mRNA_H-paniculata_contig149.2915.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig149.2915.1
Unique NamemRNA_H-paniculata_contig149.2915.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig149.2915.1 vs. uniprot
Match: D7FZK7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZK7_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 2.170e-25
Identity = 90/169 (53.25%), Postives = 104/169 (61.54%), Query Frame = 2 
Query:  161 PSAADLFDSVGT--ASFMSTPS-SVPESPYTKTPKSTRGXXXXXXXXXXXXXXXXXXXXXXTENAGSKGAKKEPSRGLLPPQISRPNVVTEDSALWSSDATVKRQRQLQADRRVGARSEAGGAKGEXXXXGKDLSFKQREKVKRDKGQQSRGKSYVEEEKRLLRELGSS 658
            PSAADLFDSV T  ASF+S P+ S  ++P T TPK  +                  XXXXX  +  SKG     ++GL+PPQ+SRPN+VTEDSALWSSDA+ K                       XXXX K+L+FKQREK KRDKGQ SRGKSYVEEEKRLLRELGSS
Sbjct:   37 PSAADLFDSVDTSSASFLSAPATSATDAPLT-TPKRKK---------------TDGXXXXXXXSKDSKGGAGSANKGLVPPQMSRPNIVTEDSALWSSDASRKXXXXXXXXXXXXXXXXXXXXXXXXXXXAKELTFKQREKAKRDKGQASRGKSYVEEEKRLLRELGSS 189
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BLAST of mRNA_H-paniculata_contig149.2915.1 vs. uniprot
Match: A0A7S2HPJ6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HPJ6_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.980e-12
Identity = 71/210 (33.81%), Postives = 101/210 (48.10%), Query Frame = 2 
Query:   47 MSLVGDYADSESDEESGEDPEEEQVEEVPKAAKP--TVSLPSAADLFDSVGTASFMS------TPSSVPESPYTKTPKSTRGXXXXXXXXXXXXXXXXXXXXXXTENAGSKGAKKEPSRGLLPPQISRPNVVTEDSALWSSDATVKRQRQLQADRRVGARSEAGGAKGEXXXXGKDLSFKQREKVKRDKGQQSRGKSYVEEEKRLLRELG 652
            M L+ +Y   +S++E+  D E+    EV  A K   TV+LPSA++LF SV  ASF++      TP   P  P  K  K+T                          +A    ++++    LLPPQ++RPN+ TED   WS+  +        AD    ++ +   +K          SF  REK KRD G QSR K++VEEEKRLLR+ G
Sbjct:    7 MDLLANYGSDDSEQENTSDVEDPAPIEVRSAEKKRKTVALPSASELFSSVEGASFLTAASPVPTPEVAPLQPKKKKKKNT--------------------------DAFQPASRRKMREQLLPPQLARPNLSTEDYRQWSTTKS--------ADAHNDSKKKDKSSKDAK-------SFNSREKRKRDLGMQSRHKNFVEEEKRLLRQAG 175
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BLAST of mRNA_H-paniculata_contig149.2915.1 vs. uniprot
Match: A0A7S2R5U2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5U2_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.540e-12
Identity = 63/171 (36.84%), Postives = 83/171 (48.54%), Query Frame = 2 
Query:  158 LPSAADLFDSVGTASFMS--TPSSVPESPYTKTPKSTRGXXXXXXXXXXXXXXXXXXXXXXTENAGSKGAK--KEPSRGLLPPQIS-RPNVVTEDSALWSSDATVKRQRQLQADRRVGARSEAGGAKGEXXXXGKDLSFKQREKVKRDKGQQSRGKSYVEEEKRLLRELGS 655
            LPSAA+LF SVG ASF+S  +P+  PE P  +  K                          ++  G  G K  +  S  L+PPQ+S RPN+ TED + WS+  +    ++   ++                     LSF QREK KRD G QSRGKS+VEEEKRLLR+  S
Sbjct:   44 LPSAAELFSSVGEASFLSVASPTPAPEIPPIQAKKRKTATA--------------------SDVGGGSGDKPRRTKSSHLVPPQLSSRPNIATEDVSQWSTSKSSAALKKKDKEK---------------------LSFNQREKRKRDNGMQSRGKSFVEEEKRLLRQAES 173
