mRNA_H-paniculata_contig1486.2894.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1486.2894.1
Unique NamemRNA_H-paniculata_contig1486.2894.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1486.2894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1486contigH-paniculata_contig1486:8905..9184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size280
Cds size192
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1486.2894.1prot_H-paniculata_contig1486.2894.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1486 8941..9132 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929183.0370626-UTR-H-paniculata_contig1486:8904..89401622929183.0370626-UTR-H-paniculata_contig1486:8904..8940Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1486 8905..8940 +
1691480763.31761-UTR-H-paniculata_contig1486:8904..89401691480763.31761-UTR-H-paniculata_contig1486:8904..8940Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1486 8905..8940 +
1622929183.0710082-UTR-H-paniculata_contig1486:9132..91841622929183.0710082-UTR-H-paniculata_contig1486:9132..9184Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1486 9133..9184 +
1691480763.3422565-UTR-H-paniculata_contig1486:9132..91841691480763.3422565-UTR-H-paniculata_contig1486:9132..9184Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1486 9133..9184 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929183.0543761-CDS-H-paniculata_contig1486:8940..91321622929183.0543761-CDS-H-paniculata_contig1486:8940..9132Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1486 8941..9132 +
1691480763.328716-CDS-H-paniculata_contig1486:8940..91321691480763.328716-CDS-H-paniculata_contig1486:8940..9132Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1486 8941..9132 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1486.2894.1

>prot_H-paniculata_contig1486.2894.1 ID=prot_H-paniculata_contig1486.2894.1|Name=mRNA_H-paniculata_contig1486.2894.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
MRCNTWVRKMGALKVPDDDDFSAPRYIAVVEDDGVMLQESLDISVELSEF
VGMGDAADRDAQV*
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mRNA from alignment at H-paniculata_contig1486:8905..9184+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1486.2894.1 ID=mRNA_H-paniculata_contig1486.2894.1|Name=mRNA_H-paniculata_contig1486.2894.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=280bp|location=Sequence derived from alignment at H-paniculata_contig1486:8905..9184+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCAAACTGTGGGAAACCTGTTTCTCACGCGGTTAATGAGATGCAACAC
GTGGGTCCGTAAAATGGGCGCCCTTAAGGTACCGGATGACGATGACTTCA
GCGCCCCCCGGTACATCGCTGTCGTTGAGGATGATGGGGTCATGCTACAG
GAGTCGCTTGACATCTCCGTGGAACTTTCGGAGTTTGTGGGTATGGGGGA
TGCGGCAGACAGGGATGCACAGGTTTAACACGAAACATTTTACGGTATGT
TATCGGCTATATTAGGGTTGGAGAGGGGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig1486:8905..9184+

>mRNA_H-paniculata_contig1486.2894.1 ID=mRNA_H-paniculata_contig1486.2894.1|Name=mRNA_H-paniculata_contig1486.2894.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig1486:8905..9184+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGATGCAACACGTGGGTCCGTAAAATGGGCGCCCTTAAGGTACCGGA
TGACGATGACTTCAGCGCCCCCCGGTACATCGCTGTCGTTGAGGATGATG
GGGTCATGCTACAGGAGTCGCTTGACATCTCCGTGGAACTTTCGGAGTTT
GTGGGTATGGGGGATGCGGCAGACAGGGATGCACAGGTTTAAATGAGATG
CAACACGTGGGTCCGTAAAATGGGCGCCCTTAAGGTACCGGATGACGATG
ACTTCAGCGCCCCCCGGTACATCGCTGTCGTTGAGGATGATGGGGTCATG
CTACAGGAGTCGCTTGACATCTCCGTGGAACTTTCGGAGTTTGTGGGTAT
GGGGGATGCGGCAGACAGGGATGCACAGGTTTAA
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