mRNA_H-paniculata_contig1492.2930.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1492.2930.1
Unique NamemRNA_H-paniculata_contig1492.2930.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1492.2930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1492contigH-paniculata_contig1492:12809..19035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size871
Cds size477
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1492.2930.1prot_H-paniculata_contig1492.2930.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1492 14678..19035 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929194.0956514-UTR-H-paniculata_contig1492:12808..128911622929194.0956514-UTR-H-paniculata_contig1492:12808..12891Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1492 12809..12891 +
1691480765.2117476-UTR-H-paniculata_contig1492:12808..128911691480765.2117476-UTR-H-paniculata_contig1492:12808..12891Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1492 12809..12891 +
1622929194.1136954-UTR-H-paniculata_contig1492:13352..134831622929194.1136954-UTR-H-paniculata_contig1492:13352..13483Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1492 13353..13483 +
1691480765.2278488-UTR-H-paniculata_contig1492:13352..134831691480765.2278488-UTR-H-paniculata_contig1492:13352..13483Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1492 13353..13483 +
1622929194.128386-UTR-H-paniculata_contig1492:14497..146771622929194.128386-UTR-H-paniculata_contig1492:14497..14677Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1492 14498..14677 +
1691480765.2385657-UTR-H-paniculata_contig1492:14497..146771691480765.2385657-UTR-H-paniculata_contig1492:14497..14677Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1492 14498..14677 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929194.1433861-CDS-H-paniculata_contig1492:14677..147801622929194.1433861-CDS-H-paniculata_contig1492:14677..14780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1492 14678..14780 +
1691480765.2504177-CDS-H-paniculata_contig1492:14677..147801691480765.2504177-CDS-H-paniculata_contig1492:14677..14780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1492 14678..14780 +
1622929194.158217-CDS-H-paniculata_contig1492:17101..172051622929194.158217-CDS-H-paniculata_contig1492:17101..17205Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1492 17102..17205 +