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BLAST of mRNA_H-paniculata_contig149.2915.1 vs. uniprot
Match: A0A6V3BDJ3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V3BDJ3_HETAK)

HSP 1 Score: 60.8 bits (146), Expect = 4.010e-7
Identity = 45/114 (39.47%), Postives = 61/114 (53.51%), Query Frame = 2 
Query:  335 TENAGSKGAKKEPS------RGLLPP---QISRPNVVTEDSALWSSDATVKRQRQLQADRRVGARSEAGGAKGEXXXXGKDLSFKQREKVKRDKGQQSRGKSYVEEEKRLLREL 649
            ++N   K  KK+ +      RGLL P   Q+ RPN VTE + LW    T  +Q   Q D                    K+ SF+ +EK+KRD+GQ SRGK+YVEEEKR+LR++
Sbjct:  115 SDNCNKKMKKKDNTQKQTTGRGLLVPPQMQLKRPNHVTEATELW----TKNKQGSKQQD--------------------KNKSFRHKEKLKRDRGQASRGKNYVEEEKRILRQM 204
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BLAST of mRNA_H-paniculata_contig149.2915.1 vs. uniprot
Match: W4FZC3_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FZC3_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 9.430e-7
Identity = 52/144 (36.11%), Postives = 76/144 (52.78%), Query Frame = 2 
Query:   47 MSLVGDYADSESDEESGEDPEEEQVEEVPKAAKPTVSLPSAADLF--DSVGTASFMSTPSSVPESPYTKTPKSTRGXXXXXXXXXXXXXXXXXXXXXXTENAGSKGAKKEPSRGLLPPQISRPNVVTEDSALWSSDATVKRQRQ 472
            MSLVG+Y+DS+S   SG D + E V+  P A KP ++LPS  DLF   +VG  + ++  +  P  P T T   T                            G+K AK++  R L+PPQ+ RPNV TED + W+++ T+K+Q+Q
Sbjct:    1 MSLVGNYSDSDS---SGSDDDVE-VKAQPCAKKP-IALPSVDDLFADTTVGKKTSLAAFAGAPIRPVTTTTTPTAKRSLDAGSDASID--------------GTKIAKRK-VRSLVPPQLRRPNVSTEDLSAWNTEKTMKQQQQ 124
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BLAST of mRNA_H-paniculata_contig149.2915.1 vs. uniprot
Match: A0A484NNZ0_9ASTE (Uncharacterized protein n=2 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A484NNZ0_9ASTE)

HSP 1 Score: 53.9 bits (128), Expect = 5.540e-5
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 2 
Query:  545 KDLSFKQREKVKRDKGQQSRGKSYVEEEKRLLRELG 652
            K+LSF Q+EK KRD GQ SRGKSYVEEEKRLLRE G
Sbjct:  130 KNLSFSQKEKRKRDMGQASRGKSYVEEEKRLLRESG 165
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BLAST of mRNA_H-paniculata_contig149.2915.1 vs. uniprot
Match: A0A444EQ59_ENSVE (Uncharacterized protein n=2 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444EQ59_ENSVE)

HSP 1 Score: 52.4 bits (124), Expect = 7.400e-5
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 2 
Query:  545 KDLSFKQREKVKRDKGQQSRGKSYVEEEKRLLRELG 652
            K+LSF Q+EK KRD GQ SRGK+YVEEEKRLLRE G
Sbjct:   81 KNLSFSQKEKRKRDLGQASRGKNYVEEEKRLLRESG 116
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BLAST of mRNA_H-paniculata_contig149.2915.1 vs. uniprot
Match: UPI001C4AD994 (UPF0690 protein C1orf52 homolog isoform X1 n=4 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4AD994)

