETLCRKGELLLRGDSSSDLVFFNDKFIRGLLRWAVAGGAVIYSVEK
LFEVYLLISRSDRLVTDALAESLVVFQLIELVSVVSIVYLIVLDYYFGDT
PPEPTQLERMEMLLEDVAGGTREMDTMRAINEQLVLVPTTCRLASLGKRR
AHVAERIERLQKLREEIEIEMEQLEDAGSSVLQGTAAIAAAVAAEYSTVV
KNKLP*
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mRNA from alignment at H-paniculata_contig14949:982..4746+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14949.2944.1 ID=mRNA_H-paniculata_contig14949.2944.1|Name=mRNA_H-paniculata_contig14949.2944.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3765bp|location=Sequence derived from alignment at H-paniculata_contig14949:982..4746+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACAGAACAGCAGAGGGGCACCCAGAATACCAACAGATGAAGAGGGCAAG
ACCGGATAAATAGGCACATCAGAGAGAGAGAGAGAATTGTACCTCGCCAC
AAGGCCGCGAGAGGATCGGACTGAACTGCACCGTTATTATTGAGCTCGTG
GCACTTTGAGTTGTGAGTGTTAGTTGTGCTGTGTGTGTTGCTATCGGTAT
TTGCGCTTGCGGGCCAATTAATTATCTCAAACACACAACTGTAGTATGGT
CTCAATAATCCGAGTGTAGTAGCAAGCTGTGCTCACTCCATAGTGTACAG
GCTGCGCAGTACTTACAATTCGGTGTAGCTGGAGCTTTTCGGCAGTCGTT
ACACGGCAAAAGATGGAGCAGCCGTAGGTTGATTGTAAGTGAGGGAGGCT
GCAAGCAGTCTGGCGCTGTTTTGGAGAGCCGATGATTCTATCCAACACTT
CTACAGTTCAGTGTGCATGTACCCGATTCTCCATTCTTAGTTATTGGAGT
TACGCGTTGAAAACCCGTGGTCTCCTGAGACAGGGCGCGTGGAAGAGTAC
CTTACAGGCTCGCGATTACTTCCGTGGTGGCTCAAGTTTTCTTGTTTGGA
TCCCCATACCCAAGAGCAGAGCAGTGACCCAGAGATCGATCGTAAGGGTG
GTGAGAGGTGATGCCGGATAATTGGCCTGGTCATACAGCGGACCTCACAC
CATTCACGAACAAAAATCGAAGGAAATATATTATCGAAAGTGCAAGTCAT
CAAGCATTTTTAGGTACTGGTCGACCCCGATGCCCCGATGCCCCGATTGC
ACCCCTAACGAACGATGTTCTCGCAAAATCGCAACCTTATTCTGAACACC
TTTGCTCCTTTGGTTTTATCCGTATATTGCACAAACCATGAACAAATTGT
ATCTTTCGAATTTATGGAGCAAACCACACAATATTTTCCGAACGTTTTAT
TTTTTCGTAAGACATCAGTCTGATTGCTCAGACCCTGAGGTTACCCACTA
TAATCGAATATCCGTAGTACTTGGTATTTGGTCTCCTTTAGATGAAAATC
ACTCTAATTTATAAAGCCAGCTCCGACGGGCGGTCGCCGCGTGTAAGCCT
CACAGATGAAGATCTAGACCTCAGATGTATTCAAATTGTGCCATGGTCTG
CGGCACTTGGCCAGACTGCACGATCAACCACAAGAGCTTCGAGAACCTTT