1691480765.2686067-CDS-H-paniculata_contig1492:17101..172051691480765.2686067-CDS-H-paniculata_contig1492:17101..17205Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1492 17102..17205 +
1622929194.171581-CDS-H-paniculata_contig1492:18765..190351622929194.171581-CDS-H-paniculata_contig1492:18765..19035Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1492 18766..19035 +
1691480765.2763116-CDS-H-paniculata_contig1492:18765..190351691480765.2763116-CDS-H-paniculata_contig1492:18765..19035Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1492 18766..19035 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1492.2930.1

>prot_H-paniculata_contig1492.2930.1 ID=prot_H-paniculata_contig1492.2930.1|Name=mRNA_H-paniculata_contig1492.2930.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=159bp
MPGPGRPAKGRPPKSSKGKAPAKPPRAGDAARKIGESFLKIADVIDECPP
LAKLFEGNILQHRFQDVLQFHSSDAGSSHGGGGGGTAGTPERKMLEPKED
SPLSQDQNQDENQDQDADQDRSPQSPYAEDEGGQDRKCMERGGVAKEETD
RIQGAEEEG
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mRNA from alignment at H-paniculata_contig1492:12809..19035+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1492.2930.1 ID=mRNA_H-paniculata_contig1492.2930.1|Name=mRNA_H-paniculata_contig1492.2930.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6227bp|location=Sequence derived from alignment at H-paniculata_contig1492:12809..19035+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCCAATATTATGACTGTTGCAGCATGCAGTCGTGCAGTGGAGGTTGCAG
GTGTTGATGACGAACTCAGTAGGAATATACCAGGTCAGTAGATTTCACTG
GCCCGAGGTTGCTCGTGTTGCAAGGTATTGTGTTAGAGATCGCTTTCGAG
ACGTGACAACTTGACATGGGGCCAGGTCAATCAGTAATACAATGAAGGTT
TGTGTAATTCATCTTGAAATTACAGGGGTAGGAAAGATAAAACTGATACA
CAACACATACCCATACCTGTTGCTGCTGCTGCCTGCGACGGCCGGCATTA
ATGTCAACCCAGCCGTTTTCCCATGCTCCGCATGTGGGACATTCTTCGCC
ATGTCCACGTGTCCCCGACGCTGGCGGTTGCTGCGCCTCCTCCCCGTGCA
GCCCGCGATACTCCTGCACTTTGCTTCCAGTTGCTGCAGTAAATTACACA
AGCCTGACTCAAAATAGAATATTTACGGATCGTGTTTTGCTGTACTTTCG
ATCCAAAATATATATTTTCCGTTCCCGTAATCCTGAAATACAAGGTGCGC
TTGATGGGGGGCGGTCATCAGACAGGGCGATAATAACGCGTCCTCATCGC
CGTCTGCGTCCAAAAAAGCGTGGCAGTGAGAGCCTGCCCGAGATCCCGTG
TTAGAGTCTGAGGTATCCATCACAGGTGGGTCTCTCGGCCCTTAGCATAC
TCAACACTGCAGACTTGAACTTTCATGGATAGCCTCAACCAGCAAAACGC
TCTCTGGTACTGACTGTCTCTCTGTGCTCCTACTCTACAACTGTCCTCTC
