mRNA_H-paniculata_contig1486.2895.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1486.2895.1
Unique NamemRNA_H-paniculata_contig1486.2895.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1486.2895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1486contigH-paniculata_contig1486:12380..15576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size930
Cds size636
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1486.2895.1prot_H-paniculata_contig1486.2895.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1486 12380..15283 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929182.5553522-CDS-H-paniculata_contig1486:12379..128621622929182.5553522-CDS-H-paniculata_contig1486:12379..12862Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1486 12380..12862 -
1691480763.2434354-CDS-H-paniculata_contig1486:12379..128621691480763.2434354-CDS-H-paniculata_contig1486:12379..12862Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1486 12380..12862 -
1622929182.5937638-CDS-H-paniculata_contig1486:15130..152831622929182.5937638-CDS-H-paniculata_contig1486:15130..15283Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1486 15131..15283 -
1691480763.2553287-CDS-H-paniculata_contig1486:15130..152831691480763.2553287-CDS-H-paniculata_contig1486:15130..15283Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1486 15131..15283 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929182.613612-UTR-H-paniculata_contig1486:15283..155761622929182.613612-UTR-H-paniculata_contig1486:15283..15576Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1486 15284..15576 -
1691480763.2684658-UTR-H-paniculata_contig1486:15283..155761691480763.2684658-UTR-H-paniculata_contig1486:15283..15576Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1486 15284..15576 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1486.2895.1

>prot_H-paniculata_contig1486.2895.1 ID=prot_H-paniculata_contig1486.2895.1|Name=mRNA_H-paniculata_contig1486.2895.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=212bp
MARRLELIEFSMPVSRRGMTASADTRLAYEACTRYIASSINGMEIQATAD
MEKWIPLADGLEGELYAQACVMMVEAVKSGEGDEASQVEKWLLIQRASVR
LMHFCAEIAQHRGCFTISRDDVEAAWDVLGTSANRMPCAGFLAVDDLESE
SQESGEENEAYDSSEDIGSDDDSDDDDDDYDDEFNDECNDAYSDDYMSDV
HNDDDNDYDDWV
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mRNA from alignment at H-paniculata_contig1486:12380..15576-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1486.2895.1 ID=mRNA_H-paniculata_contig1486.2895.1|Name=mRNA_H-paniculata_contig1486.2895.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3197bp|location=Sequence derived from alignment at H-paniculata_contig1486:12380..15576- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCCATGCACCAGACATTCACTGCCATCCCAACAGCAGACGACGGAGCTG