GCAGAACGGAACTTCCCGAGACCATCGCTGATATTGCAGAAAACAGGCAA
ATACCCCTACGTTGGCGAAAGACCCCAAAACTGTCTACTTCTGCAACAAA
AGGCATGAAACAGCTTTTAAATGGGACCACGCGCAATTATTATCAACACA
GGTCTGTCTCCACTTGCACAATCAGCAAACTCAATGTTTTGTGGTATGCG
GTTGGCACGGAATCCCTCACGGCCCGATAAACAGTAATTAAGCGATCCAG
CCATCCACACGGCGGCATTTCTGCTCACCCTGACGGTGCTCTTTTTCCTG
TAGTAGGCGGGCAACTAATTTCGCGCAACGTTCTTTGGTATTAGCAAATT
CAGAGACTGCCGAATGTCAAGCCTTTTCTGTAACCACTGTAGTTTGATCC
CTCCTTGTCCGTACTGTAAGGATATGATATTATTTGTTCTGATATGCTTC
ATTTTTAGCTACACTTTGCGAAATGTGGTCAACCACGTTCTTGACGCCTT
CTCATCTTGACGTTGTTCCACTTGAATCACAGTGCTCCACTTCCTTTTAA
GAGGGATAAATTGTTTCATGTTATTTCCCATATGTGGTATTAAATACAGT
ACCCCGCTGACAAATTCGAATACTTGCAAATGAGCTCGTGTACTCAATGT
GCCCTGGACCATCCACAACTGCTAATGATACTCGTAAATCGAATGAATAA
GGGTAGGTACTTCATTCTATGTGTCTGCTCATTCTGAAACTCAGGTGAAT
ACTTCCATTTTTTTGTTATAACCATTTGTAACTGTTTTTATTTGTCTGGG
GGGGGGGATGTAGCTGCCCCCCTCTTTCCCATTTTCAACAATGCATCCGT
TCTTTTGTTGCCATTTTGTTGCCTCGTACTGTGCCCTTACATTCCGCGCA
GAATCCCGTTCGACGAGAAGAGACAATGGCTTTGGCGTCGGTGTTAGCGA
TGAGGCTTCTGAGCACTGTCTCGCTCGTGGAGACGCTGGTCGAGTTCACG
TACGTGATGCGCTCTCTGGACAGGTTTACTCCTTTCGAACGGATATTTTT
CTTGTCCGCGGGGGTGTCGGAGATGGCTGGAGAAGTGCTCCTCGCGGTGC
TCATGGTGCGTTGGCTGCACAAGAGGCGGCTTGCCGGTTTGCGGGACACT
GAGCAGAGACTGTCCGTGGGTGACGCTCGAGAGCACCTAGAGCGCTTGTC
CCAAGACCCAATCAACGCCCTCAAGAACATCTCGGAAGAGTACTTTGGGG
CGTCAGAAGTGAGGCCCGACGGATTGTGGTCGAGGATGAGCGACCGGAGA
GAGGATGCCATCGACGAGCAAAAGCACAGGCTGGCCATGATGCTCCAAAT
TTTCGTTTCTCTCTGCGTCACCTGCTCCCCGACGCTGGCGTTCGGCGTTG
GCCTGGTGATTTCTCGAGGCGTGTACGACTTCCAAAGCCCCGGAGATGAA
GCCGTCATGTTCTCACTGGCCGCCATATCACTCGTGGCTTTGGCAGCCTT
CGGTGCGTTTGTGTGGTGCGTATGCCTACTGGGCCGCGAAACGCTCTGCC
GAAAGGGAGAGTTGCTGCTGCGGGGCGATTCGTCTTCTGACCTGGTGTTT
TTCAACGACAAGTTTATCAGGGGGTTACTGCGTTGGGCGGTCGCCGGGGG
CGCGGTAATCTACAGTGTGGAGAAGCTATTTGAGGTCTATTTGCTGATAT
CGAGGAGCGACAGGCTGGTGACGGACGCGCTTGCCGAGTCCTTGGTGGTC
TTCCAGCTGATCGAGCTGGTGTCCGTAGTGTCGATCGTTTATCTCATCGT