TGTAGACTGCTCCTGTTTGGTACCGCCGACCAAAAAATAGGTGTAGTACA
TGCACAACAGGTACGCAGTACAGTCAGTCACTGGCGTGCACGTTCCTTCA
CGTGTCTGAGATAGCTGGCTGAGGCAGCTGCTTGCGTAACCTCAACCCGA
GTAATTGCCTGTGCAAGTTTTGATTGTCAGGAATCTCAACTACCCCCGGG
TCTTTTCGTTGTCTTGTGCGCTTGTGCTCCATCGTATACACAGCTTTGGG
TCGCTCTTTGATCTTTGCTTTCTTATCTTCTATTTAGCAGGTTACTGTAC
TGTACTATTACCCAACATGGACTTAAATACTGTGTTATCTTCACTCCGCA
GGACTCTCTGCTGGATCAGCGTGTGTTGTTGCTACAGTACCTGTCGCGAT
TAGAAAGCCCCTAGCCAACTTAGTGTTCAGTCAGTGATGTGCGCCGTCTA
CCCAGGGTTTTACCGTGCATGGCCGTGGTGACGATGCTTTTGTATGTGTG
TCTCAACTTCATACACGACACTGTCACGCTCTCAATTTATTGCGAGTGAG
GCTGGCATTCTGTAAATGCACTACAAGTGTCGTACTATGGACCTGAGTGC
CACCTTGTTTTTTTGGTCTTTCCTGTATTTTCATCTGAGAACCCGGGGTC
GGGGGTCAAGGGTCGAGAGTCGAGGGGGTCGACCAGTGTTACGTCAAAGT
CAAATTGTGTGATGAGAGAGGACGGAGGTCCGTGTCAACAAGCAAAATGT
CACCGTCACTCGAGAAAAAAGAGCTATTTCCACGTGTAACACCCCCCTCA
ACGGTATCCACGCCCCTCTTCTCTCTCTCTCTTTCTCTCTCTCTCTCCCT
CTCTGTCTTTTTCTCTCTCCCCCGCTGCTTATGCGTCAGGCAGGTTTCAA
TCACTCGCTAAAAAGCAAACACTGTGAAGGACGGTGGCGACAGCAACAGC
CTGGAACGTTTTTTTCGCCTGTTGGGGAAAAACGAACGCATGCAATACAA
CGAGCAACACAGAATAGAGGAATCGCGCTGAACCTTGGGCCCGTTTAACG
GCTCTTGAGGTTGTGTTAGATGCCTGGTCCGGGCCGCCCAGCGAAGGGGC
GTCCCCCGAAGTCGTCAAAGGGAAAGGCTCCGGCTAAACCGCCACGGGCT
GGGGATGCAGCGCGTAAGATTGGTGAGCTGGTGCGAGCTGTGGGATCCAC
GAAGCAAGCGAAAAAGACACAATATAGTTTTACCGCTGTAAGCAAATATA
CAGTAATTTAGACAGTTCTTGTATTATAAGGGGCTCGAAAGTTCCATCGC
TCAAGGCAGCCCAGCCCTTTTTGGTTTTACAGCATATACTCTACTTTTCT
CTATTATGTATACTCTATACCAATAGTTTCGTGAAAATAGTAAAATAATT
GCTCTGAAAAACTACACGGTACGTGAATCACACATATGTTTGTTCGTCTA
ACATTAGGAGCTGTCAAGAACAGTTTTTGGTACTTGATGCAAGCTGCTCC
CACCAAGCAACATAACAAGATTCCTCTACCCAAGCTTTCAAGCTTTCACC
GCTCTGTTTTCATGAGTAATGAAACAAAAACATGTGTTTAATAGTTTGCC
CACGAATAATTCAAAGAAATGCCCATTTTGCAAACATTTGTTTTTTCCCG
CTCTTTGCTCTCGAGATTATTTGAAATGAGAATTGAAAGATTTCTCGAAA
TTTCCGGTAAGAATTCCTGTTTAAACCCAAGACAACGCGACCTTCTGGGA
ACTCCATGAATTCGCTTGACATCGGATGTATGTGCGCGCGTGTGTGTCGA
GAAGGCCACTATCTTGTTACGTCGCACAACCTGTCGCCGTTCAAAGGTCA
CTGACGCCCAAAAAAATGGATATAATTCCCACATATATTACCCCGACTTA
GTTCGGGTATGGACTTTTCCCCCTGTTTTCTTGCCCTTACTTTCAAGTGT
TTCTTCGAGTAATGAGAAATGAAATATATATATATATTCGGATTGATGAG
ACGAAAAACTCTACGCCTGTACTTCTTTCCTTCCTCTTTTTTTGGTGGAT
GTGATCATTTCGAGTTCTTGTGCTTGTTTTTTGCATTTTGCTAGAGTCCA
ACGTCTTGGCATCATGTAAAAAGAAGAGAATGAGTGCAGAAATTATTCCC
CTTTCCAATCCGGCAATTTGCGTCATCTCGATTTCTTGCTTGATCCTTGT
CTAGATGCCATTGATTTTGATCAAATATATTGTGGTAGCAGGGGGTCAAA
