mRNA_H-paniculata_contig1490.2921.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1490.2921.1
Unique NamemRNA_H-paniculata_contig1490.2921.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1490.2921.1 vs. uniprot
Match: UPI000B778AD2 (uncharacterized protein LOC110722901 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B778AD2)

HSP 1 Score: 90.1 bits (222), Expect = 1.930e-19
Identity = 46/130 (35.38%), Postives = 74/130 (56.92%), Query Frame = 1
Query:    1 QQDGAISHTGKDTPLKLSELGKDGGWNVNLVTQPAQSPDLNINDFEFFASLKSRVWRERYGTIDGLVEGIKSMYEAYEASTLERVWQSLFKRYNQVLKALGGNDFEIQHTETKKRQRVGSLPKSVKIDGE 390
            QQD A  H   D P  L E  KDG ++++L+ QPAQSPDLN+ D  FF ++++   +E   +++ LVE + + Y +Y+   +   W        +++K  GGN+F+  H   K+ QR+G LP  V++  E
Sbjct:   84 QQDNARPHINIDDPEFLEEANKDG-FDMHLICQPAQSPDLNVLDLGFFRAIQAIQHQEFPESVEELVESVLTSYASYDPRIINMTWLHSMYVMEEIMKVKGGNNFKNPHKGKKRLQRLGLLPSYVEVSNE 212          
BLAST of mRNA_H-paniculata_contig1490.2921.1 vs. uniprot
Match: J3S7K7_BETVV (Mariner transposase n=2 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=J3S7K7_BETVV)

HSP 1 Score: 91.3 bits (225), Expect = 9.220e-19
Identity = 47/136 (34.56%), Postives = 74/136 (54.41%), Query Frame = 1
Query:    1 QQDGAISHTGKDTPLKLSELGKDGGWNVNLVTQPAQSPDLNINDFEFFASLKSRVWRERYGTIDGLVEGIKSMYEAYEASTLERVWQSLFKRYNQVLKALGGNDFEIQHTETKKRQRVGSLPKSVKIDGETFDTAV 408
            QQD A  H  +    +  E  ++GG+ +N++ QPAQSPDLNI D  FF +++S   +    T+D L++ ++  Y  YE   +   W  L     ++LK  GGN+++  H   KK  R+G LP +V+I  E  +  V
Sbjct:  359 QQDNARPHI-QPNDAEFLEACREGGFEINIICQPAQSPDLNILDLGFFKAIQSIQHQSFPKTVDELIKSVEDAYTVYEPRIINYTWIHLMYVMVEILKVKGGNNYKNPHNSKKKMDRLGLLPTTVEISEELVNDTV 493          
BLAST of mRNA_H-paniculata_contig1490.2921.1 vs. uniprot
Match: UPI00053F7236 (uncharacterized protein LOC104908485 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F7236)

HSP 1 Score: 88.2 bits (217), Expect = 1.880e-18
Identity = 46/139 (33.09%), Postives = 81/139 (58.27%), Query Frame = 1
Query:    1 QQDGAISHT-GKDTPLKLSELGKDGGWNVNLVTQPAQSPDLNINDFEFFASLKSRVWRERYGTIDGLVEGIKSMYEAYEASTLERVWQSLFKRYNQVLKALGGNDFEIQHTETKKRQRVGSLPKSVKIDGETFDTAVKW 414
            QQD A +H  G D   K +      G+N+ L+ QPAQSPDLN+ D  FF ++++ +++     ID L+E ++  Y+ ++ + ++  W  L     ++LK  GGN+++  H    + +R+G LPK+V+ D +  D AV++
Sbjct:  129 QQDNARAHIQGNDEAFKAAAT--QNGFNIKLIQQPAQSPDLNVLDLGFFRAIQALMYQTFPKNIDELIENVQDAYDKFDPNVVKYTWLKLHWVMVEILKVKGGNNYKNPHHGKARLERLGLLPKNVQFD-QIVDEAVQY 264          
BLAST of mRNA_H-paniculata_contig1490.2921.1 vs. uniprot
Match: UPI000B8A8B59 (uncharacterized protein LOC110790786 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8A8B59)