GCTGGACTATTATTTCGGAGATACCCCGCCGGAGCCGACGCAGCTGGAGA
GGATGGAGATGCTTCTCGAAGACGTCGCTGGGGGGACTAGGGAGATGGAT
ACCATGCGCGCGATTAACGAGCAGCTTGTTCTCGTTCCCACAACATGTAG
ACTTGCCTCTCTCGGGAAAAGACGCGCGCACGTCGCTGAGCGGATCGAGA
GGCTACAGAAACTGAGGGAGGAGATAGAGATCGAGATGGAACAGCTGGAA
GATGCAGGGAGCAGTGTGTTGCAGGGCACAGCAGCAATAGCGGCGGCGGT
GGCAGCAGAGTATTCAACAGTGGTAAAAAACAAACTTCCGTGAGAACAGT
GGACTATCCACAGCAACGTTAGCCCAAAAAATGTGCGAAATGAGAATACA
GCATTTCCCCCAGCCCACCCCAGCGTCAAGTAATGATTGGACGCCGAAAC
CACTTCGCTCTGCGGGTGTTTAAAACACGTCTCATTTCGGGGTGAGCATA
CTCGCGGGCCTCCGCCATGAGTGTCTCCAGCCATGTGTAATCTTTCGTAG
GCGTGGATGGTATCGGCTTGCATGACGCGTCCGTTTCTTCCGTAAAAGAA
AGAGGTCCTCAGGTAAACTCGGTGACGTTTACTGGTTGTTATTCATCTTG
TGCAGCACACCCGGGCAAACATCAAACATATGTCCAATTCAATTTTCTCG
AAACTACGGTGCGCTCTCGTCGTGATACGAAATAAGAGCCAATTGTTCGC
TTGTTTAATTTCTCA
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Coding sequence (CDS) from alignment at H-paniculata_contig14949:982..4746+

>mRNA_H-paniculata_contig14949.2944.1 ID=mRNA_H-paniculata_contig14949.2944.1|Name=mRNA_H-paniculata_contig14949.2944.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2436bp|location=Sequence derived from alignment at H-paniculata_contig14949:982..4746+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTTTGGCGTCGGTGTTAGCGATGAGGCTTCTGAGCACTGTCTCGCT
CGTGGAGACGCTGGTCGAGTTCACGTACGTGATGCGCTCTCTGGACAGGT
TTACTCCTTTCGAACGGATATTTTTCTTGTCCGCGGGGGTGTCGGAGATG
GCTGGAGAAGTGCTCCTCGCGGTGCTCATGGTGCGTTGGCTGCACAAGAG
GCGGCTTGCCGGTTTGCGGGACACTGAGCAGAGACTGTCCGTGGGTGACG
CTCGAGAGCACCTAGAGCGCTTGTCCCAAGACCCAATCAACGCCCTCAAG
AACATCTCGGAAGAGTACTTTGGGGCGTCAGAAGTGAGGCCCGACGGATT
GTGGTCGAGGATGAGCGACCGGAGAGAGGATGCCATCGACGAGCAAAAGC
ACAGGCTGGCCATGATGCTCCAAATTTTCGTTTCTCTCTGCGTCACCTGC
TCCCCGACGCTGGCGTTCGGCGTTGGCCTGGTGATTTCTCGAGGCGTGTA
CGACTTCCAAAGCCCCGGAGATGAAGCCGTCATGTTCTCACTGGCCGCCA
TATCACTCGTGGCTTTGGCAGCCTTCGGTGCGTTTGTGTGGTGCGTATGC
CTACTGGGCCGCGAAACGCTCTGCCGAAAGGGAGAGTTGCTGCTGCGGGG