TCTATTCTCCACCGGTGTTGGGCACTTATGTTTTCCCCTAGATCTGGTTT
CGAATTCGTGAATAAGTATGCAGTTTACATTTTTGTTTTCAAACATGAAA
CTCGCGTCGGTGTAATGATCTCCTGCGACGCCATGGCTCTCAAAACCTGT
AAAGCCTCATCACCAGAGTTTCGCCGGTGCGGCTGGCTTTCGCCGCTGAT
AGTGCACTTCGTTCCATCGCTAGAATTCTCTTTTTTTAGAGACACTTGAC
CATCTCCAATTCACGTGGGTATTTAAAGTCGAAGTTTTGGGGATCAACCT
CAAAAATATACATAATTCCAACGCAAACAAATGTAAATAAATCGTAGATG
ATAACGTGCATATATAAAAGGAGAGAATTTCGCTTATAGGACGGAGAAAG
CATATACTGAAAGTGAATGTAAGAAACGCTTGCCCTTTGACGTTATCTTC
GTTGTCCAGTGTTTCAAGATGGACTTGCGGCGTCGGTTTTTGCGTGATCT
TACTTCAGCACCCGAAGCGTGCCCAGAACAACCATGTGGACAAAACAGTT
GGGGCGACCGAAGTGAGAACTTACACGCACTTGGTGAATCACCTATTTGG
ACTTACTCTAGGTAATTCAAAGTATTTTGCCCCAAATCCACCCTTTTGTG
CTGGGGTAGTTCGTGTGGCATGTTTGGCGTTGCGACGTCGACCGTGCTCC
TACCTCTCCAGGCCCCATGCACGGTTACTACCCTGCCTACGCGACCGGTG
TGACAATGCTCCGTTGATCAAACTGACTAGTGCAGTCTAGGCAAATACAT
CAGCGTCTATTCTACACCCAGGTGTGAACCCATGGCTTTGTGCCTGAAGA
GGCATTATAGCAGGAGCCTCCACGCACCTCTGACTTCACCTTTTTAATTT
ATCGACAATCTGCGCGGGCTCAAGAACGAACCGCGAGCAGCACACCTATT
CAGACACAAACACGTAACAATGACCTCACAAGCATCGGCCGACAACGTTT
TGCTCGGAATTGAAGTTGAGCATCCCTGCAGTTTTCCAAGATGAATGTGC
TCTGCTCGTGACCTCGGCTCTGGGGCTTTGGCTGACTGTTCCATGCACAA
GCGGAAAGTTTTTTCAGACGCGCATCGAGATGGGGAGGGCTCTCGACTGT
AGTCTTCGACCGTGAGCCTTAACTAACTACATACGGTTAAGGTCTCTACC
GTTGTTTGTTGGGACTGGGACTGCTTGTTTTCGCTGCACGCAGGGGAGAG
TTTCTTGAAAATCGCGGATGTGATCGATGAATGCCCGCCTCTGGCGAAGC
TGTTTGAAGGCAATATCCTCCAGCATCGATTCCAAGATGTTTTGCAGGTG
TGAAGTGGGATCGTTTATTTGTATCCTTTTGTAGGCATGAGGCTGGTTGA
ATGTGTGGTGGTAATGCGTCTTTTTGTTACTCTTTTTTTATCCAACTGTC
ACGTGAACCACATGGACAGTTTCGTACGTTGCACTGGTATAGTCGCGGCT
GCATTTGGTAGGTGTGTGACATAGAGTCGCAAGACAAGTGCCTGATATCC
TCTAACCGTTTGAAGGGTTGTACAGTCGTTCATGAGCAGCTGTGCAAGGA
TTGGCCACCACTTGGCCGTTAAAAAAAAGGCTGGTATTTGCGCACTCTCG
ACATCTGCTCTACATTGTCCAAGAGAAAAATCCCTCAAAGGGAAAAGAAT
TGCTCCATTTGCACCTGATATGCACCATGTAAGCAGCTGTTTAACCGGGT
AAGCACTTCGTCCATGTACTTCTTATTAGTCGTGATGGGGTAAGGTTTCT
TCAAGGATCGAGGTTTGGAAAGTGTTGTTACGCTGTCGAAGCAACAGAAG
CTAGCTGATTGTATAGTAGGGTCGCCGAGCGAATGCAGGAAGCTTTTCGA
CGAGGGCTGTTGCTCCTCGTGAAGGGTAAAACCGAAGTGTTTCTCTGTAC
ACGCAAGAAATGCTGCTACCGCCAGCGCCTGGCATATGGGTTTTAAACTG
TAAAGTCGTCATGTGCTTTAGGGAGGGTATTATTATTTCGATGCAATCTA
AAGTGGACAAGGACGCTTGCATACTCTGTCAAACATGAAGCGGTTGAGCT
GTGCACCAGTGTGGTATTGCGTCTCAGTCAGCCGTTGATTTCCTGAATGC
GTTTTGCCGCGCACGGCACTGTTGGAGCAATAGTCTCATTTGTCAGAGTG
CAGTGCTCGATGTTCACGCCAACAACAGCAGGCTACCTGTGTACTGACCC