AGCACCTGAGAGTAGAGGGCGAGCGTGATAACAGCGGGGAGAAAATCCGA
TTGCTGTGGCTTTCGATTCAGTTCAACTTGTCAGCGTAGCCCTGGGCGCA
TTCTATCACAGTGCTACGCCGGTTTACACACTCATTCAGCAGACAGTCAT
CAATGCAACTATAGAGTGCTGTGTGCACAGCAGCGCTATTGAGGTAGCGT
CGACAGACACTCCAGAGGTTCTTGGAAGAAGAAGCATTGGAATATGGCGC
GGCGGCTAGAGCTCATCGAGTTTTCAATGCCAGTCTCTCGTCGTGGGATG
ACTGCATCAGCTGATACGAGGCTCGCCTACGAGGCGTGCACCAGATACAT
AGCCTCTTCGATAAACGGCATGGAGATCCAAGCGACCGCGGACATGGTAA
GTCAAAACAGGCTAATTTATTACCTGCGACCAGACGCGTGTATCAAGAGA
ATAGCAATAGAGCAAGCATCGGCACACATAGGTGCATTCAATCGAATTAC
GAGTAGTGAAACCACCGCTAACACAGCAAATAGTCCTTAGGTTGTTGTAA
ATTCCTTTACCCTATACATCACTTCAGCATAACACAGTGATTTGAAATTT
GAAAGCAATATTTCACAGCTCGGATGAAGGTCCTTCATCCCTCGATGAAG
GATGTCGCGGGTGTTGGAAGTATACCAGCTCGAGGATACCTCGAGCCTTC
CGAAACCCACAAATCGAGAGCATGGATATTCTGCACACCTTCGAGTAGTG
TTCGACTCTTGAGTACTAGCGCACCTCCACAGATATTTCTACTTCCGAGC
ATGAAGGGATGACGGTTCCGTTGCGTGTTCATTACTTGAAGACCAAACCT
TCGTCCAAGCTGCGCAATTTTGAAAAAGGGGTCCTACGATGGCCGCTCAG
CGATTTTTTTTTAGATTTACATGACACATAAATAGCGATGGCTCTTTTTA
CGGTGTACTAAATTTAGTGCAAACAATTTTTAGAGCCCAAATACCGCCTC
TCTACTTCGTCGTCAGATGGGTCTGGTTCCTCCTGAGTACGCTGTTCCAC
CATACAGCACGCACTGCAGCATGACTGACACGGGCAGAAAAAATGGCATG
CACCCGTTTGAAAGTGCACTGCGCCTTGTAAGCATGAGTTTTGTAGGCAC
TAATATTGTGCCTCACTACTAGTAGTAAGGCATCATCCCTAAAAGAGTCT
ATCGAATGTAAAGAACATAAACTTCGGAATATATACCTCCGAGTATTGGT
TTTAAGAATCGCGTCTGCACTTTTCAATCACACTTGACATTATTTGGGCT
TTCCCGTAGCAGACGCGACCGTTTATGGAGCGCGACGCGCCCAGCACACG
TTGCCCATCAGTGCATCAGCCGTGGGTTGCATTGCGGATACCACGGGAGC
ACTGCACTAGTATTTCTGCGCTTTCACAGCGTTTTCTAAGCGGAATCGTA
CGTTTAACGCTGTCTGTAGGTTTGTATCATCTAAATTTTGTAATTTGTGC
CCCCCAGAAATTGGCTGCTGGGGATGACCCTTGTCGCCATTAGAGCCATT
ACAGTCAGTACCTCATAATAGCGGCTCGCTACTGCAGAAACTCTAATTTC
GGGCCGTATATGAAGCTGGATTTCTCAGATCTCCTTTCCTCGATGGATGT
GAAAACTTTTAGATCTTATATCGTGTTTTTGGTTTACCGTATGTCATCTC
TATGATCTACATGTGTTAGCGCATACCATTGGCAGTAGCCGACCCAAACA
CAAATGCAGTTGTACATACCGTTGTAGTCACCAAAGGGGCACGATGTTCT
CGCCAGACTTCCACGTCCACTCATTGTACTCTACGAACCACAGCATTCTA
CCGTACTGCTGTATATTCCATCGATCGTTGAATAATCCATGCCGAAAGCT
ACCTATGGCGAACGTTGGGTAATCAACCCAACTTTTCCAAACCGTCCAGC
GATGTAGTGGAAGTCACGACATAAATATATCATGTTCATGCGCGTGGGGC
GAGCCCGCTTTTACTTCATACAGCATTCACGTATTCACACATAGATCAAA
ACTACATTTCGCAGAATCAACAGTAGGGTTTGGTTCTCTTGGCCTCCCAG
AAGGCAATTAAAGAGCGTTTCGTTAGAATAGATTAAATATGAAGGGGGTT
TCGTTGACGCGGATGGTGTGCCTGTATTTTGCGAATTTCGTATTACTGTC
GAGGAGCAGAAGATTATTATTGTGTCAATTTTCGCTGGTACATGGCACTT
TCTTATGTGACCGTTGATTAATCTCCTCTGACACGACTTGAGCTCAAATT
ATTATTTTTTAATTCTTAGAAACCAAAAAGAGCCTGGGGTTCCTACCGGC