HSP 1 Score: 88.6 bits (218), Expect = 7.170e-18
Identity = 47/138 (34.06%), Postives = 74/138 (53.62%), Query Frame = 1
Query:    1 QQDGAISHTGKDTPLKLSELGKDGGWNVNLVTQPAQSPDLNINDFEFFASLKSRVWRERYGTIDGLVEGIKSMYEAYEASTLERVWQSLFKRYNQVLKALGGNDFEIQHTETKKRQRVGSLPKSVKIDGETFDTAVKW 414
            QQD A  H   D P  L E  KDG ++++L+ QP QSPDLNI D  FF +++S   +E   +++ L+E +   Y  Y+ + +   W        ++LK  GGN+++  H   K+ QR+G LP  V++  E     V +
Sbjct:  304 QQDNARPHIEVDDPQFLEEAKKDG-FDMHLICQPPQSPDLNILDLSFFRAIQSIQHQEFPVSVEELIESVIKSYNNYDPNIINMTWLHSMYVMEEILKVKGGNNYKSPHKGKKRLQRLGVLPTYVEVPNELVQDTVHF 440          
BLAST of mRNA_H-paniculata_contig1490.2921.1 vs. uniprot
Match: Q49KC8_PEA (Transposase n=2 Tax=Pisum sativum TaxID=3888 RepID=Q49KC8_PEA)

HSP 1 Score: 88.2 bits (217), Expect = 8.090e-18
Identity = 46/128 (35.94%), Postives = 73/128 (57.03%), Query Frame = 1
Query:    1 QQDGAISHTGKDTPLKLSELGKDGGWNVNLVTQPAQSPDLNINDFEFFASLKSRVWRERYGTIDGLVEGIKSMYEAYEASTLERVWQSLFKRYNQVLKALGGNDFEIQHTETKKRQRVGSLPKSVKID 384
            QQD A +H   D PL      KDG +++ L+ QPA SPDLNI D  FF++++S  ++E   TID L+  +   +E + +    R++ SL     +++K  G N ++I H   ++ +RVG LP  +K D
Sbjct:  272 QQDNARTHINHDDPLFREAATKDG-FDIRLMCQPANSPDLNILDLGFFSAIQSLQYKEAPKTIDELISAVVKSFENFPSIKSNRIFVSLQLCMIEIMKEKGSNKYKIPHVNKERLERVGQLPIQIKCD 398          
BLAST of mRNA_H-paniculata_contig1490.2921.1 vs. uniprot
Match: UPI00053F8527 (uncharacterized protein LOC104897330 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F8527)

HSP 1 Score: 87.4 bits (215), Expect = 2.130e-17
Identity = 44/138 (31.88%), Postives = 77/138 (55.80%), Query Frame = 1
Query:    1 QQDGAISHTGKDTPLKLSELGKDGGWNVNLVTQPAQSPDLNINDFEFFASLKSRVWRERYGTIDGLVEGIKSMYEAYEASTLERVWQSLFKRYNQVLKALGGNDFEIQHTETKKRQRVGSLPKSVKIDGETFDTAVKW 414
            QQD A  H     P  ++   ++G +N+ L+ QPAQSPDLN+ D  FF ++++  ++     +D L+  ++  Y+ ++   L+  W  L     ++LK  GGN+F+  H   +K +R+G LP++V +D    D AV +
Sbjct:  369 QQDNARPHIHASDPQFIAAATQNG-FNIQLINQPAQSPDLNVLDLGFFRAIQALQYQSFPKNLDELILRVQDCYDFFDPEVLKYTWLQLQYVMVEILKCKGGNNFKNPHHAKRKLERLGLLPENVTVDQAVIDEAVTY 505          
BLAST of mRNA_H-paniculata_contig1490.2921.1 vs. uniprot
Match: UPI0007EF57A6 (uncharacterized protein LOC108207264 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EF57A6)

HSP 1 Score: 87.0 bits (214), Expect = 2.170e-17
Identity = 43/138 (31.16%), Postives = 76/138 (55.07%), Query Frame = 1
Query:    1 QQDGAISHTGKDTPLKLSELGKDGGWNVNLVTQPAQSPDLNINDFEFFASLKSRVWRERYGTIDGLVEGIKSMYEAYEASTLERVWQSLFKRYNQVLKALGGNDFEIQHTETKKRQRVGSLPKSVKIDGETFDTAVKW 414
            QQD A +H   +   +  +     G+++ L+ QP+ SPDLNI D  FF +++S +++E   TID L++ ++  Y+AY    L R++ +L     ++LK  G N + I H +    +R G LPK ++ D +   + + W
Sbjct:  276 QQDNARTHLDPND-AQFCQAASQYGFDIRLMCQPSNSPDLNILDLGFFNAIQSLLYKESPKTIDELIDAVERSYQAYPPRILNRIFCTLQTCMIEILKGRGFNKYSIPHIKKNILERQGRLPKQMRCDAQLIQSVILW 412          
BLAST of mRNA_H-paniculata_contig1490.2921.1 vs. uniprot
Match: UPI00053F5035 (uncharacterized protein LOC104895315 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F5035)