CGTCCTCTCTCTAGTTCTCTTTTCATTCAGGGTACGTGGCTATGGAAGTC
GCAATCCGCTAAGGAGTGTGTAGGAAGTCATCTATCGAACGCTGTACCAC
GTGAAGCGAGCGGCTCATACCAGACTATCGGGGAGAGTGCGTTGACCCGA
TGAGAAGGAAGGCGCGGGGAGAGTGGCGCATCTCTGACCGCGAGGCCGAG
TATATATATATTTTTCATCAGCATGTAACAACTTATCCTTGATGCCCTCT
TCTTCAATCGTCGCTGAACAGTTGTCCGCCTCCCTGATTTGGATATAATT
TTGCTGAGTAGGTGTAGACAAGTGAGATTTGAGGCCAGCGTATGTAAACC
CTTGAACAGGGGTACGTATATACGGGTACAGTGGCGTTAGTTATTTAATG
AGCTTTATAGAGATGCTAACCATGGCGAGGAGTGGGTTAACTCGTCGTTA
AGAAAGGCTTGGTGTATTTTAGTTTTATCCTTCCCTTCTAATCTAATTTT
GCTCTTGACTGAACGCGACTGAAGTTTGAATTTAGCTTTATCACCACCAA
CATGAGTGCAGTGGAGTTTTTAAACGATCGCGATATGTTTAGTTCAGCTA
ACCCCCCATGACCTCGCCTAACCCGCCGCGCCCTTTTTTCTATTATTGTT
TCGGCAGTTCCACAGTTCCGACGCCGGCAGCTCTCACGGCGGCGGCGGCG
GCGGTACAGCTGGGACACCAGAACGTAAAATGCTCGAACCTAAGGAAGAT
TCGCCCCTGTCCCAGGATCAGAATCAGGATGAAAATCAGGATCAGGATGC
AGATCAGGATCGGTCCCCACAGTCGCCTTATGCCGAGGATGAGGGAGGAC
AGGACAGGAAGTGTATGGAGAGGGGCGGTGTGGCAAAGGAAGAAACGGAC
AGAATACAGGGGGCCGAAGAGGAGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1492:12809..19035+

>mRNA_H-paniculata_contig1492.2930.1 ID=mRNA_H-paniculata_contig1492.2930.1|Name=mRNA_H-paniculata_contig1492.2930.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at H-paniculata_contig1492:12809..19035+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTGGTCCGGGCCGCCCAGCGAAGGGGCGTCCCCCGAAGTCGTCAAA
GGGAAAGGCTCCGGCTAAACCGCCACGGGCTGGGGATGCAGCGCGTAAGA
TTGATGCCTGGTCCGGGCCGCCCAGCGAAGGGGCGTCCCCCGAAGTCGTC
AAAGGGAAAGGCTCCGGCTAAACCGCCACGGGCTGGGGATGCAGCGCGTA
AGATTGGGGAGAGTTTCTTGAAAATCGCGGATGTGATCGATGAATGCCCG
CCTCTGGCGAAGCTGTTTGAAGGCAATATCCTCCAGCATCGATTCCAAGA
TGTTTTGCAGGGGAGAGTTTCTTGAAAATCGCGGATGTGATCGATGAATG
CCCGCCTCTGGCGAAGCTGTTTGAAGGCAATATCCTCCAGCATCGATTCC
AAGATGTTTTGCAGTTCCACAGTTCCGACGCCGGCAGCTCTCACGGCGGC
GGCGGCGGCGGTACAGCTGGGACACCAGAACGTAAAATGCTCGAACCTAA
GGAAGATTCGCCCCTGTCCCAGGATCAGAATCAGGATGAAAATCAGGATC
AGGATGCAGATCAGGATCGGTCCCCACAGTCGCCTTATGCCGAGGATGAG
GGAGGACAGGACAGGAAGTGTATGGAGAGGGGCGGTGTGGCAAAGGAAGA
AACGGACAGAATACAGGGGGCCGAAGAGGAGGGGTTCCACAGTTCCGACG
CCGGCAGCTCTCACGGCGGCGGCGGCGGCGGTACAGCTGGGACACCAGAA
CGTAAAATGCTCGAACCTAAGGAAGATTCGCCCCTGTCCCAGGATCAGAA
TCAGGATGAAAATCAGGATCAGGATGCAGATCAGGATCGGTCCCCACAGT
CGCCTTATGCCGAGGATGAGGGAGGACAGGACAGGAAGTGTATGGAGAGG
GGCGGTGTGGCAAAGGAAGAAACGGACAGAATACAGGGGGCCGAAGAGGA
GGGG
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