mRNA_H-paniculata_contig14863.2899.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14863.2899.1
Unique NamemRNA_H-paniculata_contig14863.2899.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14863.2899.1 vs. uniprot
Match: A0A6H5KSZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ6_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 2.770e-19
Identity = 42/67 (62.69%), Postives = 51/67 (76.12%), Query Frame = 1 
Query:  109 IRPVPPPPMPRRPGTRERRRVRLNPGILGPRDRGIRFITPTGARKHLPPPPLGEIMGHGLTPPRDRG 309
             +PVPPPP+PR+ G+++RR V   P +  PRDRG +   PT  RKHLPPPPLGE MGHGL+PPRDRG
Sbjct:  465 FKPVPPPPLPRKRGSKQRRGVLAKPELRRPRDRGTQPPIPTVKRKHLPPPPLGETMGHGLSPPRDRG 531
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BLAST of mRNA_H-paniculata_contig14863.2899.1 vs. uniprot
Match: D8LNX1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNX1_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 4.930e-16
Identity = 48/103 (46.60%), Postives = 59/103 (57.28%), Query Frame = 1 
Query:    1 TDERPEDDPHWRLHKEGGSGTGAGGPADGGLGGGDCIRPVPPPPMPRRPGTRERRRVRLNPGILGPRDRGIRFITPTGARKHLPPPPLGEIMGHGLTPPRDRG 309
            +D+  EDDPH RL KEGG+                         +PR+ G+++RR V   P +  PRDRG +   PT  RKHLPPPPLGE MGHGL+PPRDRG
Sbjct:  621 SDDDAEDDPHLRLFKEGGN-------IGXXXXXXXXXXXXXXXXLPRKRGSKQRRGVLAKPELRRPRDRGTQPPIPTVTRKHLPPPPLGETMGHGLSPPRDRG 716
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14863.2899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KSZ6_9PHAE2.770e-1962.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNX1_ECTSI4.930e-1646.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14863contigH-paniculata_contig14863:5169..6018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929189.3622682-CDS-H-paniculata_contig14863:5168..53691622929189.3622682-CDS-H-paniculata_contig14863:5168..5369Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14863 5169..5369 +
1691480763.5827193-CDS-H-paniculata_contig14863:5168..53691691480763.5827193-CDS-H-paniculata_contig14863:5168..5369Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14863 5169..5369 +
1622929189.3735738-CDS-H-paniculata_contig14863:5910..60181622929189.3735738-CDS-H-paniculata_contig14863:5910..6018Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14863 5911..6018 +
1691480763.591817-CDS-H-paniculata_contig14863:5910..60181691480763.591817-CDS-H-paniculata_contig14863:5910..6018Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14863 5911..6018 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14863.2899.1prot_H-paniculata_contig14863.2899.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14863 5169..6018 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14863.2899.1

>prot_H-paniculata_contig14863.2899.1 ID=prot_H-paniculata_contig14863.2899.1|Name=mRNA_H-paniculata_contig14863.2899.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
TDERPEDDPHWRLHKEGGSGTGAGGPADGGLGGGDCIRPVPPPPMPRRPG
TRERRRVRLNPGILGPRDRGIRFITPTGARKHLPPPPLGEIMGHGLTPPR
DRG
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mRNA from alignment at H-paniculata_contig14863:5169..6018+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14863.2899.1 ID=mRNA_H-paniculata_contig14863.2899.1|Name=mRNA_H-paniculata_contig14863.2899.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=850bp|location=Sequence derived from alignment at H-paniculata_contig14863:5169..6018+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGATGAGCGACCTGAAGATGATCCGCATTGGCGACTACACAAAGAAGG
CGGCAGTGGTACGGGGGCTGGGGGACCTGCGGATGGGGGCTTAGGAGGAG
GGGACTGCATTCGGCCCGTACCCCCTCCCCCAATGCCGCGCAGGCCAGGA
ACACGGGAGAGGCGGCGTGTGAGGCTGAATCCGGGGATTCTTGGGCCCAG
GGTGAGTTTTTGGAGATGACTCTACCGAAAGCAAGGGTGCGTTCACATTG
CTGCTGGCGTGTCCATGTTATCGTGCAACAGTCGCTATAGGTTCTGCTGA
ATTTATGTCTAGTGCAGGTGGGGATGGTCCACGGTCGATTTTGATCTGTG
AGAAAACAGAGGTACGCCGGAGTCCCAATATTTTTTTCCTACACTTTGGT
CTATTTTCTCAGATGCGCAGTCAGAGGGCATCGTGGAATGGTCCTTCACC
CCTCCCTCCCCTACTCTCATGTACAAGAGGTTGAGAGGTTGAGGGTACTA
CGGTAGTAAAGCAGACATCTAAAAGTTTGCACTGGTATAGCGTGCGGTCG
ACCCAGAAGCAAGAAAAGACAGCCAAGCATGCGTTACCCACTCCAGCTCG
AACACCTACACGCTGAAGAAGAAACTTAGAAGAAGCAACACCCTTATAAG
GCAACAAAATTGACTAGAAAGACGCAAATCACCAACCAACGTGCATTTCT
TATTAAACCGGGATTTTCAACTTCGTGAACTATCACTTCCAGGATCGAGG
CATCAGATTCATCACCCCCACAGGGGCTCGCAAACACCTCCCCCCTCCGC
CCTTGGGCGAGATCATGGGCCATGGCCTAACGCCCCCGCGAGATCGTGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig14863:5169..6018+

>mRNA_H-paniculata_contig14863.2899.1 ID=mRNA_H-paniculata_contig14863.2899.1|Name=mRNA_H-paniculata_contig14863.2899.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig14863:5169..6018+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGATGAGCGACCTGAAGATGATCCGCATTGGCGACTACACAAAGAAGG
CGGCAGTGGTACGGGGGCTGGGGGACCTGCGGATGGGGGCTTAGGAGGAG
GGGACTGCATTCGGCCCGTACCCCCTCCCCCAATGCCGCGCAGGCCAGGA
ACACGGGAGAGGCGGCGTGTGAGGCTGAATCCGGGGATTCTTGGGCCCAG
GACAGATGAGCGACCTGAAGATGATCCGCATTGGCGACTACACAAAGAAG
GCGGCAGTGGTACGGGGGCTGGGGGACCTGCGGATGGGGGCTTAGGAGGA
GGGGACTGCATTCGGCCCGTACCCCCTCCCCCAATGCCGCGCAGGCCAGG
AACACGGGAGAGGCGGCGTGTGAGGCTGAATCCGGGGATTCTTGGGCCCA
GGGATCGAGGCATCAGATTCATCACCCCCACAGGGGCTCGCAAACACCTC
CCCCCTCCGCCCTTGGGCGAGATCATGGGCCATGGCCTAACGCCCCCGCG
AGATCGTGGGGATCGAGGCATCAGATTCATCACCCCCACAGGGGCTCGCA
AACACCTCCCCCCTCCGCCCTTGGGCGAGATCATGGGCCATGGCCTAACG
CCCCCGCGAGATCGTGGG
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