CGATTTCTGAGTGCCAGGTCTTAACTGTACCGTAGTGAGGCTTTATGTGC
TCAAGATTGGTACGGGGACTCAGACTGCTTCTTATCCCAGGGAAAAAGTT
GCGCAAAATAAGTGTGTTGTGTGGTTGGCGATACTGTGCTGGCTTCAACG
ACCCGCTTTTTGTATGTGCAATGAATATGCCCCGTCCGCGATGATCGCAT
CAGCAGCCAGTTCTATTGGCACACGGAAGGATGCACTTTCAATAGATTAT
AGAGAAAGAAACTCATGTCGACCTTCCATTCCTCGATTGTTGCCAACCGG
TCTGTCGTCTTCAGGAAAAGTGGATCCCCCTGGCTGATGGCTTGGAGGGC
GAATTATATGCACAGGCCTGCGTCATGATGGTCGAAGCCGTCAAAAGCGG
CGAAGGGGATGAGGCTTCTCAAGTAGAGAAGTGGCTCTTGATTCAGAGAG
CGTCAGTCCGACTGATGCATTTCTGCGCGGAAATTGCGCAACACAGGGGT
TGCTTCACAATTTCCAGAGACGATGTCGAAGCCGCTTGGGACGTTCTGGG
TACCTCCGCCAATCGAATGCCTTGCGCAGGCTTTCTGGCAGTCGATGACT
TGGAATCGGAGTCTCAAGAGAGCGGTGAAGAAAACGAAGCTTATGATTCC
TCGGAGGATATCGGTTCAGACGACGACAGCGACGACGACGATGATGACTA
CGACGACGAATTCAACGATGAATGCAACGATGCATATAGCGATGACTACA
TGTCCGATGTCCACAACGATGATGACAATGACTACGACGATTGGGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig1486:12380..15576-

>mRNA_H-paniculata_contig1486.2895.1 ID=mRNA_H-paniculata_contig1486.2895.1|Name=mRNA_H-paniculata_contig1486.2895.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1272bp|location=Sequence derived from alignment at H-paniculata_contig1486:12380..15576- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCGGCGGCTAGAGCTCATCGAGTTTTCAATGCCAGTCTCTCGTCG
TGGGATGACTGCATCAGCTGATACGAGGCTCGCCTACGAGGCGTGCACCA
GATACATAGCCTCTTCGATAAACGGCATGGAGATCCAAGCGACCGCGGAC
ATGATGGCGCGGCGGCTAGAGCTCATCGAGTTTTCAATGCCAGTCTCTCG
TCGTGGGATGACTGCATCAGCTGATACGAGGCTCGCCTACGAGGCGTGCA
CCAGATACATAGCCTCTTCGATAAACGGCATGGAGATCCAAGCGACCGCG
GACATGGAAAAGTGGATCCCCCTGGCTGATGGCTTGGAGGGCGAATTATA
TGCACAGGCCTGCGTCATGATGGTCGAAGCCGTCAAAAGCGGCGAAGGGG
ATGAGGCTTCTCAAGTAGAGAAGTGGCTCTTGATTCAGAGAGCGTCAGTC
CGACTGATGCATTTCTGCGCGGAAATTGCGCAACACAGGGGTTGCTTCAC
AATTTCCAGAGACGATGTCGAAGCCGCTTGGGACGTTCTGGGTACCTCCG
CCAATCGAATGCCTTGCGCAGGCTTTCTGGCAGTCGATGACTTGGAATCG
GAGTCTCAAGAGAGCGGTGAAGAAAACGAAGCTTATGATTCCTCGGAGGA
TATCGGTTCAGACGACGACAGCGACGACGACGATGATGACTACGACGACG
AATTCAACGATGAATGCAACGATGCATATAGCGATGACTACATGTCCGAT
GTCCACAACGATGATGACAATGACTACGACGATTGGGTCGAAAAGTGGAT
CCCCCTGGCTGATGGCTTGGAGGGCGAATTATATGCACAGGCCTGCGTCA
TGATGGTCGAAGCCGTCAAAAGCGGCGAAGGGGATGAGGCTTCTCAAGTA
GAGAAGTGGCTCTTGATTCAGAGAGCGTCAGTCCGACTGATGCATTTCTG
CGCGGAAATTGCGCAACACAGGGGTTGCTTCACAATTTCCAGAGACGATG
TCGAAGCCGCTTGGGACGTTCTGGGTACCTCCGCCAATCGAATGCCTTGC
GCAGGCTTTCTGGCAGTCGATGACTTGGAATCGGAGTCTCAAGAGAGCGG
TGAAGAAAACGAAGCTTATGATTCCTCGGAGGATATCGGTTCAGACGACG
ACAGCGACGACGACGATGATGACTACGACGACGAATTCAACGATGAATGC
AACGATGCATATAGCGATGACTACATGTCCGATGTCCACAACGATGATGA
CAATGACTACGACGATTGGGTC
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