HSP 1 Score: 53.5 bits (127), Expect = 9.370e-5
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 2 
Query:  545 KDLSFKQREKVKRDKGQQSRGKSYVEEEKRLLRELG 652
            K+LSF Q+EK KRD GQ SRGKSYVEEEKRLLRE G
Sbjct:  144 KNLSFSQKEKRKRDLGQASRGKSYVEEEKRLLRESG 179
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig149.2915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FZK7_ECTSI2.170e-2553.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2HPJ6_9STRA1.980e-1233.81Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2R5U2_9STRA2.540e-1236.84Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6V3BDJ3_HETAK4.010e-739.47Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W4FZC3_9STRA9.430e-736.11Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A484NNZ0_9ASTE5.540e-580.56Uncharacterized protein n=2 Tax=Cuscuta sect. Clei... [more]
A0A444EQ59_ENSVE7.400e-577.78Uncharacterized protein n=2 Tax=Ensete ventricosum... [more]
UPI001C4AD9949.370e-580.56UPF0690 protein C1orf52 homolog isoform X1 n=4 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig149contigH-paniculata_contig149:18345..20634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_010070.1
Exons3
Model size1227
Cds size621
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig149.2915.1prot_H-paniculata_contig149.2915.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig149 18385..20068 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929191.9359472-UTR-H-paniculata_contig149:18344..183841622929191.9359472-UTR-H-paniculata_contig149:18344..18384Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig149 18345..18384 +
1691480764.3314788-UTR-H-paniculata_contig149:18344..183841691480764.3314788-UTR-H-paniculata_contig149:18344..18384Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig149 18345..18384 +
1622929192.0036223-UTR-H-paniculata_contig149:20068..206341622929192.0036223-UTR-H-paniculata_contig149:20068..20634Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig149 20069..20634 +
1691480764.367653-UTR-H-paniculata_contig149:20068..206341691480764.367653-UTR-H-paniculata_contig149:20068..20634Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig149 20069..20634 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929191.9537792-CDS-H-paniculata_contig149:18384..184951622929191.9537792-CDS-H-paniculata_contig149:18384..18495Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig149 18385..18495 +
1691480764.3441482-CDS-H-paniculata_contig149:18384..184951691480764.3441482-CDS-H-paniculata_contig149:18384..18495Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig149 18385..18495 +
1622929191.9746983-CDS-H-paniculata_contig149:18963..193861622929191.9746983-CDS-H-paniculata_contig149:18963..19386Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig149 18964..19386 +