HSP 1 Score: 84.0 bits (206), Expect = 2.720e-17
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 1
Query:    1 QQDGAISHT-GKDTPLKLSELGKDGGWNVNLVTQPAQSPDLNINDFEFFASLKSRVWRERYGTIDGLVEGIKSMYEAYEASTLERVWQSLFKRYNQVLKALGGNDFEIQHTETKKRQRVGSLPKSVKIDGETFDTAV 408
            QQD A  H  G D   K +      G+N+ L+ QP QSPDLN+ DF FF ++++ +++     ID L+  ++  Y+ ++ S ++  W  L     ++L+  GGN+++  H    + +R+G LPK  K D    D AV
Sbjct:   77 QQDNARPHIQGNDEAFKAAAT--QNGFNIMLIQQPPQSPDLNVLDFSFFRAIQALMYQTFPKNIDELITNVQDAYDRFDPSVMKYTWLQLQWIMVEILQVRGGNNYKNPHHGKARLERLGLLPKIFKFDQVIVDEAV 211          
BLAST of mRNA_H-paniculata_contig1490.2921.1 vs. uniprot
Match: A0A081AGH7_PHYPR (Uncharacterized protein n=3 Tax=Phytophthora parasitica TaxID=4792 RepID=A0A081AGH7_PHYPR)

HSP 1 Score: 82.8 bits (203), Expect = 4.710e-17
Identity = 44/136 (32.35%), Postives = 73/136 (53.68%), Query Frame = 1
Query:    1 QQDGAISHTGKDTPLKLSELGKDGGWNVNLVTQPAQSPDLNINDFEFFASLKSRVWRERYGTIDGLVEGIKSMYEAYEASTLERVWQSLFKRYNQVLKALGGNDFEIQHTETKK-RQRVGSLPKSVKIDGETFDTA 405
            Q D A  H   D P  ++    DGGW++++  QPA SPD N+ND  FFAS++S   +++  TI+ LV  ++  Y   E ST+++V+ +L       +   G N +++ H   ++ R   G LP S+  +   +D A
Sbjct:   38 QHDNAKPHVAADDPEVVAACS-DGGWDMSIKPQPANSPDFNVNDLGFFASIQSLQHKKKARTIEDLVNNVEEAYNQLEYSTIDKVFVTLQSVLQASMNVDGCNKYQLPHLSKEQLRMNNGLLPPSLTCNDNIYDKA 172          
BLAST of mRNA_H-paniculata_contig1490.2921.1 vs. uniprot
Match: UPI00053FEDAB (uncharacterized protein LOC104888959 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FEDAB)

HSP 1 Score: 84.0 bits (206), Expect = 8.260e-17
Identity = 48/136 (35.29%), Postives = 70/136 (51.47%), Query Frame = 1
Query:    1 QQDGAISHTGKDTPLKLSELGKDGGWNVNLVTQPAQSPDLNINDFEFFASLKSRVWRERYGTIDGLVEGIKSMYEAYEASTLERVWQSLFKRYNQVLKALGGNDFEIQHTETKKRQRVGSLPKSVKIDGETFDTAV 408
            QQD A  H   D    L     DG +++ LV QP QSPDLN+ D  FF S++S        TI+ LV+ +++ Y+AY+  T+   W        +VLK  GGN+++  H   KK   +G LP  V++  E  D  +
Sbjct:  127 QQDNARPHIKPDDEAFLQAASTDG-FDILLVYQPPQSPDLNLLDLGFFKSIQSIQHTNFPETIEELVKSVQAEYDAYDPKTINYTWLHFMYVMLEVLKVEGGNNYKNPHKGKKKLDSMGQLPTFVEVSQELVDDTI 261          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1490.2921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000B778AD21.930e-1935.38uncharacterized protein LOC110722901 n=1 Tax=Cheno... [more]
J3S7K7_BETVV9.220e-1934.56Mariner transposase n=2 Tax=Beta vulgaris subsp. v... [more]
UPI00053F72361.880e-1833.09uncharacterized protein LOC104908485 n=1 Tax=Beta ... [more]
UPI000B8A8B597.170e-1834.06uncharacterized protein LOC110790786 n=1 Tax=Spina... [more]
Q49KC8_PEA8.090e-1835.94Transposase n=2 Tax=Pisum sativum TaxID=3888 RepID... [more]
UPI00053F85272.130e-1731.88uncharacterized protein LOC104897330 n=1 Tax=Beta ... [more]
UPI0007EF57A62.170e-1731.16uncharacterized protein LOC108207264 n=1 Tax=Daucu... [more]
UPI00053F50352.720e-1732.85uncharacterized protein LOC104895315 n=1 Tax=Beta ... [more]
A0A081AGH7_PHYPR4.710e-1732.35Uncharacterized protein n=3 Tax=Phytophthora paras... [more]
UPI00053FEDAB8.260e-1735.29uncharacterized protein LOC104888959 n=1 Tax=Beta ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1490contigH-paniculata_contig1490:19452..19868 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score92.8
Seed ortholog evalue1.3e-16
Seed eggNOG ortholog161934.XP_010695275.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMKC@1,2QQNW@2759,37YIB@33090,3GP0P@35493
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size417
Cds size417
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929193.002763-CDS-H-paniculata_contig1490:19451..198681622929193.002763-CDS-H-paniculata_contig1490:19451..19868Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1490 19452..19868 -
1691480764.7825444-CDS-H-paniculata_contig1490:19451..198681691480764.7825444-CDS-H-paniculata_contig1490:19451..19868Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1490 19452..19868 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1490.2921.1prot_H-paniculata_contig1490.2921.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1490 19452..19868 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1490.2921.1