CGATTCGTCTTCTGACCTGGTGTTTTTCAACGACAAGTTTATCAGGGGGT
TACTGCGTTGGGCGGTCGCCGGGGGCGCGGTAATCTACAGTGTGGAGAAG
CTATTTGAGGTCTATTTGCTGATATCGAGGAGCGACAGGCTGGTGACGGA
CGCGCTTGCCGAGTCCTTGGTGGTCTTCCAGCTGATCGAGCTGGTGTCCG
TAGTGTCGATCGTTTATCTCATCGTGCTGGACTATTATTTCGGAGATACC
CCGCCGGAGCCGACGCAGCTGGAGAGGATGGAGATGCTTCTCGAAGACGT
CGCTGGGGGGACTAGGGAGATGGATACCATGCGCGCGATTAACGAGCAGC
TTGTTCTCGTTCCCACAACATGTAGACTTGCCTCTCTCGGGAAAAGACGC
GCGCACGTCGCTGAGCGGATCGAGAGGCTACAGAAACTGAGGGAGGAGAT
AGAGATCGAGATGGAACAGCTGGAAGATGCAGGGAGCAGTGTGTTGCAGG
GCACAGCAGCAATAGCGGCGGCGGTGGCAGCAGAGTATTCAACAGTGGTA
AAAAACAAACTTCCGTGAATGGCTTTGGCGTCGGTGTTAGCGATGAGGCT
TCTGAGCACTGTCTCGCTCGTGGAGACGCTGGTCGAGTTCACGTACGTGA
TGCGCTCTCTGGACAGGTTTACTCCTTTCGAACGGATATTTTTCTTGTCC
GCGGGGGTGTCGGAGATGGCTGGAGAAGTGCTCCTCGCGGTGCTCATGGT
GCGTTGGCTGCACAAGAGGCGGCTTGCCGGTTTGCGGGACACTGAGCAGA
GACTGTCCGTGGGTGACGCTCGAGAGCACCTAGAGCGCTTGTCCCAAGAC
CCAATCAACGCCCTCAAGAACATCTCGGAAGAGTACTTTGGGGCGTCAGA
AGTGAGGCCCGACGGATTGTGGTCGAGGATGAGCGACCGGAGAGAGGATG
CCATCGACGAGCAAAAGCACAGGCTGGCCATGATGCTCCAAATTTTCGTT
TCTCTCTGCGTCACCTGCTCCCCGACGCTGGCGTTCGGCGTTGGCCTGGT
GATTTCTCGAGGCGTGTACGACTTCCAAAGCCCCGGAGATGAAGCCGTCA
TGTTCTCACTGGCCGCCATATCACTCGTGGCTTTGGCAGCCTTCGGTGCG
TTTGTGTGGTGCGTATGCCTACTGGGCCGCGAAACGCTCTGCCGAAAGGG
AGAGTTGCTGCTGCGGGGCGATTCGTCTTCTGACCTGGTGTTTTTCAACG
ACAAGTTTATCAGGGGGTTACTGCGTTGGGCGGTCGCCGGGGGCGCGGTA
ATCTACAGTGTGGAGAAGCTATTTGAGGTCTATTTGCTGATATCGAGGAG
CGACAGGCTGGTGACGGACGCGCTTGCCGAGTCCTTGGTGGTCTTCCAGC
TGATCGAGCTGGTGTCCGTAGTGTCGATCGTTTATCTCATCGTGCTGGAC
TATTATTTCGGAGATACCCCGCCGGAGCCGACGCAGCTGGAGAGGATGGA
GATGCTTCTCGAAGACGTCGCTGGGGGGACTAGGGAGATGGATACCATGC
GCGCGATTAACGAGCAGCTTGTTCTCGTTCCCACAACATGTAGACTTGCC
TCTCTCGGGAAAAGACGCGCGCACGTCGCTGAGCGGATCGAGAGGCTACA
GAAACTGAGGGAGGAGATAGAGATCGAGATGGAACAGCTGGAAGATGCAG
GGAGCAGTGTGTTGCAGGGCACAGCAGCAATAGCGGCGGCGGTGGCAGCA
GAGTATTCAACAGTGGTAAAAAACAAACTTCCGTGA
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