mRNA_H-paniculata_contig14858.2892.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14858.2892.1
Unique NamemRNA_H-paniculata_contig14858.2892.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14858.2892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14858contigH-paniculata_contig14858:3578..4131 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size554
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14858.2892.1prot_H-paniculata_contig14858.2892.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14858 3671..4006 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929182.431243-UTR-H-paniculata_contig14858:3577..36701622929182.431243-UTR-H-paniculata_contig14858:3577..3670Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14858 3578..3670 +
1691480763.217029-UTR-H-paniculata_contig14858:3577..36701691480763.217029-UTR-H-paniculata_contig14858:3577..3670Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14858 3578..3670 +
1622929182.465093-UTR-H-paniculata_contig14858:4006..41311622929182.465093-UTR-H-paniculata_contig14858:4006..4131Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14858 4007..4131 +
1691480763.2341025-UTR-H-paniculata_contig14858:4006..41311691480763.2341025-UTR-H-paniculata_contig14858:4006..4131Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14858 4007..4131 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929182.4479053-CDS-H-paniculata_contig14858:3670..40061622929182.4479053-CDS-H-paniculata_contig14858:3670..4006Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14858 3671..4006 +
1691480763.2257497-CDS-H-paniculata_contig14858:3670..40061691480763.2257497-CDS-H-paniculata_contig14858:3670..4006Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14858 3671..4006 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14858.2892.1

>prot_H-paniculata_contig14858.2892.1 ID=prot_H-paniculata_contig14858.2892.1|Name=mRNA_H-paniculata_contig14858.2892.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
MHLCLDRLLFWREVNCLFPSRAGVMRGLFISSTPALARGIVLLDMYRIVA
SSYPGLNTRYVAVSSRPEGGSLCASHPCPISGGCCRENEYELGLTCVLVV
IPHCWWLVALV*
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mRNA from alignment at H-paniculata_contig14858:3578..4131+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14858.2892.1 ID=mRNA_H-paniculata_contig14858.2892.1|Name=mRNA_H-paniculata_contig14858.2892.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=554bp|location=Sequence derived from alignment at H-paniculata_contig14858:3578..4131+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGTCTTTGATTTTGTGGGAAGAGCTAATGTTCCCTTCTTGCTGCTGCG
TGGGGGGGGGGGTTGTGGCGAACGTGTTGTTTCATGTGTTGTCATGCATC
TGTGTCTAGATCGTTTGCTCTTTTGGAGGGAGGTCAATTGCTTGTTTCCT
AGTCGGGCTGGTGTCATGCGTGGTTTATTCATTTCAAGTACTCCAGCTTT
AGCGCGCGGTATTGTGCTGCTGGACATGTACAGAATAGTAGCGAGCAGCT
ATCCCGGCCTGAACACTCGATACGTTGCCGTATCATCGCGGCCCGAGGGT
GGGTCGTTGTGTGCTTCTCACCCATGCCCCATAAGCGGGGGGTGTTGTAG
AGAGAACGAATATGAACTTGGTTTGACTTGCGTGTTGGTTGTAATTCCTC
ACTGCTGGTGGCTGGTGGCTTTGGTCTGACCTCCCGCATTCGTATGTATC
CGCTATTGACCATAGAGCCACGAAAAAATGACTTGACTAAAATCAGGCCG
GTTCCTCAATTGTTTCAGGGTTGTTTTGAATATACTATTTACTTCAATAT
TAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig14858:3578..4131+

>mRNA_H-paniculata_contig14858.2892.1 ID=mRNA_H-paniculata_contig14858.2892.1|Name=mRNA_H-paniculata_contig14858.2892.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig14858:3578..4131+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATCTGTGTCTAGATCGTTTGCTCTTTTGGAGGGAGGTCAATTGCTT
GTTTCCTAGTCGGGCTGGTGTCATGCGTGGTTTATTCATTTCAAGTACTC
CAGCTTTAGCGCGCGGTATTGTGCTGCTGGACATGTACAGAATAGTAGCG
AGCAGCTATCCCGGCCTGAACACTCGATACGTTGCCGTATCATCGCGGCC
CGAGGGTGGGTCGTTGTGTGCTTCTCACCCATGCCCCATAAGCGGGGGGT
GTTGTAGAGAGAACGAATATGAACTTGGTTTGACTTGCGTGTTGGTTGTA
ATTCCTCACTGCTGGTGGCTGGTGGCTTTGGTCTGAATGCATCTGTGTCT
AGATCGTTTGCTCTTTTGGAGGGAGGTCAATTGCTTGTTTCCTAGTCGGG
CTGGTGTCATGCGTGGTTTATTCATTTCAAGTACTCCAGCTTTAGCGCGC
GGTATTGTGCTGCTGGACATGTACAGAATAGTAGCGAGCAGCTATCCCGG
CCTGAACACTCGATACGTTGCCGTATCATCGCGGCCCGAGGGTGGGTCGT
TGTGTGCTTCTCACCCATGCCCCATAAGCGGGGGGTGTTGTAGAGAGAAC
GAATATGAACTTGGTTTGACTTGCGTGTTGGTTGTAATTCCTCACTGCTG
GTGGCTGGTGGCTTTGGTCTGA
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