1691480764.3521318-CDS-H-paniculata_contig149:18963..193861691480764.3521318-CDS-H-paniculata_contig149:18963..19386Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig149 18964..19386 +
1622929191.991456-CDS-H-paniculata_contig149:19981..200681622929191.991456-CDS-H-paniculata_contig149:19981..20068Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig149 19982..20068 +
1691480764.35994-CDS-H-paniculata_contig149:19981..200681691480764.35994-CDS-H-paniculata_contig149:19981..20068Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig149 19982..20068 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig149.2915.1

>prot_H-paniculata_contig149.2915.1 ID=prot_H-paniculata_contig149.2915.1|Name=mRNA_H-paniculata_contig149.2915.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=207bp
MSMSLVGDYADSESDEESGEDPEEEQVEEVPKAAKPTVSLPSAADLFDSV
GTASFMSTPSSVPESPYTKTPKSTRGGGGGASSRAETGNNGSSSKKRKTE
NAGSKGAKKEPSRGLLPPQISRPNVVTEDSALWSSDATVKRQRQLQADRR
VGARSEAGGAKGEKGEKGKDLSFKQREKVKRDKGQQSRGKSYVEEEKRLL
RELGSS*
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mRNA from alignment at H-paniculata_contig149:18345..20634+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig149.2915.1 ID=mRNA_H-paniculata_contig149.2915.1|Name=mRNA_H-paniculata_contig149.2915.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2290bp|location=Sequence derived from alignment at H-paniculata_contig149:18345..20634+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCCAAGTTGAGCACCGACTGTCAGATTGAACGCCACGTGATGTCGATGT
CTCTCGTTGGAGATTACGCCGATTCGGAATCGGACGAAGAGTCAGGGGAG
GATCCCGAAGAAGAGCAGGTGGAAGAGGTGCCGAAGGCTGCCAAGCCCAC
GGTGCGATCCTATAACACCACGTTGTCTTTGTAGCGAAAAGTTTGTTTAG
CTAATCAGTACCCGTCAGTCGCGTGCCCATCCAGAAGGTGAGACATAATT
GAAGTGCACTTGGTATTATCGGTGTCTGTCTCTCGTCTGCTGTTGCTGGG
GCAGTGTGATACTTTCAGCTAGAGAGTTGTGTCTGATGAGGGACAACGAC
CCCCGCAATACAAGATAATGTGAATAACGTCTACTTGTTGCAGTGTGATG
TATTGTTCTACTGTACTCTATGCTAAGTGTGCTCTACTCTGAAATACTCT
ACTCTACTGTATGCTCTGAGACAAGGTTAACATCGTACAGTCCGTACCGC
CCCCCGCCCCTCTCTGCTTCCCTTCGCATTTTCACGACACTCTCTTGCGG
TCCAACCTGCATCGACCCACTCCACTCCACACCTGAACCAATTCAACTCG
CTTAAACACATACGCGCAGGTGTCCCTCCCATCAGCGGCGGATCTGTTCG
ACTCGGTGGGCACGGCATCGTTCATGTCAACCCCCAGCTCTGTTCCAGAA
AGTCCGTACACGAAGACACCCAAGTCCACCCGCGGTGGGGGCGGAGGTGC
ATCATCACGAGCAGAGACAGGGAACAACGGTAGCAGTAGCAAAAAGAGAA
AAACAGAAAATGCAGGGTCAAAAGGAGCAAAGAAGGAGCCATCGCGCGGC
TTGCTACCCCCTCAGATATCTCGACCGAACGTAGTTACGGAGGACTCGGC
GTTGTGGTCTTCCGATGCAACCGTGAAGCGACAGAGGCAGTTGCAGGCGG
ATCGGCGGGTTGGGGCCAGATCGGAAGCAGGAGGAGCCAAGGGGGAAAAG
GGCGAAAAGGGGAAGGACCTTTCGTTTAAGCAGCGAGAGAAGGTGATGTA
TCTGGTACTACCTATTCTGGCTTGTCGGTTTGATACCACTGTTTCTCCGT
AGTTGTACCAATTTTCAGGTGAAGCTGCTCCCATGATTCACGAAAATGCT
CAACGTGCGCTTTTCAAGGAGGATATACCAACTCAAGTTGACGCCATGTC
AAGTTCTACCGCTTGTGACAAGTGATGTGTGTGTGCCCCCACGTTTGATG