>prot_H-paniculata_contig1490.2921.1 ID=prot_H-paniculata_contig1490.2921.1|Name=mRNA_H-paniculata_contig1490.2921.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=139bp
QQDGAISHTGKDTPLKLSELGKDGGWNVNLVTQPAQSPDLNINDFEFFAS
LKSRVWRERYGTIDGLVEGIKSMYEAYEASTLERVWQSLFKRYNQVLKAL
GGNDFEIQHTETKKRQRVGSLPKSVKIDGETFDTAVKW*
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mRNA from alignment at H-paniculata_contig1490:19452..19868-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1490.2921.1 ID=mRNA_H-paniculata_contig1490.2921.1|Name=mRNA_H-paniculata_contig1490.2921.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=417bp|location=Sequence derived from alignment at H-paniculata_contig1490:19452..19868- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCAGGACGGAGCGATCTCACACACGGGGAAAGACACGCCGCTGAAGCT CAGCGAACTCGGGAAGGACGGGGGGTGGAACGTCAATCTCGTAACTCAGC CTGCGCAGTCACCAGATCTCAACATCAACGATTTCGAGTTCTTTGCATCT CTGAAAAGTAGGGTTTGGAGGGAGCGTTACGGTACGATAGACGGCCTTGT GGAGGGGATAAAGAGCATGTATGAGGCGTACGAGGCATCAACGTTAGAGA GGGTGTGGCAGAGCCTCTTTAAGCGTTACAATCAAGTCTTAAAGGCGCTA GGAGGTAACGATTTCGAGATACAGCACACCGAAACCAAGAAAAGGCAGCG TGTGGGAAGTCTGCCAAAATCGGTCAAAATCGACGGAGAGACTTTCGACA CGGCGGTAAAATGGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1490:19452..19868-

>mRNA_H-paniculata_contig1490.2921.1 ID=mRNA_H-paniculata_contig1490.2921.1|Name=mRNA_H-paniculata_contig1490.2921.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at H-paniculata_contig1490:19452..19868- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCAGGACGGAGCGATCTCACACACGGGGAAAGACACGCCGCTGAAGCT
CAGCGAACTCGGGAAGGACGGGGGGTGGAACGTCAATCTCGTAACTCAGC
CTGCGCAGTCACCAGATCTCAACATCAACGATTTCGAGTTCTTTGCATCT
CTGAAAAGTAGGGTTTGGAGGGAGCGTTACGGTACGATAGACGGCCTTGT
GGAGGGGATAAAGAGCATGTATGAGGCGTACGAGGCATCAACGTTAGAGA
GGGTGTGGCAGAGCCTCTTTAAGCGTTACAATCAAGTCTTAAAGGCGCTA
GGAGGTAACGATTTCGAGATACAGCACACCGAAACCAAGAAAAGGCAGCG
TGTGGGAAGTCTGCCAAAATCGGTCAAAATCGACGGAGAGACTTTCGACA
CGGCGGTAAAATGGTAGCAGCAGGACGGAGCGATCTCACACACGGGGAAA
GACACGCCGCTGAAGCTCAGCGAACTCGGGAAGGACGGGGGGTGGAACGT
CAATCTCGTAACTCAGCCTGCGCAGTCACCAGATCTCAACATCAACGATT
TCGAGTTCTTTGCATCTCTGAAAAGTAGGGTTTGGAGGGAGCGTTACGGT
ACGATAGACGGCCTTGTGGAGGGGATAAAGAGCATGTATGAGGCGTACGA
GGCATCAACGTTAGAGAGGGTGTGGCAGAGCCTCTTTAAGCGTTACAATC
AAGTCTTAAAGGCGCTAGGAGGTAACGATTTCGAGATACAGCACACCGAA
ACCAAGAAAAGGCAGCGTGTGGGAAGTCTGCCAAAATCGGTCAAAATCGA
CGGAGAGACTTTCGACACGGCGGTAAAATGGTAG
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