TGTCTGCTCATCTCTTATGTTGGCCTCGTCGTGCCGGCTGTTGTTAATAC
GGAAAGTTCATTTCCCTTGCAAAAAAATGCAAGGAGAATAAGCCCATGTT
GACATTTTGGCTGGCGGTTTGCGAGGCAGAAGTCTAGCTAACGGAAAATT
CATTTCGCACACGTTCGACTCTTGATTGGCAATGCTGGGTTTAGAGGAAA
TCGTGGTGAATTGAAAACGGCCGCCGTGGCCATACTCTGTACTATTGCAT
CTTATCACCGTTAGCACAAAGATGATCCCAATCTGCCGATACCGATGGGA
AAAAAAAGAACGCTCAGGGCGATCGATATCTGTACTCAAATTTCCCTCCC
TTCCATCATTTTGCTAAACAAATCATTTTGTTGGCAGGTGAAGAGAGATA
AAGGGCAGCAATCGAGGGGAAAAAGCTACGTAGAGGAGGAGAAAAGGTTG
TTGCGGGAGCTGGGATCTAGTTAGCAGCGCAAGAACGAAGATCGACTTAG
TAAACACGAAGTGTTACTACAGGGTCGTTCTCATGTACATATATGCGAAG
GGTGAATTAATAGAAACATTTTTCCAGAGGCTCTCGTGTCTTGTGCCTCG
TTGCTAATTTGTTCATCCTTGTCCAGGCGAGTTGTAAACATGACGGCATT
CTTGTGCAGCAAACAGTCGGGGAAGTTGTGAGTTTTAGAGGCGATCATGT
TGATGTACCGAATATTGTTCTCGGCGTCCAAGCAACCGCTGGTTGGCTCG
TGGATGATAGGTCCTCAATGTTTGCGTAAGCCAAAAGTCCGCGATACCTC
TACTGTTGCCGCGATGCAGACGCTCAGTGCAGCTTTGTGGTGACTCTCCT
CACACATGCGGTATCGCTGTTGACTAATGAGTTACCCTTCGAGCGACCGC
CGGCATATAGATATGTTTCTTGTATTATGCAAGTGTAAAGCAAAATAACT
AGCGGAAATACGACAAAGTGGAATGAAGGGCGTTACACAAAATAAGAATA
GAACCGGTTCACGGTCACTGCTGCGGCAACTACCTTGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig149:18345..20634+

>mRNA_H-paniculata_contig149.2915.1 ID=mRNA_H-paniculata_contig149.2915.1|Name=mRNA_H-paniculata_contig149.2915.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1242bp|location=Sequence derived from alignment at H-paniculata_contig149:18345..20634+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGATGTCTCTCGTTGGAGATTACGCCGATTCGGAATCGGACGAAGA
GTCAGGGGAGGATCCCGAAGAAGAGCAGGTGGAAGAGGTGCCGAAGGCTG
CCAAGCCCACGATGTCGATGTCTCTCGTTGGAGATTACGCCGATTCGGAA
TCGGACGAAGAGTCAGGGGAGGATCCCGAAGAAGAGCAGGTGGAAGAGGT
GCCGAAGGCTGCCAAGCCCACGGTGTCCCTCCCATCAGCGGCGGATCTGT
TCGACTCGGTGGGCACGGCATCGTTCATGTCAACCCCCAGCTCTGTTCCA
GAAAGTCCGTACACGAAGACACCCAAGTCCACCCGCGGTGGGGGCGGAGG
TGCATCATCACGAGCAGAGACAGGGAACAACGGTAGCAGTAGCAAAAAGA
GAAAAACAGAAAATGCAGGGTCAAAAGGAGCAAAGAAGGAGCCATCGCGC
GGCTTGCTACCCCCTCAGATATCTCGACCGAACGTAGTTACGGAGGACTC
GGCGTTGTGGTCTTCCGATGCAACCGTGAAGCGACAGAGGCAGTTGCAGG
CGGATCGGCGGGTTGGGGCCAGATCGGAAGCAGGAGGAGCCAAGGGGGAA
AAGGGCGAAAAGGGGAAGGACCTTTCGTTTAAGCAGCGAGAGAAGGTGTC
CCTCCCATCAGCGGCGGATCTGTTCGACTCGGTGGGCACGGCATCGTTCA
TGTCAACCCCCAGCTCTGTTCCAGAAAGTCCGTACACGAAGACACCCAAG
TCCACCCGCGGTGGGGGCGGAGGTGCATCATCACGAGCAGAGACAGGGAA
CAACGGTAGCAGTAGCAAAAAGAGAAAAACAGAAAATGCAGGGTCAAAAG
GAGCAAAGAAGGAGCCATCGCGCGGCTTGCTACCCCCTCAGATATCTCGA
CCGAACGTAGTTACGGAGGACTCGGCGTTGTGGTCTTCCGATGCAACCGT
GAAGCGACAGAGGCAGTTGCAGGCGGATCGGCGGGTTGGGGCCAGATCGG
AAGCAGGAGGAGCCAAGGGGGAAAAGGGCGAAAAGGGGAAGGACCTTTCG
TTTAAGCAGCGAGAGAAGGTGAAGAGAGATAAAGGGCAGCAATCGAGGGG
AAAAAGCTACGTAGAGGAGGAGAAAAGGTTGTTGCGGGAGCTGGGATCTA
GTTAGGTGAAGAGAGATAAAGGGCAGCAATCGAGGGGAAAAAGCTACGTA
GAGGAGGAGAAAAGGTTGTTGCGGGAGCTGGGATCTAGTTAG
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